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Update app.py
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app.py
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@@ -1,77 +1,3 @@
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# ------------------------------------------------------------
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# NEW — Dimensional‑reduction / clustering feature
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# ------------------------------------------------------------
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def dim_reduction(method='t-SNE', perplexity=30, n_neighbors=15, min_dist=0.1,
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use_cnn=False, cluster_eps=0.5, cluster_min_samples=5):
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"""
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Compute 2‑D embedding (t‑SNE or UMAP) of per‑storm features.
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Returns a Plotly Figure and an info string.
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"""
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global typhoon_max, typhoon_data
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if typhoon_max is None:
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return None, "No typhoon data loaded."
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df = typhoon_max.copy()
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# Select features
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if use_cnn and TF_AVAILABLE:
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MAX_LEN = 100
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grouped = typhoon_data.groupby('SID')
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sequences = []
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for sid in df['SID']:
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winds = grouped.get_group(sid)['USA_WIND'].fillna(0).values if sid in grouped.groups else []
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winds = winds[:MAX_LEN]
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seq = np.zeros(MAX_LEN, dtype=np.float32)
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seq[:len(winds)] = winds
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sequences.append(seq)
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X = np.stack(sequences)[..., None]
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model = models.Sequential([
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layers.Conv1D(16, 5, activation='relu', input_shape=(MAX_LEN,1)),
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layers.MaxPool1D(2),
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layers.Conv1D(32, 3, activation='relu'),
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layers.GlobalAveragePooling1D(),
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layers.Dense(32, activation='relu')
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])
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embeddings = model.predict(X, verbose=0)
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features_for_dr = embeddings
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feature_text = "CNN latent vectors"
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else:
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features = ['USA_WIND','USA_PRES','LAT','LON']
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features_for_dr = df[features].fillna(0).values
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feature_text = ", ".join(features)
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from sklearn.preprocessing import StandardScaler
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X_std = StandardScaler().fit_transform(features_for_dr)
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if method == 't-SNE':
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from sklearn.manifold import TSNE
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reducer = TSNE(n_components=2, init='pca', perplexity=perplexity, learning_rate='auto', random_state=0)
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coords = reducer.fit_transform(X_std)
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else:
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reducer = umap.UMAP(n_neighbors=n_neighbors, min_dist=min_dist, n_components=2, random_state=0)
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coords = reducer.fit_transform(X_std)
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df['DR_X'] = coords[:,0]
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df['DR_Y'] = coords[:,1]
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from sklearn.cluster import DBSCAN
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clusterer = DBSCAN(eps=cluster_eps, min_samples=cluster_min_samples)
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labels = clusterer.fit_predict(coords)
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df['Cluster'] = labels.astype(str)
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import plotly.express as px
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fig = px.scatter(
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df, x='DR_X', y='DR_Y',
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color='Category', symbol='Cluster',
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hover_data={'Name': df['NAME'], 'Year': df['Year'], 'Wind': df['USA_WIND'], 'Pressure': df['USA_PRES']},
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title=f"{method} embedding (features: {feature_text})"
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)
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fig.update_traces(marker=dict(size=6, line=dict(width=0.5,color='black')))
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info=f"Method: {method} | Points: {len(df)} | Clusters: {len(set(labels))-('-1' in set(labels))}"
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return fig, info
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import os
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import argparse
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import logging
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@@ -84,13 +10,6 @@ import csv
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import gradio as gr
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import pandas as pd
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import numpy as np
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import umap # NEW
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try:
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import tensorflow as tf
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from tensorflow.keras import layers, models
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TF_AVAILABLE = True
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except Exception:
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TF_AVAILABLE = False
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import matplotlib.pyplot as plt
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import matplotlib.animation as animation
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from matplotlib.backends.backend_agg import FigureCanvasAgg as FigureCanvas
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@@ -1243,27 +1162,6 @@ def create_interface():
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outputs=[regression_plot, slopes_text, lon_regression_results]
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)
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# ---- Dimensional Reduction (t‑SNE / UMAP) ----
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with gr.Tab("Dimensional Reduction (t‑SNE / UMAP)"):
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dr_method = gr.Dropdown(['t-SNE','UMAP'], label="Method", value='t-SNE')
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tsne_perp = gr.Slider(5,100,step=5,value=30,label="t‑SNE Perplexity")
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umap_nn = gr.Slider(5,100,step=1,value=15,label="UMAP n_neighbors")
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umap_md = gr.Slider(0.0,1.0,step=0.05,value=0.1,label="UMAP min_dist")
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use_cnn_box = gr.Checkbox(label="Use CNN latent features", value=False, visible=TF_AVAILABLE)
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cluster_eps = gr.Slider(0.1,5.0,step=0.1,value=0.5,label="DBSCAN ε")
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cluster_min = gr.Slider(2,20,step=1,value=5,label="DBSCAN min_samples")
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dr_btn = gr.Button("Compute Embedding")
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dr_plot = gr.Plot()
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dr_info = gr.Textbox(label="Info")
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def _dr_wrapper(method, perp, nn, md, cnn, eps, mns):
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return dim_reduction(method, perp, nn, md, cnn, eps, mns)
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dr_btn.click(
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fn=_dr_wrapper,
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inputs=[dr_method, tsne_perp, umap_nn, umap_md, use_cnn_box, cluster_eps, cluster_min],
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outputs=[dr_plot, dr_info]
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)
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with gr.Tab("Tropical Cyclone Path Animation"):
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with gr.Row():
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year_dropdown = gr.Dropdown(label="Year", choices=[str(y) for y in range(1950, 2025)], value="2000")
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import os
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import argparse
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import logging
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import gradio as gr
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import pandas as pd
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import numpy as np
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import matplotlib.pyplot as plt
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import matplotlib.animation as animation
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from matplotlib.backends.backend_agg import FigureCanvasAgg as FigureCanvas
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outputs=[regression_plot, slopes_text, lon_regression_results]
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)
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with gr.Tab("Tropical Cyclone Path Animation"):
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with gr.Row():
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year_dropdown = gr.Dropdown(label="Year", choices=[str(y) for y in range(1950, 2025)], value="2000")
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