Spaces:
Sleeping
Sleeping
File size: 27,468 Bytes
49f05be 6f67bd1 49f05be 6f67bd1 49f05be 6f67bd1 49f05be 6f67bd1 49f05be 661adbf 3870520 49f05be 031c8b4 1f8faa0 031c8b4 1f8faa0 42e1822 49f05be 3870520 49f05be c6c542d 49f05be c6c542d 49f05be c6c542d 49f05be bd924be 661adbf 42e1822 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 | # -*- coding: utf-8 -*-
"""
Gradio demo β Hugging Face Space ready.
Input : one color fundus photograph
Output: (1) anti-VEGF intolerance risk score (color-coded clinical card)
(2) Grad-CAM heatmap (explains the PREDICTED class)
(3) three vascular imaging biomarkers (as a table)
LICENSE / COMPLIANCE: this demo uses a DINOv2 (ViT-L/14) backbone fine-tuned in-house;
the released weights are distributed under Apache-2.0 (DINOv2's permissive license).
This demo is a research prototype and NOT a medical device β not for clinical use.
NO patient data is bundled with this Space.
Weights resolution order:
1. env var WEIGHTS_PATH (local path), if it exists;
2. a local weights/dino_deploy.pth, if it exists;
3. auto-download from WEIGHTS_URL (e.g. the Hugging Face model repo), if set;
4. fall back to a randomly-initialized head (demo runs but predictions are
meaningless) and the UI clearly says so.
"""
import os
import shutil
import tempfile
import urllib.request
import numpy as np
import cv2
import torch
import gradio as gr
from PIL import Image
from src.model import FundusClassifier
from src.dataset import build_transforms
from src.biomarkers import compute_biomarkers
from src.gradcam import reshape_transform
from pytorch_grad_cam import GradCAM
from pytorch_grad_cam.utils.image import show_cam_on_image
from pytorch_grad_cam.utils.model_targets import ClassifierOutputTarget
DEVICE = "cuda" if torch.cuda.is_available() else "cpu"
THRESH = float(os.environ.get("THRESHOLD", "0.5"))
WEIGHTS_URL = os.environ.get("WEIGHTS_URL", "") # set to the Zenodo DINOv2 weights URL once uploaded
WEIGHTS_PATH = os.environ.get("WEIGHTS_PATH", "weights/dino_deploy.pth")
# colormap for the heatmap: TURBO (20) is perceptually clearer than JET
_CMAP = getattr(cv2, "COLORMAP_TURBO", cv2.COLORMAP_JET)
def _resolve_weights() -> str | None:
"""Return a local path to the fine-tuned weights.
Resolution order β hardened against the free-Space cold-start "stuck on
Starting" symptom:
(1) a local WEIGHTS_PATH if it already exists;
(2) a cached, resumable ``hf_hub_download`` from a HF model repo
(preferred: a re-boot re-uses the cache instead of re-fetching
1.2 GB, and a stalled connection can never hang forever);
(3) a direct WEIGHTS_URL download with a hard socket timeout as fallback.
Set ``WEIGHTS_REPO`` (e.g. ``fc28/CM-Oculomics-weights``) to force path (2);
otherwise it is derived automatically from a huggingface.co WEIGHTS_URL.
"""
if os.path.exists(WEIGHTS_PATH):
return WEIGHTS_PATH
# (2) preferred: cached + resumable download from a HF model repo
repo = os.environ.get("WEIGHTS_REPO", "")
fname = os.environ.get("WEIGHTS_FILE", "dino_deploy.pth")
if not repo and "huggingface.co/" in WEIGHTS_URL and "/resolve/" in WEIGHTS_URL:
try: # derive "<repo>" and "<file>" from .../<repo>/resolve/<rev>/<file>
after = WEIGHTS_URL.split("huggingface.co/", 1)[1]
repo = after.split("/resolve/", 1)[0]
fname = after.split("/resolve/", 1)[1].split("/", 1)[1]
except Exception: # noqa: BLE001 - malformed URL: skip to (3)
repo = ""
if repo:
try:
from huggingface_hub import hf_hub_download
print(f"[weights] hf_hub_download {repo}/{fname} ...")
p = hf_hub_download(repo_id=repo, filename=fname,
token=os.environ.get("HF_TOKEN") or None)
if os.path.getsize(p) > 1_000_000:
print("[weights] hf_hub_download OK")
return p
except Exception as e: # noqa: BLE001 - fall through to URL / placeholder
print(f"[weights] hf_hub_download failed: {e}")
# (3) fallback: direct URL, but with a hard timeout so startup can never hang
if WEIGHTS_URL:
try:
os.makedirs(os.path.dirname(WEIGHTS_PATH) or ".", exist_ok=True)
print(f"[weights] downloading from {WEIGHTS_URL} (timeout=60s) ...")
with urllib.request.urlopen(WEIGHTS_URL, timeout=60) as r, \
open(WEIGHTS_PATH, "wb") as f:
shutil.copyfileobj(r, f)
if os.path.exists(WEIGHTS_PATH) and os.path.getsize(WEIGHTS_PATH) > 1_000_000:
print("[weights] download OK")
return WEIGHTS_PATH
print("[weights] downloaded file looks too small; ignoring")
except Exception as e: # noqa: BLE001 - demo must not crash on network errors
print(f"[weights] download failed: {e}")
return None
# ---- build DINOv2 (ViT-L/14) β primary backbone, matches the paper ----
import timm
import torch.nn as nn
_GRID = 224 // 14 # 16x16 patch-token grid
def _build_model():
backbone = timm.create_model("vit_large_patch14_dinov2", pretrained=False,
num_classes=0, img_size=224, drop_rate=0.2)
head = nn.Sequential(nn.LayerNorm(backbone.num_features), nn.Dropout(0.2),
nn.Linear(backbone.num_features, 2))
return nn.Sequential(backbone, head)
def _dino_reshape(t, s=_GRID):
x = t[:, -s * s:, :] # keep patch tokens (drop cls/register tokens)
return x.reshape(t.size(0), s, s, t.size(2)).permute(0, 3, 1, 2)
# ---- load model once ----
_model = _build_model()
_wpath = _resolve_weights()
if _wpath:
_model.load_state_dict(torch.load(_wpath, map_location="cpu"))
_WEIGHTS_OK = True
else:
_WEIGHTS_OK = False
_model = _model.to(DEVICE).eval()
_tf = build_transforms(224, train=False)
_cam = GradCAM(model=_model, target_layers=[_model[0].blocks[-1].norm1],
reshape_transform=_dino_reshape)
_DEVICE_NOTE = ("GPU" if DEVICE == "cuda"
else "CPU β first inference may take a few seconds")
_BM_META = {
"vascular_density": ("Vascular density", "fraction of FOV"),
"vascular_skeleton_length": ("Vascular-skeleton length", "normalized"),
"vascular_fractal_dimension": ("Vascular fractal dimension", "box-counting"),
}
# Group means from the study (tolerant=NPDR vs intolerant=PDR). All three
# biomarkers are HIGHER in intolerant eyes (neovascularization burden); we use
# the midpoint of the two group means as an interpretive reference. This is a
# population-level interpretation, NOT a diagnosis.
_BM_REF = {
# key: (tolerant_mean, intolerant_mean)
"vascular_density": (0.497, 0.633),
"vascular_skeleton_length": (0.275, 0.379),
"vascular_fractal_dimension": (1.734, 1.801),
}
def _bm_interpret(key, val):
"""Return (level_label, css_class, text) for a biomarker value."""
if key not in _BM_REF:
return ("", "mid", "")
lo, hi = _BM_REF[key]
mid = (lo + hi) / 2.0
if val >= hi:
return ("High", "hi",
"above the intolerant-group average β pattern associated with "
"higher neovascularization burden")
if val >= mid:
return ("Elevated", "hi",
"above the midpoint between groups β leans toward the "
"intolerant pattern")
if val >= lo:
return ("Borderline", "mid",
"between group averages β intermediate")
return ("Low", "lo",
"below the tolerant-group average β pattern associated with lower "
"neovascularization burden")
def analyze(image):
if image is None:
return (
"<div class='risk-card neutral'><b>Please upload a fundus image to begin.</b></div>",
None,
"<div class='bm-empty'>Biomarkers will appear here after analysis.</div>",
)
pil = image.convert("RGB")
# --- risk score ---
x = _tf(pil).unsqueeze(0).to(DEVICE)
with torch.no_grad():
probs = torch.softmax(_model(x), 1)[0]
prob = probs[1].item() # P(intolerant)
pred_class = int(probs.argmax().item()) # the class the model predicts
high = prob >= THRESH
pct = prob * 100.0
label = "INTOLERANT β high risk" if high else "TOLERANT β low risk"
css_cls = "high" if high else "low"
warn = "" if _WEIGHTS_OK else (
"<div class='warn'>β No fine-tuned weights available β this output is a "
"PLACEHOLDER (random head). Set WEIGHTS_PATH / WEIGHTS_URL for real "
"predictions.</div>"
)
interp = ("Higher probability suggests the eye may be less responsive to "
"anti-VEGF therapy; such cases may warrant closer follow-up or "
"earlier consideration of escalation. "
if high else
"Lower probability suggests the eye is more likely to respond to "
"anti-VEGF therapy. ")
risk_html = f"""
<div class='risk-card {css_cls}'>
<div class='risk-row'>
<span class='risk-dot'></span>
<span class='risk-label'>{label}</span>
</div>
<div class='risk-value'>{prob:.3f}</div>
<div class='risk-sub'>probability of anti-VEGF intolerance</div>
<div class='bar'><div class='bar-fill' style='width:{pct:.1f}%'></div>
<div class='bar-thresh' style='left:{THRESH*100:.0f}%'></div></div>
<div class='risk-meta'>decision threshold {THRESH:.2f} Β· running on {_DEVICE_NOTE}</div>
<div class='risk-interp'>{interp}</div>
{warn}
</div>
"""
# --- Grad-CAM: explain the PREDICTED class (fixes the "flat" heatmap) ---
rgb = np.array(pil.resize((224, 224))).astype(np.float32) / 255.0
grayscale = _cam(input_tensor=_tf(pil).unsqueeze(0).to(DEVICE),
targets=[ClassifierOutputTarget(pred_class)])[0]
# robust per-image normalization for crisp contrast
g = grayscale - grayscale.min()
g = g / (g.max() + 1e-8)
cam_img = Image.fromarray(
show_cam_on_image(rgb, g, use_rgb=True, colormap=_CMAP, image_weight=0.5)
)
# --- biomarkers -> HTML cards (fully styled, dark-theme safe) ---
with tempfile.NamedTemporaryFile(suffix=".png", delete=False) as tmp:
pil.save(tmp.name)
bm = compute_biomarkers(tmp.name)
items = ""
for key, val in bm.items():
name, unit = _BM_META.get(key, (key.replace("_", " "), ""))
level, lvl_cls, text = _bm_interpret(key, float(val))
badge = (f"<span class='bm-badge {lvl_cls}'>{level}</span>"
if level else "")
note = f"<div class='bm-note'>{text}</div>" if text else ""
items += (
f"<div class='bm-item'>"
f"<div class='bm-top'>"
f"<div class='bm-name'>{name}</div>"
f"<div class='bm-val'>{val}</div>"
f"<div class='bm-unit'>{unit}</div></div>"
f"<div class='bm-bottom'>{badge}{note}</div>"
f"</div>"
)
bm_html = (f"<div class='bm-grid'>{items}</div>"
"<div class='bm-foot'>Interpretation is relative to study "
"group averages (tolerant vs intolerant); higher vascular "
"density, skeleton length, and fractal dimension reflect greater "
"neovascularization burden. Population-level context, not a "
"diagnosis.</div>")
return risk_html, cam_img, bm_html
# ---------------------------------------------------------------------------
# UI β clinical / medical styling
# ---------------------------------------------------------------------------
CSS = """
:root {
--bg:#f4f8fa; --panel:#ffffff; --ink:#10242b; --muted:#5a6b73;
--line:#dbe7ea; --teal:#0b6e6e; --teal-d:#08504f; --cyan:#10b3c4;
--blue:#1f6feb; --green:#15936a; --green-d:#0c6647;
--red:#c23a36; --red-d:#8f2622;
--mono:'JetBrains Mono','SFMono-Regular',ui-monospace,monospace;
}
/* ===== light base with subtle tech grid ===== */
.gradio-container {max-width:1160px !important; margin:auto; color:var(--ink) !important;
background:
radial-gradient(900px 360px at 50% -120px, rgba(16,179,196,.10), transparent 70%),
linear-gradient(rgba(11,110,110,.04) 1px, transparent 1px) 0 0/28px 28px,
linear-gradient(90deg, rgba(11,110,110,.04) 1px, transparent 1px) 0 0/28px 28px,
var(--bg) !important;}
.gradio-container .gr-check-radio label, .gradio-container label span {
cursor:pointer !important;}
.gradio-container input[type=radio], .gradio-container input[type=checkbox] {
width:18px !important; height:18px !important; cursor:pointer !important;
accent-color:var(--teal) !important; appearance:auto !important;
-webkit-appearance:auto !important; opacity:1 !important;}
/* ===== header: dark tech bar (kept for a touch of sci-fi) ===== */
#hdr {text-align:center; padding:24px 18px 18px; border-radius:18px;
background:linear-gradient(135deg,#06363b 0%,#0b4f55 55%,#0a2c45 100%);
border:1px solid rgba(16,179,196,.30);
box-shadow:0 10px 30px rgba(6,40,42,.20), inset 0 0 60px rgba(16,179,196,.08);
position:relative; overflow:hidden;}
#hdr:before {content:''; position:absolute; top:0; left:0; right:0; height:2px;
background:linear-gradient(90deg,transparent,#3fe0ec,transparent);
animation:scan 5s linear infinite;}
@keyframes scan {0%{transform:translateX(-100%)}100%{transform:translateX(100%)}}
#hdr h1 {font-size:1.6rem; margin:0; font-weight:800; letter-spacing:.3px;
background:linear-gradient(90deg,#d7fbf8,#3fe0ec 55%,#9fd2ff);
-webkit-background-clip:text; background-clip:text;
-webkit-text-fill-color:transparent; position:relative;}
#hdr .tag {display:inline-block; margin-top:11px; padding:4px 15px;
border:1px solid rgba(63,224,236,.5); border-radius:999px; color:#bff4f1;
background:rgba(63,224,236,.10); font-size:.76rem; font-weight:700;
letter-spacing:.9px; text-transform:uppercase; position:relative;}
#sub {text-align:center; color:var(--muted); font-size:.92rem; margin:14px auto 4px;
max-width:800px; line-height:1.6;}
.section-title {font-size:.74rem; font-weight:800; color:var(--teal);
text-transform:uppercase; letter-spacing:1.2px; margin:2px 0 8px;
display:flex; align-items:center; gap:8px;}
.section-title:before {content:''; width:8px; height:8px; border-radius:2px;
background:var(--cyan); box-shadow:0 0 8px var(--cyan);}
/* ===== risk card (kept colorful: clinical semantics) ===== */
.risk-card {border-radius:16px; padding:18px 20px; position:relative;
overflow:hidden; color:#fff;}
.risk-card * {color:#fff !important;}
.risk-card.high {background:linear-gradient(135deg,#c23a36,#7a1f1c);
box-shadow:0 8px 24px rgba(194,58,54,.30);}
.risk-card.low {background:linear-gradient(135deg,#15936a,#0a5238);
box-shadow:0 8px 24px rgba(21,147,106,.28);}
.risk-card.neutral {background:linear-gradient(135deg,#5c6f76,#3f4f55);}
.risk-row {display:flex; align-items:center; gap:8px;}
.risk-dot {width:10px; height:10px; border-radius:50%; background:#fff;
box-shadow:0 0 0 4px rgba(255,255,255,.22), 0 0 12px rgba(255,255,255,.8);}
.risk-label {font-size:1.02rem; font-weight:800; letter-spacing:.4px;}
.risk-value {font-family:var(--mono); font-size:3rem; font-weight:800;
line-height:1.05; margin:6px 0 0; text-shadow:0 0 22px rgba(255,255,255,.35);}
.risk-sub {opacity:.92; font-size:.84rem;}
.bar {position:relative; height:10px; background:rgba(255,255,255,.28);
border-radius:8px; margin:14px 0 6px;}
.bar-fill {position:absolute; height:100%; border-radius:8px; background:#fff;
box-shadow:0 0 12px rgba(255,255,255,.7);}
.bar-thresh {position:absolute; top:-4px; width:2px; height:18px; background:#ffe08a;}
.risk-meta {font-family:var(--mono); font-size:.74rem; opacity:.9; margin-top:6px;}
.risk-interp {font-size:.82rem; opacity:.96; margin-top:10px;
border-top:1px solid rgba(255,255,255,.26); padding-top:8px;}
.warn {background:#fff3cd !important; padding:8px 10px;
border:1px solid rgba(122,91,0,.3); border-radius:8px; margin-top:10px;
font-size:.82rem;}
.warn * {color:#7a5b00 !important;}
#foot {text-align:center; color:var(--muted); font-size:.78rem; margin-top:18px;
line-height:1.6;}
#foot a {color:var(--teal); text-decoration:none; font-weight:600;}
/* Grad-CAM image framed like a viewport */
.cam-frame {border-radius:14px !important; padding:6px !important;
background:linear-gradient(135deg,#06363b,#0a2c3a) !important;
border:1px solid rgba(16,179,196,.4) !important;
box-shadow:0 6px 18px rgba(6,40,42,.22), inset 0 0 30px rgba(16,179,196,.08) !important;}
.cam-frame img {border-radius:9px !important;
box-shadow:0 0 0 1px rgba(63,224,236,.35) !important;}
.cam-frame, .cam-frame * {border-color:rgba(16,179,196,.4) !important;}
.cam-note {color:var(--muted); font-size:.78rem; margin-top:6px; text-align:center;}
/* ===== model card ===== */
.mcard {background:var(--panel); border:1px solid var(--line); border-radius:14px;
padding:14px 16px; box-shadow:0 2px 10px rgba(8,80,79,.06);}
.mcard, .mcard * {color:var(--ink) !important;}
.mcard .row {display:flex; justify-content:space-between; padding:6px 0;
border-bottom:1px dashed var(--line); font-size:.85rem;}
.mcard .row:last-child {border-bottom:none;}
.mcard .k {color:var(--muted) !important;}
.mcard .v {color:var(--teal) !important; font-weight:700; font-family:var(--mono);}
.mcard-note {margin-top:10px; font-size:.78rem; color:var(--muted) !important;
line-height:1.5;}
.mcard-note a {color:var(--teal) !important; text-decoration:none;}
/* ===== biomarker cards (dark tech readout, echoes the risk card) ===== */
.bm-grid {display:flex; flex-direction:column; gap:8px;}
.bm-item {padding:12px 15px; border-radius:13px; position:relative; overflow:hidden;
background:linear-gradient(135deg,#06363b,#0a2c3a);
border:1px solid rgba(16,179,196,.32);
box-shadow:0 6px 18px rgba(6,40,42,.22), inset 0 0 34px rgba(16,179,196,.07);}
.bm-item:after {content:''; position:absolute; inset:0; pointer-events:none;
background:linear-gradient(transparent 50%, rgba(255,255,255,.025) 50%);
background-size:100% 4px;}
.bm-item, .bm-item * {color:#dcf6f4 !important;}
.bm-top {display:flex; align-items:baseline; gap:10px; position:relative;}
.bm-name {flex:1; color:#bfe9e6 !important; font-size:.84rem; font-weight:600;}
.bm-val {font-family:var(--mono); font-size:1.45rem; font-weight:800;
color:#3fe0ec !important; text-shadow:0 0 16px rgba(63,224,236,.55);
min-width:80px; text-align:right; letter-spacing:.5px;}
.bm-unit {color:#8fb6b3 !important; font-size:.7rem; min-width:96px;
text-align:right;}
.bm-bottom {display:flex; align-items:center; gap:8px; margin-top:8px;
position:relative;}
.bm-badge {font-size:.66rem; font-weight:800; letter-spacing:.5px;
text-transform:uppercase; padding:2px 8px; border-radius:999px;
border:1px solid; white-space:nowrap;}
.bm-badge.hi {color:#ffb3b1 !important; border-color:rgba(255,120,116,.55);
background:rgba(255,90,87,.16);}
.bm-badge.mid {color:#ffe08a !important; border-color:rgba(255,224,138,.5);
background:rgba(255,224,138,.14);}
.bm-badge.lo {color:#8ff0c6 !important; border-color:rgba(25,201,138,.5);
background:rgba(25,201,138,.16);}
.bm-note {color:#a9d4d1 !important; font-size:.74rem; line-height:1.4;}
.bm-foot {color:var(--muted); font-size:.73rem; line-height:1.5; margin-top:10px;
padding-top:8px; border-top:1px solid var(--line);}
.bm-empty {color:var(--muted); font-size:.82rem; padding:14px;
border:1px dashed var(--line); border-radius:12px; text-align:center;}
/* ===== steps ===== */
.steps {display:flex; gap:12px; margin:4px 0 2px;}
.step {flex:1; background:var(--panel); border:1px solid var(--line);
border-radius:14px; padding:13px 15px; transition:.2s;
box-shadow:0 2px 10px rgba(8,80,79,.06);}
.step:hover {border-color:var(--cyan); transform:translateY(-2px);
box-shadow:0 6px 18px rgba(16,179,196,.18);}
.step .num {display:inline-flex; width:28px; height:28px; border-radius:8px;
background:linear-gradient(135deg,var(--teal),var(--cyan)); color:#fff;
align-items:center; justify-content:center; font-weight:800; font-size:.85rem;
font-family:var(--mono); box-shadow:0 0 14px rgba(16,179,196,.4);}
.step .t {font-weight:800; color:var(--ink) !important; margin:8px 0 2px;
font-size:.92rem;}
.step .d {color:var(--muted) !important; font-size:.8rem; line-height:1.45;}
/* ===== buttons ===== */
.gradio-container button.primary, .gradio-container .primary {
background:linear-gradient(135deg,var(--teal),var(--cyan)) !important;
color:#fff !important; border:none !important; font-weight:800 !important;
box-shadow:0 4px 16px rgba(16,179,196,.32) !important;}
/* hide Gradio's auto-localized footer (Use via API / Settings / Built with Gradio)
so the page stays consistently English regardless of the viewer's browser locale */
footer {display:none !important;}
/* Force the upload box prompt to English (Gradio otherwise localizes the
"Drop Image Here / Click to Upload" text to the viewer's browser language).
Scoped to our image input only; no-op if Gradio's markup differs. */
#fundus_in .wrap {font-size:0 !important;}
#fundus_in .wrap::after {
content:"Drop a fundus image here β or click to upload";
font-size:.95rem !important; color:var(--muted); display:block; margin-top:6px;
font-weight:600; line-height:1.4;}
"""
THEME = gr.themes.Soft(
primary_hue=gr.themes.colors.teal,
secondary_hue=gr.themes.colors.cyan,
neutral_hue=gr.themes.colors.slate,
font=[gr.themes.GoogleFont("Inter"), "system-ui", "sans-serif"],
font_mono=[gr.themes.GoogleFont("JetBrains Mono"), "monospace"],
)
_example_path = "assets/example_fundus.jpg"
_has_example = os.path.exists(_example_path)
# Force the UI to English for all visitors (Gradio auto-localizes built-in strings β
# e.g. the image drop-zone "Drop Image Here / Click to Upload" β to the viewer's
# browser language; we pin navigator.language to English before the frontend reads it).
HEAD = (
"<script>"
"try{"
"Object.defineProperty(navigator,'language',{get:function(){return 'en-US';},configurable:true});"
"Object.defineProperty(navigator,'languages',{get:function(){return ['en-US','en'];},configurable:true});"
"}catch(e){}"
# Force external links (e.g. the GitHub code link) to open in a new top-level
# tab. Inside HF's iframe an in-frame nav to github.com is blocked by GitHub's
# X-Frame-Options ("refused to connect"); window.open escapes the iframe.
"document.addEventListener('click',function(e){"
"var a=e.target&&e.target.closest?e.target.closest(\"a[href^='http']\"):null;"
"if(a&&!/(^https?:\\/\\/)?([^\\/]*\\.)?hf\\.space/.test(a.href)){"
"e.preventDefault();window.open(a.href,'_blank','noopener');}"
"},true);"
"</script>"
)
with gr.Blocks(title="CM-Oculomics β Anti-VEGF Intolerance Prediction") as demo:
gr.HTML(
"<div id='hdr'><h1>CM-Oculomics</h1>"
"<div style='font-size:1.05rem;font-weight:500;color:rgba(255,255,255,0.58);margin:2px 0 5px'>"
"Anti-VEGF Intolerance Prediction from Color Fundus Photographs</div>"
"<span class='tag'>Interpretable AI Β· Diabetic Retinopathy Β· Integrative Medicine</span></div>"
)
gr.HTML(
"<div id='sub'>Predict anti-VEGF intolerance, visualize the supporting "
"evidence with Grad-CAM, and quantify retinal vascular biomarkers β "
"from a single low-cost fundus image.</div>"
)
# --- How it works ---
gr.HTML("<div class='section-title' style='margin-top:6px'>How it works</div>")
gr.HTML(
"<div class='steps'>"
"<div class='step'><span class='num'>1</span>"
"<div class='t'>Upload</div><div class='d'>Provide one color fundus "
"photograph (either eye).</div></div>"
"<div class='step'><span class='num'>2</span>"
"<div class='t'>Encode & classify</div><div class='d'>A fine-tuned "
"DINOv2 vision foundation model estimates intolerance risk.</div></div>"
"<div class='step'><span class='num'>3</span>"
"<div class='t'>Explain</div><div class='d'>Grad-CAM and vascular "
"biomarkers show the evidence behind the score.</div></div>"
"</div>"
)
with gr.Row(equal_height=False):
with gr.Column(scale=5):
with gr.Group():
gr.HTML("<div class='section-title'>Input</div>")
inp = gr.Image(type="pil", label="Color fundus photograph",
height=340, elem_id="fundus_in")
with gr.Row():
btn = gr.Button("Analyze", variant="primary", scale=3)
clr = gr.ClearButton(value="Reset", scale=1)
if _has_example:
gr.Examples(examples=[[_example_path]], inputs=inp,
label="Example (public DDR sample)")
# --- Model card (descriptive only; no performance numbers) ---
gr.HTML("<div class='section-title' style='margin-top:14px'>About the model</div>")
gr.HTML(
"<div class='mcard'>"
"<div class='row'><span class='k'>Backbone</span>"
"<span class='v'>DINOv2 ViT-L/14 (vision foundation model)</span></div>"
"<div class='row'><span class='k'>Task</span>"
"<span class='v'>anti-VEGF intolerance (binary)</span></div>"
"<div class='row'><span class='k'>Training data</span>"
"<span class='v'>de-identified DR fundus images</span></div>"
"<div class='row'><span class='k'>Explainability</span>"
"<span class='v'>Grad-CAM + vascular biomarkers</span></div>"
"<div class='mcard-note'>Full methodology and evaluation are "
"reported in the accompanying paper and "
"<a href='https://github.com/23008613g/CM-Oculomics' "
"target='_blank' rel='noopener noreferrer'>code "
"repository</a>.</div>"
"</div>"
)
with gr.Column(scale=6):
gr.HTML("<div class='section-title'>Risk assessment</div>")
risk_out = gr.HTML()
with gr.Row():
with gr.Column(scale=1):
gr.HTML("<div class='section-title'>Model attention (Grad-CAM)</div>")
cam_out = gr.Image(label=None, height=240, show_label=False,
elem_classes="cam-frame")
gr.HTML("<div class='cam-note'>Warm colors = regions driving "
"the prediction</div>")
with gr.Column(scale=1):
gr.HTML("<div class='section-title'>Vascular biomarkers</div>")
bm_out = gr.HTML(
"<div class='bm-empty'>Biomarkers will appear here "
"after analysis.</div>"
)
gr.HTML(
"<div id='foot'><b>For research use only.</b><br>"
"Model: DINOv2 ViT-L/14, fine-tuned in-house Β· weights under Apache-2.0. "
"No patient data are bundled.<br>"
"<a href='https://github.com/23008613g/CM-Oculomics' "
"target='_blank' rel='noopener noreferrer'>Code</a></div>"
)
btn.click(analyze, inputs=inp, outputs=[risk_out, cam_out, bm_out])
clr.add([inp, risk_out, cam_out, bm_out])
if __name__ == "__main__":
demo.launch(server_name=os.environ.get("GRADIO_SERVER_NAME", "0.0.0.0"),
server_port=int(os.environ.get("GRADIO_SERVER_PORT", "7860")),
theme=THEME, css=CSS, head=HEAD)
|