Update Dockerfile to include the specific r installation and package versions used in Version 2.0
Browse files- Dockerfile +20 -11
Dockerfile
CHANGED
|
@@ -1,23 +1,32 @@
|
|
| 1 |
-
FROM rocker/r-
|
| 2 |
|
| 3 |
-
# Install system dependencies
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4 |
RUN apt-get update && apt-get install -y \
|
| 5 |
libcurl4-openssl-dev \
|
| 6 |
libssl-dev \
|
| 7 |
libxml2-dev \
|
| 8 |
-
|
| 9 |
-
|
|
|
|
|
|
|
| 10 |
&& rm -rf /var/lib/apt/lists/*
|
| 11 |
|
| 12 |
WORKDIR /code
|
| 13 |
|
| 14 |
-
# Install
|
| 15 |
-
RUN R -e "install.packages('
|
| 16 |
-
&& R -e "
|
| 17 |
-
&& R -e "
|
| 18 |
-
&& R -e "
|
| 19 |
-
&& R -e "
|
| 20 |
-
|
|
|
|
|
|
|
| 21 |
COPY . .
|
| 22 |
|
| 23 |
CMD ["R", "--quiet", "-e", "shiny::runApp(host='0.0.0.0', port=7860)"]
|
|
|
|
| 1 |
+
FROM rocker/r-ver:4.5.2
|
| 2 |
|
| 3 |
+
# Install system dependencies for R packages
|
| 4 |
+
# - libcurl4-openssl-dev, libssl-dev: for httr/curl (ellmer dependency)
|
| 5 |
+
# - libxml2-dev: for xml2 (ellmer dependency)
|
| 6 |
+
# - libpoppler-cpp-dev: for pdftools
|
| 7 |
+
# - libmagick++-dev: for magick
|
| 8 |
+
# - libfontconfig1-dev, libfreetype6-dev: for magick text rendering
|
| 9 |
RUN apt-get update && apt-get install -y \
|
| 10 |
libcurl4-openssl-dev \
|
| 11 |
libssl-dev \
|
| 12 |
libxml2-dev \
|
| 13 |
+
libpoppler-cpp-dev \
|
| 14 |
+
libmagick++-dev \
|
| 15 |
+
libfontconfig1-dev \
|
| 16 |
+
libfreetype6-dev \
|
| 17 |
&& rm -rf /var/lib/apt/lists/*
|
| 18 |
|
| 19 |
WORKDIR /code
|
| 20 |
|
| 21 |
+
# Install remotes package first, then install specific versions of required packages
|
| 22 |
+
RUN R -e "install.packages('remotes', repos = 'https://cloud.r-project.org')" \
|
| 23 |
+
&& R -e "remotes::install_version('shiny', version = '1.12.1', repos = 'https://cloud.r-project.org')" \
|
| 24 |
+
&& R -e "remotes::install_version('purrr', version = '1.2.1', repos = 'https://cloud.r-project.org')" \
|
| 25 |
+
&& R -e "remotes::install_version('ellmer', version = '0.4.0', repos = 'https://cloud.r-project.org')" \
|
| 26 |
+
&& R -e "remotes::install_version('pdftools', version = '3.6.0', repos = 'https://cloud.r-project.org')" \
|
| 27 |
+
&& R -e "remotes::install_version('magick', version = '2.9.0', repos = 'https://cloud.r-project.org')" \
|
| 28 |
+
&& R -e "remotes::install_version('base64enc', version = '0.1.3', repos = 'https://cloud.r-project.org')"
|
| 29 |
+
|
| 30 |
COPY . .
|
| 31 |
|
| 32 |
CMD ["R", "--quiet", "-e", "shiny::runApp(host='0.0.0.0', port=7860)"]
|