Spaces:
Sleeping
Sleeping
fix: Adjust logging
Browse files- predict_chromosome.py +3 -4
predict_chromosome.py
CHANGED
|
@@ -136,8 +136,8 @@ def predict_and_write(
|
|
| 136 |
names=["chr", "start", "end", "anchor"],
|
| 137 |
) # read anchor list file
|
| 138 |
start_time = time.time()
|
| 139 |
-
|
| 140 |
-
|
| 141 |
chr_anchor_file = pd.read_csv(
|
| 142 |
os.path.join(full_matrix_dir, input_name),
|
| 143 |
delimiter="\t",
|
|
@@ -174,8 +174,7 @@ def predict_and_write(
|
|
| 174 |
cols = np.vectorize(anchor_to_locus(anchor_dict))(
|
| 175 |
chr_tile["anchor2"].values
|
| 176 |
) # convert anchor names to column indices
|
| 177 |
-
|
| 178 |
-
logger.debug(chr_tile)
|
| 179 |
sparse_matrix = csr_matrix(
|
| 180 |
(chr_tile["ratio"], (rows, cols)),
|
| 181 |
shape=(anchor_step, anchor_step),
|
|
|
|
| 136 |
names=["chr", "start", "end", "anchor"],
|
| 137 |
) # read anchor list file
|
| 138 |
start_time = time.time()
|
| 139 |
+
logger.info("anchor file")
|
| 140 |
+
logger.info(os.path.join(full_matrix_dir, input_name))
|
| 141 |
chr_anchor_file = pd.read_csv(
|
| 142 |
os.path.join(full_matrix_dir, input_name),
|
| 143 |
delimiter="\t",
|
|
|
|
| 174 |
cols = np.vectorize(anchor_to_locus(anchor_dict))(
|
| 175 |
chr_tile["anchor2"].values
|
| 176 |
) # convert anchor names to column indices
|
| 177 |
+
logger.info(chr_tile)
|
|
|
|
| 178 |
sparse_matrix = csr_matrix(
|
| 179 |
(chr_tile["ratio"], (rows, cols)),
|
| 180 |
shape=(anchor_step, anchor_step),
|