| | import numpy as np |
| | import pandas as pd |
| | import matplotlib.pyplot as plt |
| | from ssms.config import model_config |
| | from ssms.basic_simulators.simulator import simulator |
| | from matplotlib.lines import Line2D |
| |
|
| |
|
| | def plot_func_model( |
| | model_name, |
| | theta, |
| | axis, |
| | value_range=None, |
| | n_samples=10, |
| | bin_size=0.05, |
| | add_data_rts=True, |
| | add_data_model_keep_slope=True, |
| | add_data_model_keep_boundary=True, |
| | add_data_model_keep_ndt=True, |
| | add_data_model_keep_starting_point=True, |
| | add_data_model_markersize_starting_point=50, |
| | add_data_model_markertype_starting_point=0, |
| | add_data_model_markershift_starting_point=0, |
| | n_trajectories = 0, |
| | linewidth_histogram=0.5, |
| | linewidth_model=0.5, |
| | legend_fontsize=12, |
| | legend_shadow=True, |
| | legend_location="upper right", |
| | data_color="blue", |
| | posterior_uncertainty_color="black", |
| | alpha=0.05, |
| | delta_t_model=0.001, |
| | random_state=None, |
| | add_legend=True, |
| | **kwargs, |
| | ): |
| | """Calculate posterior predictive for a certain bottom node. |
| | |
| | Arguments: |
| | bottom_node: pymc.stochastic |
| | Bottom node to compute posterior over. |
| | |
| | axis: matplotlib.axis |
| | Axis to plot into. |
| | |
| | value_range: numpy.ndarray |
| | Range over which to evaluate the likelihood. |
| | |
| | Optional: |
| | samples: int <default=10> |
| | Number of posterior samples to use. |
| | |
| | bin_size: float <default=0.05> |
| | Size of bins used for histograms |
| | |
| | alpha: float <default=0.05> |
| | alpha (transparency) level for the sample-wise elements of the plot |
| | |
| | add_data_rts: bool <default=True> |
| | Add data histogram of rts ? |
| | |
| | add_data_model: bool <default=True> |
| | Add model cartoon for data |
| | |
| | add_posterior_uncertainty_rts: bool <default=True> |
| | Add sample by sample histograms? |
| | |
| | add_posterior_mean_rts: bool <default=True> |
| | Add a mean posterior? |
| | |
| | add_model: bool <default=True> |
| | Whether to add model cartoons to the plot. |
| | |
| | linewidth_histogram: float <default=0.5> |
| | linewdith of histrogram plot elements. |
| | |
| | linewidth_model: float <default=0.5> |
| | linewidth of plot elements concerning the model cartoons. |
| | |
| | legend_location: str <default='upper right'> |
| | string defining legend position. Find the rest of the options in the matplotlib documentation. |
| | |
| | legend_shadow: bool <default=True> |
| | Add shadow to legend box? |
| | |
| | legend_fontsize: float <default=12> |
| | Fontsize of legend. |
| | |
| | data_color : str <default="blue"> |
| | Color for the data part of the plot. |
| | |
| | posterior_mean_color : str <default="red"> |
| | Color for the posterior mean part of the plot. |
| | |
| | posterior_uncertainty_color : str <default="black"> |
| | Color for the posterior uncertainty part of the plot. |
| | |
| | delta_t_model: |
| | specifies plotting intervals for model cartoon elements of the graphs. |
| | """ |
| |
|
| | if value_range is None: |
| | |
| | raise NotImplementedError("value_range keyword argument must be supplied.") |
| |
|
| | if len(value_range) > 2: |
| | value_range = (value_range[0], value_range[-1]) |
| |
|
| | |
| | bins = np.arange(value_range[0], value_range[-1], bin_size) |
| |
|
| | if model_config[model_name]["nchoices"] > 2: |
| | raise ValueError("The model plot works only for 2 choice models at the moment") |
| |
|
| | |
| | |
| |
|
| | |
| | if random_state is not None: |
| | np.random.seed(random_state) |
| | |
| | rand_int = np.random.choice(400000000) |
| | sim_out = simulator(model = model_name, theta = theta, n_samples = n_samples, |
| | no_noise = False, delta_t = 0.001, |
| | bin_dim = None, random_state = rand_int) |
| | |
| | sim_out_traj = {} |
| | for i in range(n_trajectories): |
| | rand_int = np.random.choice(400000000) |
| | sim_out_traj[i] = simulator(model = model_name, theta = theta, n_samples = 1, |
| | no_noise = False, delta_t = 0.001, |
| | bin_dim = None, random_state = rand_int, smooth_unif = False) |
| |
|
| | sim_out_no_noise = simulator(model = model_name, theta = theta, n_samples = 1, |
| | no_noise = True, delta_t = 0.001, |
| | bin_dim = None, smooth_unif = False) |
| |
|
| | |
| | weights_up = np.tile( |
| | (1 / bin_size) / sim_out['rts'][(sim_out['rts'] != -999)].shape[0], |
| | reps=sim_out['rts'][(sim_out['rts'] != -999) & (sim_out['choices'] == 1)].shape[0], |
| | ) |
| | weights_down = np.tile( |
| | (1 / bin_size) / sim_out['rts'][(sim_out['rts'] != -999)].shape[0], |
| | reps=sim_out['rts'][(sim_out['rts'] != -999) & (sim_out['choices'] != 1)].shape[0], |
| | ) |
| |
|
| | (b_high, b_low) = (np.maximum(sim_out['metadata']['boundary'], 0), |
| | np.minimum((-1) * sim_out['metadata']['boundary'], 0)) |
| |
|
| | |
| | |
| |
|
| | ylim = kwargs.pop("ylim", 3) |
| | |
| | hist_histtype = kwargs.pop("hist_histtype", "step") |
| |
|
| | if ("ylim_high" in kwargs) and ("ylim_low" in kwargs): |
| | ylim_high = kwargs["ylim_high"] |
| | ylim_low = kwargs["ylim_low"] |
| | else: |
| | ylim_high = ylim |
| | ylim_low = -ylim |
| |
|
| | if ("hist_bottom_high" in kwargs) and ("hist_bottom_low" in kwargs): |
| | hist_bottom_high = kwargs["hist_bottom_high"] |
| | hist_bottom_low = kwargs["hist_bottom_low"] |
| | else: |
| | hist_bottom_high = b_high[0] |
| | hist_bottom_low = -b_low[0] |
| |
|
| | axis.set_xlim(value_range[0], value_range[-1]) |
| | axis.set_ylim(ylim_low, ylim_high) |
| | axis_twin_up = axis.twinx() |
| | axis_twin_down = axis.twinx() |
| | axis_twin_up.set_ylim(ylim_low, ylim_high) |
| | axis_twin_up.set_yticks([]) |
| | axis_twin_down.set_ylim(ylim_high, ylim_low) |
| | axis_twin_down.set_yticks([]) |
| | axis_twin_down.set_axis_off() |
| | axis_twin_up.set_axis_off() |
| |
|
| | axis_twin_up.hist( |
| | np.abs(sim_out['rts'][(sim_out['rts'] != -999) & (sim_out['choices'] == 1)]), |
| | bins=bins, |
| | weights=weights_up, |
| | histtype=hist_histtype, |
| | bottom=hist_bottom_high, |
| | alpha=1, |
| | color=data_color, |
| | edgecolor=data_color, |
| | linewidth=linewidth_histogram, |
| | zorder=-1, |
| | ) |
| |
|
| | axis_twin_down.hist( |
| | np.abs(sim_out['rts'][(sim_out['rts'] != -999) & (sim_out['choices'] != 1)]), |
| | bins=bins, |
| | weights=weights_down, |
| | histtype=hist_histtype, |
| | bottom=hist_bottom_low, |
| | alpha=1, |
| | color=data_color, |
| | edgecolor=data_color, |
| | linewidth=linewidth_histogram, |
| | zorder=-1, |
| | ) |
| |
|
| | |
| | j = 0 |
| | t_s = np.arange(0, sim_out['metadata']['max_t'], delta_t_model) |
| |
|
| | _add_model_cartoon_to_ax( |
| | sample=sim_out_no_noise, |
| | axis=axis, |
| | keep_slope=add_data_model_keep_slope, |
| | keep_boundary=add_data_model_keep_boundary, |
| | keep_ndt=add_data_model_keep_ndt, |
| | keep_starting_point=add_data_model_keep_starting_point, |
| | markersize_starting_point=add_data_model_markersize_starting_point, |
| | markertype_starting_point=add_data_model_markertype_starting_point, |
| | markershift_starting_point=add_data_model_markershift_starting_point, |
| | delta_t_graph=delta_t_model, |
| | sample_hist_alpha=alpha, |
| | lw_m=linewidth_model, |
| | ylim_low=ylim_low, |
| | ylim_high=ylim_high, |
| | t_s=t_s, |
| | color=posterior_uncertainty_color, |
| | zorder_cnt=j, |
| | ) |
| |
|
| | if n_trajectories > 0: |
| | _add_trajectories( |
| | axis=axis, |
| | sample=sim_out_traj, |
| | t_s=t_s, |
| | delta_t_graph=delta_t_model, |
| | n_trajectories=n_trajectories, |
| | **kwargs, |
| | ) |
| | |
| | return axis |
| |
|
| | |
| | def _add_trajectories( |
| | axis=None, |
| | sample=None, |
| | t_s=None, |
| | delta_t_graph=0.01, |
| | n_trajectories=10, |
| | supplied_trajectory=None, |
| | maxid_supplied_trajectory=1, |
| | highlight_trajectory_rt_choice=True, |
| | markersize_trajectory_rt_choice=50, |
| | markertype_trajectory_rt_choice="*", |
| | markercolor_trajectory_rt_choice="red", |
| | linewidth_trajectories=1, |
| | alpha_trajectories=0.5, |
| | color_trajectories="black", |
| | **kwargs, |
| | ): |
| | """Add trajectories to a given axis.""" |
| | |
| | if isinstance(markercolor_trajectory_rt_choice, str): |
| | markercolor_trajectory_rt_choice_dict = {} |
| | for value_ in sample[0]['metadata']['possible_choices']: |
| | markercolor_trajectory_rt_choice_dict[ |
| | value_ |
| | ] = markercolor_trajectory_rt_choice |
| | elif isinstance(markercolor_trajectory_rt_choice, list): |
| | cnt = 0 |
| | for value_ in sample[0]['metadata']['possible_choices']: |
| | markercolor_trajectory_rt_choice_dict[ |
| | value_ |
| | ] = markercolor_trajectory_rt_choice[cnt] |
| | cnt += 1 |
| | elif isinstance(markercolor_trajectory_rt_choice, dict): |
| | markercolor_trajectory_rt_choice_dict = markercolor_trajectory_rt_choice |
| | else: |
| | pass |
| |
|
| | |
| | if isinstance(color_trajectories, str): |
| | color_trajectories_dict = {} |
| | for value_ in sample[0]['metadata']['possible_choices']: |
| | color_trajectories_dict[value_] = color_trajectories |
| | elif isinstance(color_trajectories, list): |
| | cnt = 0 |
| | for value_ in sample[0]['metadata']['possible_choices']: |
| | color_trajectories_dict[value_] = color_trajectories[cnt] |
| | cnt += 1 |
| | elif isinstance(color_trajectories, dict): |
| | color_trajectories_dict = color_trajectories |
| | else: |
| | pass |
| |
|
| | |
| | (b_high, b_low) = (np.maximum(sample[0]['metadata']['boundary'], 0), |
| | np.minimum((-1) * sample[0]['metadata']['boundary'], 0)) |
| | |
| | b_h_init = b_high[0] |
| | b_l_init = b_low[0] |
| | n_roll = int((sample[0]['metadata']['t'][0] / delta_t_graph) + 1) |
| | b_high = np.roll(b_high, n_roll) |
| | b_high[:n_roll] = b_h_init |
| | b_low = np.roll(b_low, n_roll) |
| | b_low[:n_roll] = b_l_init |
| |
|
| | print(n_trajectories) |
| | |
| | for i in range(n_trajectories): |
| | tmp_traj = sample[i]['metadata']['trajectory'] |
| | tmp_traj_choice = float(sample[i]['choices'].flatten()) |
| | maxid = np.minimum(np.argmax(np.where(tmp_traj > -999)), t_s.shape[0]) |
| |
|
| | |
| | b_tmp = b_high[maxid + n_roll] if tmp_traj_choice > 0 else b_low[maxid + n_roll] |
| |
|
| | axis.plot( |
| | t_s[:maxid] + sample[i]['metadata']['t'][0], |
| | tmp_traj[:maxid], |
| | color=color_trajectories_dict[tmp_traj_choice], |
| | alpha=alpha_trajectories, |
| | linewidth=linewidth_trajectories, |
| | zorder=2000 + i, |
| | ) |
| |
|
| | if highlight_trajectory_rt_choice: |
| | axis.scatter( |
| | t_s[maxid] + sample[i]['metadata']['t'][0], |
| | b_tmp, |
| | |
| | markersize_trajectory_rt_choice, |
| | color=markercolor_trajectory_rt_choice_dict[tmp_traj_choice], |
| | alpha=1, |
| | marker=markertype_trajectory_rt_choice, |
| | zorder=2000 + i, |
| | ) |
| |
|
| | |
| | def _add_model_cartoon_to_ax( |
| | sample=None, |
| | axis=None, |
| | keep_slope=True, |
| | keep_boundary=True, |
| | keep_ndt=True, |
| | keep_starting_point=True, |
| | markersize_starting_point=80, |
| | markertype_starting_point=1, |
| | markershift_starting_point=-0.05, |
| | delta_t_graph=None, |
| | sample_hist_alpha=None, |
| | lw_m=None, |
| | tmp_label=None, |
| | ylim_low=None, |
| | ylim_high=None, |
| | t_s=None, |
| | zorder_cnt=1, |
| | color="black", |
| | ): |
| | |
| | (b_high, b_low) = (np.maximum(sample['metadata']['boundary'], 0), |
| | np.minimum((-1) * sample['metadata']['boundary'], 0)) |
| |
|
| | b_h_init = b_high[0] |
| | b_l_init = b_low[0] |
| | n_roll = int((sample['metadata']['t'][0] / delta_t_graph) + 1) |
| | b_high = np.roll(b_high, n_roll) |
| | b_high[:n_roll] = b_h_init |
| | b_low = np.roll(b_low, n_roll) |
| | b_low[:n_roll] = b_l_init |
| |
|
| | tmp_traj = sample["metadata"]["trajectory"] |
| | maxid = np.minimum(np.argmax(np.where(tmp_traj > -999)), |
| | t_s.shape[0]) |
| |
|
| | if keep_boundary: |
| | |
| | axis.plot( |
| | t_s, |
| | b_high[:t_s.shape[0]], |
| | color=color, |
| | alpha=1, |
| | zorder=1000 + zorder_cnt, |
| | linewidth=lw_m, |
| | label=tmp_label, |
| | ) |
| |
|
| | |
| | axis.plot( |
| | t_s, |
| | b_low[:t_s.shape[0]], |
| | color=color, |
| | alpha=1, |
| | zorder=1000 + zorder_cnt, |
| | linewidth=lw_m, |
| | ) |
| |
|
| | |
| | if keep_slope: |
| | axis.plot( |
| | t_s[:maxid] + sample['metadata']['t'][0], |
| | tmp_traj[:maxid], |
| | color=color, |
| | alpha=1, |
| | zorder=1000 + zorder_cnt, |
| | linewidth=lw_m, |
| | ) |
| |
|
| | |
| | if keep_ndt: |
| | axis.axvline( |
| | x=sample['metadata']['t'][0], |
| | ymin=ylim_low, |
| | ymax=ylim_high, |
| | color=color, |
| | linestyle="--", |
| | linewidth=lw_m, |
| | zorder=1000 + zorder_cnt, |
| | alpha=1, |
| | ) |
| | |
| | if keep_starting_point: |
| | axis.scatter( |
| | sample['metadata']['t'][0] + markershift_starting_point, |
| | b_low[0] + (sample['metadata']['z'][0] * (b_high[0] - b_low[0])), |
| | markersize_starting_point, |
| | marker=markertype_starting_point, |
| | color=color, |
| | alpha=1, |
| | zorder=1000 + zorder_cnt, |
| | ) |
| |
|
| | def plot_func_model_n( |
| | model_name, |
| | theta, |
| | axis, |
| | n_trajectories=10, |
| | value_range=None, |
| | bin_size=0.05, |
| | n_samples=10, |
| | linewidth_histogram=0.5, |
| | linewidth_model=0.5, |
| | legend_fontsize=7, |
| | legend_shadow=True, |
| | legend_location="upper right", |
| | delta_t_model=0.001, |
| | add_legend=True, |
| | alpha=1.0, |
| | keep_frame=False, |
| | random_state=None, |
| | **kwargs, |
| | ): |
| | """Calculate posterior predictive for a certain bottom node. |
| | |
| | Arguments: |
| | bottom_node: pymc.stochastic |
| | Bottom node to compute posterior over. |
| | |
| | axis: matplotlib.axis |
| | Axis to plot into. |
| | |
| | value_range: numpy.ndarray |
| | Range over which to evaluate the likelihood. |
| | |
| | Optional: |
| | samples: int <default=10> |
| | Number of posterior samples to use. |
| | |
| | bin_size: float <default=0.05> |
| | Size of bins used for histograms |
| | |
| | alpha: float <default=0.05> |
| | alpha (transparency) level for the sample-wise elements of the plot |
| | |
| | add_posterior_uncertainty_rts: bool <default=True> |
| | Add sample by sample histograms? |
| | |
| | add_posterior_mean_rts: bool <default=True> |
| | Add a mean posterior? |
| | |
| | add_model: bool <default=True> |
| | Whether to add model cartoons to the plot. |
| | |
| | linewidth_histogram: float <default=0.5> |
| | linewdith of histrogram plot elements. |
| | |
| | linewidth_model: float <default=0.5> |
| | linewidth of plot elements concerning the model cartoons. |
| | |
| | legend_loc: str <default='upper right'> |
| | string defining legend position. Find the rest of the options in the matplotlib documentation. |
| | |
| | legend_shadow: bool <default=True> |
| | Add shadow to legend box? |
| | |
| | legend_fontsize: float <default=12> |
| | Fontsize of legend. |
| | |
| | data_color : str <default="blue"> |
| | Color for the data part of the plot. |
| | |
| | posterior_mean_color : str <default="red"> |
| | Color for the posterior mean part of the plot. |
| | |
| | posterior_uncertainty_color : str <default="black"> |
| | Color for the posterior uncertainty part of the plot. |
| | |
| | |
| | delta_t_model: |
| | specifies plotting intervals for model cartoon elements of the graphs. |
| | """ |
| |
|
| | color_dict = { |
| | -1: "black", |
| | 0: "black", |
| | 1: "green", |
| | 2: "blue", |
| | 3: "red", |
| | 4: "orange", |
| | 5: "purple", |
| | 6: "brown", |
| | } |
| |
|
| | |
| | if value_range is None: |
| | |
| | raise NotImplementedError("value_range keyword argument must be supplied.") |
| |
|
| | if len(value_range) > 2: |
| | value_range = (value_range[0], value_range[-1]) |
| |
|
| | |
| | bins = np.arange(value_range[0], value_range[-1], bin_size) |
| | |
| | ylim = kwargs.pop("ylim", 4) |
| |
|
| | axis.set_xlim(value_range[0], value_range[-1]) |
| | axis.set_ylim(0, ylim) |
| |
|
| | |
| |
|
| | |
| | |
| |
|
| | |
| | if random_state is not None: |
| | np.random.seed(random_state) |
| | |
| | rand_int = np.random.choice(400000000) |
| | sim_out = simulator(model = model_name, theta = theta, n_samples = n_samples, |
| | no_noise = False, delta_t = 0.001, |
| | bin_dim = None, random_state = rand_int) |
| | |
| | choices = sim_out['metadata']['possible_choices'] |
| | |
| | sim_out_traj = {} |
| | for i in range(n_trajectories): |
| | rand_int = np.random.choice(400000000) |
| | sim_out_traj[i] = simulator(model = model_name, theta = theta, n_samples = 1, |
| | no_noise = False, delta_t = 0.001, |
| | bin_dim = None, random_state = rand_int, smooth_unif = False) |
| |
|
| | sim_out_no_noise = simulator(model = model_name, theta = theta, n_samples = 1, |
| | no_noise = True, delta_t = 0.001, |
| | bin_dim = None, smooth_unif = False) |
| |
|
| | |
| | |
| |
|
| | |
| | j = 0 |
| | b = np.maximum(sim_out['metadata']['boundary'], 0) |
| | bottom = b[0] |
| | for choice in choices: |
| | tmp_label = None |
| |
|
| | if add_legend and j == 0: |
| | tmp_label = "PostPred" |
| |
|
| | weights = np.tile( |
| | (1 / bin_size) / sim_out['rts'].shape[0], |
| | reps=sim_out['rts'][(sim_out['choices'] == choice) & (sim_out['rts'] != -999)].shape[0], |
| | ) |
| |
|
| | axis.hist( |
| | np.abs(sim_out['rts'][(sim_out['choices'] == choice) & (sim_out['rts'] != -999)]), |
| | bins=bins, |
| | bottom=bottom, |
| | weights=weights, |
| | histtype="step", |
| | alpha=alpha, |
| | color=color_dict[choice], |
| | zorder=-1, |
| | label=tmp_label, |
| | linewidth=linewidth_histogram, |
| | ) |
| | j += 1 |
| |
|
| | |
| | tmp_label = None |
| | j = 0 |
| | t_s = np.arange(0, sim_out['metadata']['max_t'], delta_t_model) |
| |
|
| | if add_legend and (j == 0): |
| | tmp_label = "PostPred" |
| |
|
| | _add_model_n_cartoon_to_ax( |
| | sample=sim_out_no_noise, |
| | axis=axis, |
| | delta_t_graph=delta_t_model, |
| | sample_hist_alpha=alpha, |
| | lw_m=linewidth_model, |
| | tmp_label=tmp_label, |
| | linestyle="-", |
| | ylim=ylim, |
| | t_s=t_s, |
| | color_dict=color_dict, |
| | zorder_cnt=j, |
| | ) |
| |
|
| | if n_trajectories > 0: |
| | _add_trajectories_n( |
| | axis=axis, |
| | sample=sim_out_traj, |
| | t_s=t_s, |
| | delta_t_graph=delta_t_model, |
| | n_trajectories=n_trajectories, |
| | **kwargs, |
| | ) |
| |
|
| | if add_legend: |
| | custom_elems = [ |
| | Line2D([0], [0], color=color_dict[choice], lw=1) for choice in choices |
| | ] |
| | custom_titles = ["response: " + str(choice) for choice in choices] |
| |
|
| | custom_elems.append( |
| | Line2D([0], [0], color="black", lw=1.0, linestyle="dashed") |
| | ) |
| | |
| | |
| | |
| |
|
| | axis.legend( |
| | custom_elems, |
| | custom_titles, |
| | fontsize=legend_fontsize, |
| | shadow=legend_shadow, |
| | loc=legend_location, |
| | ) |
| |
|
| | |
| | if not keep_frame: |
| | axis.set_frame_on(False) |
| |
|
| | return axis |
| |
|
| | def _add_trajectories_n(axis=None, |
| | sample=None, |
| | t_s=None, |
| | delta_t_graph=0.01, |
| | n_trajectories=10, |
| | highlight_trajectory_rt_choice=True, |
| | markersize_trajectory_rt_choice=50, |
| | markertype_trajectory_rt_choice="*", |
| | markercolor_trajectory_rt_choice="black", |
| | linewidth_trajectories=1, |
| | alpha_trajectories=0.5, |
| | color_trajectories="black", |
| | **kwargs, |
| | ): |
| | |
| | """Add trajectories to a given axis.""" |
| | color_dict = { |
| | -1: "black", |
| | 0: "black", |
| | 1: "green", |
| | 2: "blue", |
| | 3: "red", |
| | 4: "orange", |
| | 5: "purple", |
| | 6: "brown", |
| | } |
| |
|
| | |
| | if isinstance(color_trajectories, str): |
| | color_trajectories_dict = {} |
| | for value_ in sample[0]['metadata']['possible_choices']: |
| | color_trajectories_dict[value_] = color_trajectories |
| | elif isinstance(color_trajectories, list): |
| | cnt = 0 |
| | for value_ in sample[0]['metadata']['possible_choices']: |
| | color_trajectories_dict[value_] = color_trajectories[cnt] |
| | cnt += 1 |
| | elif isinstance(color_trajectories, dict): |
| | color_trajectories_dict = color_trajectories |
| | else: |
| | pass |
| |
|
| | |
| | b = np.maximum(sample[0]['metadata']['boundary'], 0) |
| | b_init = b[0] |
| | n_roll = int((sample[0]['metadata']['t'][0] / delta_t_graph) + 1) |
| | b = np.roll(b, n_roll) |
| | b[:n_roll] = b_init |
| |
|
| | |
| | for i in range(n_trajectories): |
| | tmp_traj = sample[i]['metadata']['trajectory'] |
| | tmp_traj_choice = float(sample[i]['choices'].flatten()) |
| |
|
| | for j in range(len(sample[i]['metadata']['possible_choices'])): |
| | tmp_maxid = np.minimum(np.argmax(np.where(tmp_traj[:, j] > -999)), t_s.shape[0]) |
| |
|
| | |
| | b_tmp = b[tmp_maxid + n_roll] |
| |
|
| | axis.plot( |
| | t_s[:tmp_maxid] + sample[i]['metadata']['t'][0], |
| | tmp_traj[:tmp_maxid, j], |
| | color=color_dict[j], |
| | alpha=alpha_trajectories, |
| | linewidth=linewidth_trajectories, |
| | zorder=2000 + i, |
| | ) |
| |
|
| | if highlight_trajectory_rt_choice and tmp_traj_choice == j: |
| | axis.scatter( |
| | t_s[tmp_maxid] + sample[i]['metadata']['t'][0], |
| | b_tmp, |
| | |
| | markersize_trajectory_rt_choice, |
| | color=color_dict[tmp_traj_choice], |
| | alpha=1, |
| | marker=markertype_trajectory_rt_choice, |
| | zorder=2000 + i, |
| | ) |
| | elif highlight_trajectory_rt_choice and tmp_traj_choice != j: |
| | axis.scatter( |
| | t_s[tmp_maxid] + sample[i]['metadata']['t'][0] + 0.05, |
| | tmp_traj[tmp_maxid, j], |
| | |
| | markersize_trajectory_rt_choice, |
| | color=color_dict[j], |
| | alpha=1, |
| | marker=5, |
| | zorder=2000 + i, |
| | ) |
| |
|
| | def _add_model_n_cartoon_to_ax( |
| | sample=None, |
| | axis=None, |
| | delta_t_graph=None, |
| | sample_hist_alpha=None, |
| | keep_boundary=True, |
| | keep_ndt=True, |
| | keep_slope=True, |
| | keep_starting_point=True, |
| | lw_m=None, |
| | linestyle="-", |
| | tmp_label=None, |
| | ylim=None, |
| | t_s=None, |
| | zorder_cnt=1, |
| | color_dict=None, |
| | ): |
| | |
| | b = np.maximum(sample['metadata']['boundary'], 0) |
| | b_init = b[0] |
| | n_roll = int((sample['metadata']['t'][0] / delta_t_graph) + 1) |
| | b = np.roll(b, n_roll) |
| | b[:n_roll] = b_init |
| |
|
| | |
| | if keep_boundary: |
| | axis.plot( |
| | t_s, |
| | b[:t_s.shape[0]], |
| | color="black", |
| | alpha=sample_hist_alpha, |
| | zorder=1000 + zorder_cnt, |
| | linewidth=lw_m, |
| | linestyle=linestyle, |
| | label=tmp_label, |
| | ) |
| |
|
| | |
| | if keep_starting_point: |
| | axis.axvline( |
| | x=sample['metadata']['t'][0], |
| | ymin=-ylim, |
| | ymax=ylim, |
| | color="black", |
| | linestyle=linestyle, |
| | linewidth=lw_m, |
| | alpha=sample_hist_alpha, |
| | ) |
| |
|
| | |
| | if keep_slope: |
| | tmp_traj = sample["metadata"]["trajectory"] |
| |
|
| | for i in range(len(sample["metadata"]["possible_choices"])): |
| | tmp_maxid = np.minimum(np.argmax(np.where(tmp_traj[:, i] > -999)), t_s.shape[0]) |
| |
|
| | |
| | axis.plot( |
| | t_s[:tmp_maxid] + sample['metadata']['t'][0], |
| | tmp_traj[:tmp_maxid, i], |
| | color=color_dict[i], |
| | linestyle=linestyle, |
| | alpha=sample_hist_alpha, |
| | zorder=1000 + zorder_cnt, |
| | linewidth=lw_m, |
| | ) |
| |
|
| | return b[0] |