Spaces:
Sleeping
Sleeping
File size: 12,950 Bytes
af3091e | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 | """Tabular classification bundles: Titanic, Heart Disease, Wine Quality.
Each bundle is trained lazily on first access from CSVs in ``sample_data/``.
Per-request contributions use:
- Titanic (LogisticRegression): signed ``coef * (x_scaled)`` per feature
- Heart / Wine (GradientBoostingClassifier): LOCO-style approximation β
substitute each feature with the training mean/mode and compute Ξprob.
All three bundles expose a uniform ``predict(payload)`` callable returning the
unified response schema consumed by the ``/tabular/*`` endpoints.
"""
from __future__ import annotations
import os
import threading
from dataclasses import dataclass
from typing import Any, Callable
import numpy as np
import pandas as pd
from sklearn.compose import ColumnTransformer
from sklearn.ensemble import GradientBoostingClassifier
from sklearn.linear_model import LogisticRegression
from sklearn.pipeline import Pipeline
from sklearn.preprocessing import OneHotEncoder, StandardScaler
_DATA_DIR = os.path.join(os.path.dirname(os.path.abspath(__file__)), "sample_data")
_lock = threading.Lock()
_bundles: dict[str, "TabularBundle"] = {}
@dataclass
class TabularBundle:
name: str
pipeline: Pipeline
feature_order: list[str]
categorical: list[str]
numeric: list[str]
class_labels: list[str]
model_label: str
target_type: str # "binary" or "multiclass"
baseline: dict[str, Any] # training means / modes for LOCO substitution
positive_class: str | None = None # for binary display
def predict(self, payload: dict[str, Any]) -> dict[str, Any]:
"""Run prediction + contributions on a single row payload."""
row = {f: payload.get(f, self.baseline[f]) for f in self.feature_order}
x_df = pd.DataFrame([row], columns=self.feature_order)
proba = self.pipeline.predict_proba(x_df)[0]
classes = [str(c) for c in self.pipeline.classes_]
probabilities = {
label_for_class(self.class_labels, classes, c): float(p)
for c, p in zip(classes, proba)
}
top_idx = int(np.argmax(proba))
top_class_raw = classes[top_idx]
top_class_label = label_for_class(self.class_labels, classes, top_class_raw)
# Contributions
if isinstance(self.pipeline.named_steps["clf"], LogisticRegression):
contributions = _logreg_contributions(
self.pipeline, x_df, self.feature_order, self.numeric, self.categorical
)
else:
contributions = _loco_contributions(
self.pipeline,
x_df,
self.feature_order,
self.baseline,
top_idx,
)
# Top-1 probability for gauge
confidence = float(proba[top_idx])
# Build feature_importance (signed) sorted by |contribution|
fi_list = [
{
"feature": feat,
"value": _display_value(row[feat]),
"contribution": float(contrib),
}
for feat, contrib in contributions.items()
]
fi_list.sort(key=lambda d: abs(d["contribution"]), reverse=True)
return {
"prediction": top_class_label,
"confidence": confidence,
"probabilities": probabilities,
"feature_importance": fi_list,
"feature_order": self.feature_order,
"model": self.model_label,
"target_type": self.target_type,
}
def label_for_class(class_labels: list[str], classes: list[str], raw: str) -> str:
"""Map model class output (may be '0','1' or string) to display label."""
try:
idx = classes.index(raw)
if idx < len(class_labels):
return class_labels[idx]
except ValueError:
pass
return raw
def _display_value(v: Any) -> Any:
if isinstance(v, float):
if v != v: # NaN
return None
return round(float(v), 3)
return v
# βββ Contribution helpers βββ
def _logreg_contributions(
pipeline: Pipeline,
x_df: pd.DataFrame,
feature_order: list[str],
numeric: list[str],
categorical: list[str],
) -> dict[str, float]:
"""Compute signed coef * x_scaled contribution per original feature.
For one-hot encoded categoricals we sum over all dummy columns tied to the
original feature so the contribution aggregates cleanly for the UI.
"""
preprocessor: ColumnTransformer = pipeline.named_steps["prep"]
clf: LogisticRegression = pipeline.named_steps["clf"]
x_trans = preprocessor.transform(x_df)
if hasattr(x_trans, "toarray"):
x_trans = x_trans.toarray()
x_trans = np.asarray(x_trans).ravel()
coef = clf.coef_
# Binary LR β single row of coefs; multiclass β use class 1 row (positive)
if coef.shape[0] == 1:
coefs = coef[0]
else:
coefs = coef[-1]
# Map transformed column index β original feature name
feature_names_out = _get_feature_names_out(preprocessor, numeric, categorical)
per_feat: dict[str, float] = {f: 0.0 for f in feature_order}
for i, col_name in enumerate(feature_names_out):
original = _strip_prefix(col_name, numeric + categorical)
if original in per_feat:
per_feat[original] += float(coefs[i] * x_trans[i])
return per_feat
def _get_feature_names_out(
preprocessor: ColumnTransformer,
numeric: list[str],
categorical: list[str],
) -> list[str]:
"""Best-effort retrieval of column names from fitted ColumnTransformer."""
try:
return list(preprocessor.get_feature_names_out())
except Exception:
pass
names: list[str] = []
for name, transformer, cols in preprocessor.transformers_:
if name == "num":
names.extend([f"num__{c}" for c in cols])
elif name == "cat":
try:
ohe_names = transformer.get_feature_names_out(cols)
except Exception:
ohe_names = [f"cat__{c}" for c in cols]
names.extend(ohe_names)
return names
def _strip_prefix(col_name: str, originals: list[str]) -> str:
# sklearn formats: "num__age", "cat__sex_female"
for o in originals:
if col_name == f"num__{o}" or col_name.startswith(f"cat__{o}_"):
return o
if col_name == o or col_name.startswith(f"{o}_"):
return o
return col_name.split("__", 1)[-1].split("_", 1)[0]
def _loco_contributions(
pipeline: Pipeline,
x_df: pd.DataFrame,
feature_order: list[str],
baseline: dict[str, Any],
target_idx: int,
) -> dict[str, float]:
"""LOCO approximation β substitute each feature with its baseline value and
compute delta in predicted probability for the predicted class."""
base_proba = pipeline.predict_proba(x_df)[0][target_idx]
contributions: dict[str, float] = {}
for feat in feature_order:
substituted = x_df.copy()
substituted[feat] = baseline[feat]
new_proba = pipeline.predict_proba(substituted)[0][target_idx]
# contribution = base - new_with_feature_neutralised
# β positive means feature pushed probability UP
contributions[feat] = float(base_proba - new_proba)
return contributions
# βββ Bundle builders βββ
def _build_titanic() -> TabularBundle:
path = os.path.join(_DATA_DIR, "titanic.csv")
df = pd.read_csv(path)
# Clean
df = df[["pclass", "sex", "age", "sibsp", "parch", "fare", "embarked", "survived"]].copy()
df["age"] = df["age"].fillna(df["age"].median())
df["fare"] = df["fare"].fillna(df["fare"].median())
df["embarked"] = df["embarked"].fillna(df["embarked"].mode().iloc[0])
df = df.dropna(subset=["survived"])
numeric = ["age", "sibsp", "parch", "fare"]
categorical = ["pclass", "sex", "embarked"]
feature_order = ["pclass", "sex", "age", "sibsp", "parch", "fare", "embarked"]
preprocessor = ColumnTransformer(
transformers=[
("num", StandardScaler(), numeric),
("cat", OneHotEncoder(handle_unknown="ignore"), categorical),
]
)
pipeline = Pipeline([
("prep", preprocessor),
("clf", LogisticRegression(max_iter=500, C=1.0)),
])
pipeline.fit(df[feature_order], df["survived"].astype(int))
baseline: dict[str, Any] = {
"pclass": int(df["pclass"].mode().iloc[0]),
"sex": df["sex"].mode().iloc[0],
"age": float(df["age"].median()),
"sibsp": int(df["sibsp"].median()),
"parch": int(df["parch"].median()),
"fare": float(df["fare"].median()),
"embarked": df["embarked"].mode().iloc[0],
}
return TabularBundle(
name="titanic-survival",
pipeline=pipeline,
feature_order=feature_order,
categorical=categorical,
numeric=numeric,
class_labels=["Did not survive", "Survived"],
model_label="LogisticRegression (Titanic)",
target_type="binary",
baseline=baseline,
positive_class="Survived",
)
def _build_heart() -> TabularBundle:
path = os.path.join(_DATA_DIR, "heart.csv")
df = pd.read_csv(path)
# UCI Cleveland: num 0 = no disease, 1-4 = presence β bin to binary
df = df[[
"age", "sex", "cp", "trestbps", "chol", "fbs",
"restecg", "thalach", "exang", "oldpeak", "num",
]].copy()
df = df.apply(pd.to_numeric, errors="coerce").dropna()
df["target"] = (df["num"] > 0).astype(int)
df = df.drop(columns=["num"])
feature_order = [
"age", "sex", "cp", "trestbps", "chol", "fbs",
"restecg", "thalach", "exang", "oldpeak",
]
numeric = feature_order[:]
categorical: list[str] = []
preprocessor = ColumnTransformer(
transformers=[("num", StandardScaler(), numeric)]
)
pipeline = Pipeline([
("prep", preprocessor),
("clf", GradientBoostingClassifier(n_estimators=150, max_depth=3, random_state=0)),
])
pipeline.fit(df[feature_order], df["target"])
baseline = {f: float(df[f].mean()) for f in feature_order}
return TabularBundle(
name="heart-disease",
pipeline=pipeline,
feature_order=feature_order,
categorical=categorical,
numeric=numeric,
class_labels=["Low risk", "Elevated risk"],
model_label="GradientBoosting (UCI Cleveland Heart)",
target_type="binary",
baseline=baseline,
positive_class="Elevated risk",
)
def _build_wine() -> TabularBundle:
path = os.path.join(_DATA_DIR, "wine_red.csv")
df = pd.read_csv(path, sep=";")
df.columns = [c.strip().replace(" ", "_") for c in df.columns]
df = df.dropna()
# Bin quality β 3 classes
def _bin(q: float) -> int:
if q <= 4:
return 0 # low
if q <= 6:
return 1 # medium
return 2 # high
df["target"] = df["quality"].apply(_bin)
feature_order = [
"alcohol", "volatile_acidity", "sulphates", "citric_acid",
"residual_sugar", "chlorides", "pH", "density",
]
numeric = feature_order[:]
categorical: list[str] = []
preprocessor = ColumnTransformer(
transformers=[("num", StandardScaler(), numeric)]
)
pipeline = Pipeline([
("prep", preprocessor),
("clf", GradientBoostingClassifier(n_estimators=200, max_depth=3, random_state=0)),
])
pipeline.fit(df[feature_order], df["target"])
baseline = {f: float(df[f].mean()) for f in feature_order}
return TabularBundle(
name="wine-quality",
pipeline=pipeline,
feature_order=feature_order,
categorical=categorical,
numeric=numeric,
class_labels=["Low (β€4)", "Medium (5β6)", "High (β₯7)"],
model_label="GradientBoosting (Wine Quality β Red)",
target_type="multiclass",
baseline=baseline,
positive_class=None,
)
_BUILDERS: dict[str, Callable[[], TabularBundle]] = {
"titanic-survival": _build_titanic,
"heart-disease": _build_heart,
"wine-quality": _build_wine,
}
def get_bundle(name: str) -> TabularBundle:
if name in _bundles:
return _bundles[name]
with _lock:
if name in _bundles:
return _bundles[name]
if name not in _BUILDERS:
raise KeyError(f"Unknown tabular bundle: {name}")
_bundles[name] = _BUILDERS[name]()
return _bundles[name]
def schema_summary(name: str) -> dict[str, Any]:
"""Return baseline/metadata for warmup introspection."""
bundle = get_bundle(name)
return {
"name": bundle.name,
"model": bundle.model_label,
"features": bundle.feature_order,
"numeric": bundle.numeric,
"categorical": bundle.categorical,
"classes": bundle.class_labels,
"target_type": bundle.target_type,
"baseline": bundle.baseline,
}
|