AtSRGA / setup.R
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Update setup.R
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packages <- c("shiny", "shinydashboard", "shinyWidgets",
"DT", "ggplot2", "dplyr", "tibble", "htmlwidgets", "plotly",
"heatmaply", "magrittr", "openxlsx", "markdown")
if (length(setdiff(packages, installed.packages()[, "Package"])) > 0) {
install.packages(setdiff(packages, rownames(installed.packages())))
}
BCpackages <- c("genefilter", "clusterProfiler", "org.At.tair.db")
if (length(setdiff(BCpackages, installed.packages()[, "Package"])) > 0) {
BiocManager::install(setdiff(BCpackages, rownames(installed.packages())))
}
sapply(c(packages, BCpackages), require, character.only=T)
print(sapply(c(packages, BCpackages), require, character.only=T))