scripts/processes/discipline_databases/discipline_profiles.json

{
  "biology": {
    "displayName": "Biology",
    "slug": "biology",
    "databaseDir": "biology-processes-database",
    "tableFile": "biology-database-table.html",
    "accent": "#16a34a",
    "subtitle": "Pathways, mechanisms, assay protocols, organisms, and biological systems.",
    "lensTitle": "Biological Lens",
    "lensDescription": "Browse by pathway, mechanism, protocol, organismal scale, and experimental context.",
    "facetLabels": {
      "subcategory": "Process Type",
      "collection": "Theme",
      "complexity": "Complexity"
    },
    "insightCards": [
      {
        "label": "Best for",
        "value": "pathways, mechanisms, assays"
      },
      {
        "label": "Research links",
        "value": "PubMed and BioRxiv/MedRxiv searches"
      },
      {
        "label": "Expansion focus",
        "value": "organismal biology, immunology, development, ecology"
      }
    ],
    "frontierSearches": [
      {
        "label": "PubMed",
        "urlTemplate": "https://pubmed.ncbi.nlm.nih.gov/?term={query}"
      },
      {
        "label": "BioRxiv",
        "urlTemplate": "https://www.biorxiv.org/search/{query}"
      },
      {
        "label": "MedRxiv",
        "urlTemplate": "https://www.medrxiv.org/search/{query}"
      }
    ],
    "contextColumnLabel": "Organism",
    "defaultContext": "General biology",
    "supportedGraphTypes": [
      "flowchart",
      "taxonomy",
      "lineage_tree",
      "state_transition",
      "influence_network"
    ],
    "metricColumns": [
      {
        "id": "nodes",
        "label": "Nodes"
      },
      {
        "id": "edges",
        "label": "Edges"
      },
      {
        "id": "conditionals",
        "label": "Conditionals"
      },
      {
        "id": "andGates",
        "label": "AND Gates"
      },
      {
        "id": "orGates",
        "label": "OR Gates"
      },
      {
        "id": "notGates",
        "label": "NOT Gates"
      },
      {
        "id": "loops",
        "label": "Loops"
      }
    ],
    "graphTypeLabels": {
      "flowchart": "Flowchart",
      "dependency_graph": "Dependency Graph",
      "taxonomy": "Taxonomy",
      "lineage_tree": "Lineage Tree",
      "influence_network": "Influence Network",
      "state_transition": "State Transition",
      "timeline": "Timeline"
    },
    "featuredMaps": [
      {
        "label": "Whole of Life Map",
        "url": "whole-of-life.html",
        "description": "Interactive taxonomy pilot spanning Life, domains, major clades, representative organisms, and process links."
      }
    ]
  },
  "chemistry": {
    "displayName": "Chemistry",
    "slug": "chemistry",
    "databaseDir": "chemistry-processes-database",
    "tableFile": "chemistry-database-table.html",
    "accent": "#dc2626",
    "subtitle": "Reactions, measurements, synthesis workflows, materials, and molecular models.",
    "lensTitle": "Chemical Lens",
    "lensDescription": "Browse by branch, reaction type, instrumentation, thermodynamic or kinetic emphasis.",
    "facetLabels": {
      "subcategory": "Branch",
      "collection": "Collection",
      "complexity": "Complexity"
    },
    "insightCards": [
      {
        "label": "Best for",
        "value": "reaction mechanisms, analytical methods, synthesis"
      },
      {
        "label": "Research links",
        "value": "PubMed, arXiv, and DOI searches"
      },
      {
        "label": "Curation focus",
        "value": "collapse duplicated branch templates and highlight curated reactions"
      }
    ],
    "frontierSearches": [
      {
        "label": "PubMed",
        "urlTemplate": "https://pubmed.ncbi.nlm.nih.gov/?term={query}+chemistry"
      },
      {
        "label": "arXiv",
        "urlTemplate": "https://arxiv.org/search/?query={query}&searchtype=all"
      },
      {
        "label": "Crossref",
        "urlTemplate": "https://search.crossref.org/?q={query}"
      }
    ],
    "contextColumnLabel": "Branch / Material System",
    "defaultContext": "General chemistry",
    "supportedGraphTypes": [
      "flowchart",
      "taxonomy",
      "dependency_graph",
      "state_transition"
    ],
    "metricColumns": [
      {
        "id": "nodes",
        "label": "Nodes"
      },
      {
        "id": "edges",
        "label": "Edges"
      },
      {
        "id": "conditionals",
        "label": "Conditionals"
      },
      {
        "id": "andGates",
        "label": "AND Gates"
      },
      {
        "id": "orGates",
        "label": "OR Gates"
      },
      {
        "id": "notGates",
        "label": "NOT Gates"
      },
      {
        "id": "loops",
        "label": "Loops"
      }
    ],
    "graphTypeLabels": {
      "flowchart": "Flowchart",
      "dependency_graph": "Dependency Graph",
      "taxonomy": "Taxonomy",
      "lineage_tree": "Lineage Tree",
      "influence_network": "Influence Network",
      "state_transition": "State Transition",
      "timeline": "Timeline"
    },
    "featuredMaps": [
      {
        "label": "Whole of Chemistry",
        "url": "whole-of-chemistry.html",
        "description": "Chemistry benefits from a hybrid of branch taxonomy, reaction families, analytical methods, materials systems, and process links."
      }
    ]
  },
  "physics": {
    "displayName": "Physics",
    "slug": "physics",
    "databaseDir": "physics-processes-database",
    "tableFile": "physics-database-table.html",
    "accent": "#2563eb",
    "subtitle": "Models, regimes, laws, observables, and physical mechanisms.",
    "lensTitle": "Physics Lens",
    "lensDescription": "Browse by regime, governing law, observable, idealization level, and scale.",
    "facetLabels": {
      "subcategory": "Current Folder",
      "collection": "Domain",
      "complexity": "Complexity"
    },
    "insightCards": [
      {
        "label": "Best for",
        "value": "models, regimes, observables"
      },
      {
        "label": "Research links",
        "value": "arXiv and NASA ADS searches"
      },
      {
        "label": "Curation focus",
        "value": "normalize domain names where folder names drift"
      }
    ],
    "frontierSearches": [
      {
        "label": "arXiv",
        "urlTemplate": "https://arxiv.org/search/?query={query}&searchtype=all"
      },
      {
        "label": "NASA ADS",
        "urlTemplate": "https://ui.adsabs.harvard.edu/search/q={query}"
      },
      {
        "label": "Crossref",
        "urlTemplate": "https://search.crossref.org/?q={query}"
      }
    ],
    "contextColumnLabel": "Regime / System",
    "defaultContext": "Physical system",
    "supportedGraphTypes": [
      "flowchart",
      "taxonomy",
      "dependency_graph",
      "state_transition",
      "timeline"
    ],
    "metricColumns": [
      {
        "id": "nodes",
        "label": "Nodes"
      },
      {
        "id": "edges",
        "label": "Edges"
      },
      {
        "id": "conditionals",
        "label": "Conditionals"
      },
      {
        "id": "andGates",
        "label": "AND Gates"
      },
      {
        "id": "orGates",
        "label": "OR Gates"
      },
      {
        "id": "notGates",
        "label": "NOT Gates"
      },
      {
        "id": "loops",
        "label": "Loops"
      }
    ],
    "graphTypeLabels": {
      "flowchart": "Flowchart",
      "dependency_graph": "Dependency Graph",
      "taxonomy": "Taxonomy",
      "lineage_tree": "Lineage Tree",
      "influence_network": "Influence Network",
      "state_transition": "State Transition",
      "timeline": "Timeline"
    },
    "featuredMaps": [
      {
        "label": "Whole of Physics",
        "url": "whole-of-physics.html",
        "description": "Physics is best treated as a regime/theory map over scales, governing laws, observables, and processes."
      },
      {
        "label": "Physical Universe Map",
        "url": "physical-universe-map.html",
        "description": "Conceptual scale-and-theory map of the physical universe."
      }
    ]
  },
  "computer_science": {
    "displayName": "Computer Science",
    "slug": "computer_science",
    "databaseDir": "computer-science-processes-database",
    "tableFile": "computer-science-database-table.html",
    "accent": "#7c3aed",
    "subtitle": "Algorithms, systems, networks, security, machine learning, and software workflows.",
    "lensTitle": "Computer Science Lens",
    "lensDescription": "Browse by algorithmic complexity, execution environment, invariants, and failure mode.",
    "facetLabels": {
      "subcategory": "Area",
      "collection": "Lens",
      "complexity": "Complexity"
    },
    "insightCards": [
      {
        "label": "Best for",
        "value": "algorithms, systems, security, ML pipelines"
      },
      {
        "label": "Research links",
        "value": "arXiv, Semantic Scholar, and Crossref"
      },
      {
        "label": "Curation focus",
        "value": "separate theory, implementation, and operational concerns"
      }
    ],
    "frontierSearches": [
      {
        "label": "arXiv",
        "urlTemplate": "https://arxiv.org/search/cs?query={query}&searchtype=all"
      },
      {
        "label": "Crossref",
        "urlTemplate": "https://search.crossref.org/?q={query}+computer+science"
      },
      {
        "label": "Semantic Scholar",
        "urlTemplate": "https://www.semanticscholar.org/search?q={query}"
      }
    ],
    "contextColumnLabel": "System / Data Type",
    "defaultContext": "Computing system",
    "supportedGraphTypes": [
      "flowchart",
      "dependency_graph",
      "taxonomy",
      "state_transition",
      "influence_network"
    ],
    "metricColumns": [
      {
        "id": "nodes",
        "label": "Nodes"
      },
      {
        "id": "edges",
        "label": "Edges"
      },
      {
        "id": "conditionals",
        "label": "Conditionals"
      },
      {
        "id": "andGates",
        "label": "AND Gates"
      },
      {
        "id": "orGates",
        "label": "OR Gates"
      },
      {
        "id": "notGates",
        "label": "NOT Gates"
      },
      {
        "id": "loops",
        "label": "Loops"
      }
    ],
    "graphTypeLabels": {
      "flowchart": "Flowchart",
      "dependency_graph": "Dependency Graph",
      "taxonomy": "Taxonomy",
      "lineage_tree": "Lineage Tree",
      "influence_network": "Influence Network",
      "state_transition": "State Transition",
      "timeline": "Timeline"
    },
    "featuredMaps": [
      {
        "label": "Whole of Computer Science",
        "url": "whole-of-computer-science.html",
        "description": "Computer Science is strongest as a layered abstraction stack with dependency and process links."
      },
      {
        "label": "Computing Stack Map",
        "url": "computing-stack-map.html",
        "description": "Conceptual stack/subway map of computing layers and cross-cutting concerns."
      }
    ]
  },
  "mathematics": {
    "displayName": "Mathematics",
    "slug": "mathematics",
    "databaseDir": "mathematics-processes-database",
    "tableFile": "mathematics-database-table.html",
    "accent": "#0f766e",
    "subtitle": "Algorithms, axiomatic theories, dependency structures, mathematical lineages, and proof systems.",
    "lensTitle": "Mathematical Lens",
    "lensDescription": "Browse by domain, structure, proof dependency, algorithmic process, and intellectual lineage.",
    "facetLabels": {
      "subcategory": "Domain",
      "collection": "Structure",
      "complexity": "Complexity"
    },
    "insightCards": [
      {
        "label": "Best for",
        "value": "algorithms, dependency graphs, theorem structures"
      },
      {
        "label": "Research links",
        "value": "arXiv, MathWorld, and zbMATH-style searches"
      },
      {
        "label": "Expansion focus",
        "value": "proof dependencies, heredity graphs, collaboration networks"
      }
    ],
    "frontierSearches": [
      {
        "label": "arXiv",
        "urlTemplate": "https://arxiv.org/search/math?query={query}&searchtype=all"
      },
      {
        "label": "MathWorld",
        "urlTemplate": "https://mathworld.wolfram.com/search/?query={query}"
      }
    ],
    "contextColumnLabel": "Domain / Structure",
    "defaultContext": "Mathematical structure",
    "supportedGraphTypes": [
      "flowchart",
      "dependency_graph",
      "lineage_tree",
      "influence_network",
      "taxonomy",
      "timeline"
    ],
    "metricColumns": [
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        "label": "Edges"
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        "label": "Conditionals"
      },
      {
        "id": "andGates",
        "label": "AND Gates"
      },
      {
        "id": "orGates",
        "label": "OR Gates"
      },
      {
        "id": "notGates",
        "label": "NOT Gates"
      },
      {
        "id": "loops",
        "label": "Loops"
      }
    ],
    "graphTypeLabels": {
      "flowchart": "Flowchart",
      "dependency_graph": "Dependency Graph",
      "taxonomy": "Taxonomy",
      "lineage_tree": "Lineage Tree",
      "influence_network": "Influence Network",
      "state_transition": "State Transition",
      "timeline": "Timeline"
    }
  }
}