edmundmiller commited on
Commit
f4d15bb
·
unverified ·
1 Parent(s): 306adf3

fix: datasets => snapshot_download

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Files changed (1) hide show
  1. app.py +7 -5
app.py CHANGED
@@ -19,15 +19,17 @@ from huggingface_hub import from_pretrained_keras
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  model = from_pretrained_keras("funlab/DeepLoop-CPGZ-LoopDenoise")
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- from datasets import load_dataset
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- anchors = load_dataset("funlab/hg19_HindIII_anchor_bed", data_files="*.bed")
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- full_matrix = load_dataset("funlab/HiCorr_test_data", data_files="*.chr11*")
 
 
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  predict_and_write(
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  model,
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- full_matrix_dir=full_matrix,
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- input_name=f"anchor_2_anchor.loop.{chromosome}.p_val",
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  outdir="results",
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  anchor_dir=anchors,
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  chromosome=chromosome,
 
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  model = from_pretrained_keras("funlab/DeepLoop-CPGZ-LoopDenoise")
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+ from huggingface_hub import snapshot_download
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+ anchors = snapshot_download(
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+ repo_id="funlab/hg19_HindIII_anchor_bed", repo_type="dataset"
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+ )
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+ HiCorr_data = snapshot_download("funlab/HiCorr_test_data", repo_type="dataset")
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  predict_and_write(
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  model,
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+ full_matrix_dir=HiCorr_data + f"anchor_2_anchor.loop.{chromosome}",
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+ input_name=HiCorr_data + f"anchor_2_anchor.loop.{chromosome}.p_val",
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  outdir="results",
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  anchor_dir=anchors,
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  chromosome=chromosome,