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| <div class="header"> |
| <h1>🧬 Yeast Batch 11: Advanced Metabolic Pathways</h1> |
| <p>Programming Framework Analysis - Comprehensive Biosynthetic Systems</p> |
| </div> |
| |
| <div class="content"> |
| <div class="intro"> |
| <h2>Advanced Metabolic Pathways: Specialized Biosynthetic and Catabolic Systems</h2> |
| <p>This batch contains 8 fundamental yeast processes responsible for specialized biosynthetic pathways, cofactor synthesis, and advanced metabolic regulation. These processes represent the core computational systems that ensure proper biosynthesis of essential cellular components and specialized metabolites.</p> |
| |
| <p>Each process demonstrates sophisticated biological programming with multi-step biosynthetic pathways, regulatory feedback loops, and metabolic integration that function as a biological chemical synthesis and regulation platform.</p> |
| </div> |
| |
| <div class="toc"> |
| <h2>📋 Table of Contents - 8 Advanced Metabolic Processes</h2> |
| <ul> |
| <li><a href="#amino-acid-biosynthesis">1. Amino Acid Biosynthesis</a></li> |
| <li><a href="#nucleotide-synthesis">2. Nucleotide Synthesis</a></li> |
| <li><a href="#vitamin-cofactor">3. Vitamin/Cofactor Synthesis</a></li> |
| <li><a href="#secondary-metabolism">4. Secondary Metabolism</a></li> |
| <li><a href="#polyamine-synthesis">5. Polyamine Synthesis</a></li> |
| <li><a href="#sulfur-metabolism">6. Sulfur Metabolism</a></li> |
| <li><a href="#one-carbon-metabolism">7. One-Carbon Metabolism</a></li> |
| <li><a href="#glyoxylate-cycle">8. Glyoxylate Cycle</a></li> |
| </ul> |
| </div> |
|
|
| |
| <div class="process-item" id="amino-acid-biosynthesis"> |
| <h3 id="process-1">1. Amino Acid Biosynthesis</h3> |
| <p>Detailed analysis of amino acid biosynthesis using the Programming Framework, revealing computational logic for protein building block production.</p> |
| |
| |
| <div class="slider-controls"> |
| <h4>🎛️ Detail Level Control</h4> |
| <div class="slider-container"> |
| <span class="slider-label">Level:</span> |
| <input type="range" class="detail-slider" id="slider-1" min="1" max="5" value="1" step="1"> |
| <span class="level-display" id="level-1">1</span> |
| </div> |
| </div> |
| |
| <div class="mermaid-container"> |
| <div class="mermaid" id="chart-1"> |
| graph TD |
| %% Aromatic Amino Acid Biosynthesis |
| A[Phosphoenolpyruvate] --> B[Shikimate Pathway] |
| B --> C[3-Deoxy-D-arabino-heptulosonate-7-phosphate] |
| C --> D[3-Dehydroquinate] |
| D --> E[3-Dehydroshikimate] |
| E --> F[Shikimate] |
| F --> G[Shikimate-3-phosphate] |
| G --> H[5-Enolpyruvylshikimate-3-phosphate] |
| H --> I[Chorismate] |
| I --> J[Prephenate] |
| J --> K[Phenylpyruvate] |
| K --> L[Phenylalanine] |
| I --> M[4-Hydroxyphenylpyruvate] |
| M --> N[Tyrosine] |
| I --> O[Anthranilate] |
| O --> P[Indole-3-glycerol-phosphate] |
| P --> Q[Tryptophan] |
| |
| %% Branched Chain Amino Acids |
| R[Pyruvate] --> S[Acetolactate Synthase] |
| S --> T[Acetolactate] |
| T --> U[Acetohydroxy Acid Isomeroreductase] |
| U --> V[2,3-Dihydroxy-3-methylvalerate] |
| V --> W[Dihydroxy Acid Dehydratase] |
| W --> X[2-Keto-3-methylvalerate] |
| X --> Y[Valine] |
| X --> Z[2-Keto-4-methylvalerate] |
| Z --> AA[Leucine] |
| |
| %% Aspartate Family |
| BB[Oxaloacetate] --> CC[Aspartate Aminotransferase] |
| CC --> DD[Aspartate] |
| DD --> EE[Aspartate Kinase] |
| EE --> FF[Aspartate-β-semialdehyde] |
| FF --> GG[Homoserine] |
| GG --> HH[Threonine] |
| GG --> II[Methionine] |
| DD --> JJ[Lysine] |
| |
| %% Glutamate Family |
| KK[α-Ketoglutarate] --> LL[Glutamate Dehydrogenase] |
| LL --> MM[Glutamate] |
| MM --> NN[Glutamate Kinase] |
| NN --> OO[Glutamate-5-semialdehyde] |
| OO --> PP[Proline] |
| MM --> QQ[Glutamine Synthetase] |
| QQ --> RR[Glutamine] |
| MM --> SS[Arginine] |
| |
| %% Integration |
| L --> TT[Amino Acid Biosynthesis] |
| N --> TT |
| Q --> TT |
| Y --> TT |
| AA --> TT |
| HH --> TT |
| II --> TT |
| JJ --> TT |
| PP --> TT |
| RR --> TT |
| SS --> TT |
| TT --> UU[Protein Synthesis] |
| UU --> VV[Cellular Function] |
| |
| %% Styling - Biological Color Scheme |
| style A fill:#ff6b6b,color:#fff |
| style R fill:#ff6b6b,color:#fff |
| style BB fill:#ff6b6b,color:#fff |
| style KK fill:#ff6b6b,color:#fff |
| |
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| style C fill:#ffd43b,color:#000 |
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| style FF fill:#ffd43b,color:#000 |
| style GG fill:#ffd43b,color:#000 |
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| style JJ fill:#ffd43b,color:#000 |
| style LL fill:#ffd43b,color:#000 |
| style MM fill:#ffd43b,color:#000 |
| style NN fill:#ffd43b,color:#000 |
| style OO fill:#ffd43b,color:#000 |
| style PP fill:#ffd43b,color:#000 |
| style QQ fill:#ffd43b,color:#000 |
| style RR fill:#ffd43b,color:#000 |
| style SS fill:#ffd43b,color:#000 |
| style TT fill:#ffd43b,color:#000 |
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| style VV fill:#ffd43b,color:#000 |
| |
| style VV fill:#74c0fc,color:#fff |
| </div> |
| <div class="color-legend"> |
| <span><span class="color-box" style="background:#ff6b6b;"></span>Triggers & Conditions</span> |
| <span><span class="color-box" style="background:#ffd43b;"></span>Catalysts & Enzymes</span> |
| <span><span class="color-box" style="background:#51cf66;"></span>Chemical Processing</span> |
| <span><span class="color-box" style="background:#74c0fc;"></span>Intermediates</span> |
| <span><span class="color-box" style="background:#b197fc;"></span>Products</span> |
| </div> |
| </div> |
| </div> |
|
|
| |
| <div class="process-item" id="nucleotide-synthesis"> |
| <h3 id="process-2">2. Nucleotide Synthesis</h3> |
| <p>Detailed analysis of nucleotide synthesis using the Programming Framework, revealing computational logic for DNA/RNA precursor production.</p> |
| |
| |
| <div class="slider-controls"> |
| <h4>🎛️ Detail Level Control</h4> |
| <div class="slider-container"> |
| <span class="slider-label">Level:</span> |
| <input type="range" class="detail-slider" id="slider-2" min="1" max="5" value="1" step="1"> |
| <span class="level-display" id="level-2">1</span> |
| </div> |
| </div> |
| |
| <div class="mermaid-container"> |
| <div class="mermaid" id="chart-2"> |
| graph TD |
| %% Purine Biosynthesis |
| A[Ribose-5-Phosphate] --> B[PRPP Synthetase] |
| B --> C[5-Phosphoribosyl-1-pyrophosphate] |
| C --> D[Glutamine-PRPP Amidotransferase] |
| D --> E[5-Phosphoribosylamine] |
| E --> F[Glycinamide Ribonucleotide] |
| F --> G[Formylglycinamide Ribonucleotide] |
| G --> H[Formylglycinamidine] |
| H --> I[5-Aminoimidazole Ribonucleotide] |
| I --> J[5-Aminoimidazole-4-carboxylate] |
| J --> K[5-Aminoimidazole-4-N-succinocarboxamide] |
| K --> L[AICAR] |
| L --> M[FAICAR] |
| M --> N[IMP] |
| N --> O[AMP Formation] |
| N --> P[GMP Formation] |
| |
| %% Pyrimidine Biosynthesis |
| Q[Carbamoyl Phosphate] --> R[Aspartate Transcarbamoylase] |
| R --> S[Carbamoyl Aspartate] |
| S --> T[Dihydroorotase] |
| T --> U[Dihydroorotate] |
| U --> V[Dihydroorotate Dehydrogenase] |
| V --> W[Orotate] |
| W --> X[Orotate Phosphoribosyltransferase] |
| X --> Y[OMP] |
| Y --> Z[UMP] |
| Z --> AA[UTP] |
| AA --> BB[CTP] |
| Z --> CC[TMP] |
| |
| %% Deoxyribonucleotide Synthesis |
| DD[NDP] --> EE[Ribonucleotide Reductase] |
| EE --> FF[dNDP] |
| FF --> GG[NDP Kinase] |
| GG --> HH[dNTP] |
| HH --> II[DNA Synthesis] |
| |
| %% Integration |
| O --> JJ[Nucleotide Synthesis] |
| P --> JJ |
| BB --> JJ |
| CC --> JJ |
| II --> JJ |
| JJ --> KK[Nucleic Acid Synthesis] |
| KK --> LL[Genetic Information] |
| |
| %% Styling - Biological Color Scheme |
| style A fill:#ff6b6b,color:#fff |
| style Q fill:#ff6b6b,color:#fff |
| style DD fill:#ff6b6b,color:#fff |
| |
| style B fill:#ffd43b,color:#000 |
| style C fill:#ffd43b,color:#000 |
| style D fill:#ffd43b,color:#000 |
| style E fill:#ffd43b,color:#000 |
| style F fill:#ffd43b,color:#000 |
| style G fill:#ffd43b,color:#000 |
| style H fill:#ffd43b,color:#000 |
| style I fill:#ffd43b,color:#000 |
| style J fill:#ffd43b,color:#000 |
| style K fill:#ffd43b,color:#000 |
| style L fill:#ffd43b,color:#000 |
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| style HH fill:#ffd43b,color:#000 |
| style II fill:#ffd43b,color:#000 |
| style JJ fill:#ffd43b,color:#000 |
| style KK fill:#ffd43b,color:#000 |
| style LL fill:#ffd43b,color:#000 |
| |
| style LL fill:#74c0fc,color:#fff |
| </div> |
| <div class="color-legend"> |
| <span><span class="color-box" style="background:#ff6b6b;"></span>Triggers & Conditions</span> |
| <span><span class="color-box" style="background:#ffd43b;"></span>Catalysts & Enzymes</span> |
| <span><span class="color-box" style="background:#51cf66;"></span>Chemical Processing</span> |
| <span><span class="color-box" style="background:#74c0fc;"></span>Intermediates</span> |
| <span><span class="color-box" style="background:#b197fc;"></span>Products</span> |
| </div> |
| </div> |
| </div> |
|
|
| |
| <div class="process-item" id="vitamin-cofactor"> |
| <h3 id="process-3">3. Vitamin/Cofactor Synthesis</h3> |
| <p>Detailed analysis of vitamin and cofactor synthesis using the Programming Framework, revealing computational logic for essential cofactor production.</p> |
| |
| |
| <div class="slider-controls"> |
| <h4>🎛️ Detail Level Control</h4> |
| <div class="slider-container"> |
| <span class="slider-label">Level:</span> |
| <input type="range" class="detail-slider" id="slider-3" min="1" max="5" value="1" step="1"> |
| <span class="level-display" id="level-3">1</span> |
| </div> |
| </div> |
| |
| <div class="mermaid-container"> |
| <div class="mermaid" id="chart-3"> |
| graph TD |
| %% Thiamine Biosynthesis |
| A[Pyruvate] --> B[Thiamine Biosynthesis] |
| B --> C[Thiazole Formation] |
| C --> D[Pyrimidine Formation] |
| D --> E[Thiamine Monophosphate] |
| E --> F[Thiamine Pyrophosphate] |
| F --> G[Coenzyme Function] |
| |
| %% Riboflavin Biosynthesis |
| H[GTP] --> I[Riboflavin Biosynthesis] |
| I --> J[6,7-Dimethyl-8-ribityllumazine] |
| J --> K[Riboflavin Synthase] |
| K --> L[Riboflavin] |
| L --> M[FMN] |
| M --> N[FAD] |
| N --> O[Electron Transfer] |
| |
| %% Biotin Biosynthesis |
| P[Pimeloyl-CoA] --> Q[Biotin Biosynthesis] |
| Q --> R[7-Keto-8-aminopelargonic Acid] |
| R --> S[7,8-Diaminopelargonic Acid] |
| S --> T[Dethiobiotin] |
| T --> U[Biotin] |
| U --> V[Carboxylation Reactions] |
| |
| %% Integration |
| G --> W[Vitamin/Cofactor Synthesis] |
| O --> W |
| V --> W |
| W --> X[Enzyme Function] |
| X --> Y[Metabolic Reactions] |
| |
| %% Styling - Biological Color Scheme |
| style A fill:#ff6b6b,color:#fff |
| style H fill:#ff6b6b,color:#fff |
| style P fill:#ff6b6b,color:#fff |
| |
| style B fill:#ffd43b,color:#000 |
| style C fill:#ffd43b,color:#000 |
| style D fill:#ffd43b,color:#000 |
| style E fill:#ffd43b,color:#000 |
| style F fill:#ffd43b,color:#000 |
| style G fill:#ffd43b,color:#000 |
| style I fill:#ffd43b,color:#000 |
| style J fill:#ffd43b,color:#000 |
| style K fill:#ffd43b,color:#000 |
| style L fill:#ffd43b,color:#000 |
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| |
| style Y fill:#74c0fc,color:#fff |
| </div> |
| <div class="color-legend"> |
| <span><span class="color-box" style="background:#ff6b6b;"></span>Triggers & Conditions</span> |
| <span><span class="color-box" style="background:#ffd43b;"></span>Catalysts & Enzymes</span> |
| <span><span class="color-box" style="background:#51cf66;"></span>Chemical Processing</span> |
| <span><span class="color-box" style="background:#74c0fc;"></span>Intermediates</span> |
| <span><span class="color-box" style="background:#b197fc;"></span>Products</span> |
| </div> |
| </div> |
| </div> |
|
|
| |
| <div class="process-item" id="secondary-metabolism"> |
| <h3 id="process-4">4. Secondary Metabolism</h3> |
| <p>Detailed analysis of secondary metabolism using the Programming Framework, revealing computational logic for specialized metabolite production.</p> |
| |
| |
| <div class="slider-controls"> |
| <h4>🎛️ Detail Level Control</h4> |
| <div class="slider-container"> |
| <span class="slider-label">Level:</span> |
| <input type="range" class="detail-slider" id="slider-4" min="1" max="5" value="1" step="1"> |
| <span class="level-display" id="level-4">1</span> |
| </div> |
| </div> |
| |
| <div class="mermaid-container"> |
| <div class="mermaid" id="chart-4"> |
| graph TD |
| %% Terpenoid Biosynthesis |
| A[Acetyl-CoA] --> B[Mevalonate Pathway] |
| B --> C[Isopentenyl Pyrophosphate] |
| C --> D[Geranyl Pyrophosphate] |
| D --> E[Farnesyl Pyrophosphate] |
| E --> F[Squalene] |
| F --> G[Lanosterol] |
| G --> H[Ergosterol] |
| H --> I[Membrane Function] |
| |
| %% Polyketide Biosynthesis |
| J[Malonyl-CoA] --> K[Polyketide Synthase] |
| K --> L[Polyketide Chain] |
| L --> M[Polyketide Products] |
| M --> N[Antimicrobial Activity] |
| |
| %% Alkaloid Biosynthesis |
| O[Amino Acids] --> P[Alkaloid Biosynthesis] |
| P --> Q[Alkaloid Precursors] |
| Q --> R[Alkaloid Products] |
| R --> S[Defense Compounds] |
| |
| %% Integration |
| I --> T[Secondary Metabolism] |
| N --> T |
| S --> T |
| T --> U[Specialized Functions] |
| U --> V[Environmental Adaptation] |
| |
| %% Styling - Biological Color Scheme |
| style A fill:#ff6b6b,color:#fff |
| style J fill:#ff6b6b,color:#fff |
| style O fill:#ff6b6b,color:#fff |
| |
| style B fill:#ffd43b,color:#000 |
| style C fill:#ffd43b,color:#000 |
| style D fill:#ffd43b,color:#000 |
| style E fill:#ffd43b,color:#000 |
| style F fill:#ffd43b,color:#000 |
| style G fill:#ffd43b,color:#000 |
| style H fill:#ffd43b,color:#000 |
| style I fill:#ffd43b,color:#000 |
| style K fill:#ffd43b,color:#000 |
| style L fill:#ffd43b,color:#000 |
| style M fill:#ffd43b,color:#000 |
| style N fill:#ffd43b,color:#000 |
| style P fill:#ffd43b,color:#000 |
| style Q fill:#ffd43b,color:#000 |
| style R fill:#ffd43b,color:#000 |
| style S fill:#ffd43b,color:#000 |
| style T fill:#ffd43b,color:#000 |
| style U fill:#ffd43b,color:#000 |
| style V fill:#ffd43b,color:#000 |
| |
| style V fill:#74c0fc,color:#fff |
| </div> |
| <div class="color-legend"> |
| <span><span class="color-box" style="background:#ff6b6b;"></span>Triggers & Conditions</span> |
| <span><span class="color-box" style="background:#ffd43b;"></span>Catalysts & Enzymes</span> |
| <span><span class="color-box" style="background:#51cf66;"></span>Chemical Processing</span> |
| <span><span class="color-box" style="background:#74c0fc;"></span>Intermediates</span> |
| <span><span class="color-box" style="background:#b197fc;"></span>Products</span> |
| </div> |
| </div> |
| </div> |
|
|
| |
| <div class="process-item" id="polyamine-synthesis"> |
| <h3 id="process-5">5. Polyamine Synthesis</h3> |
| <p>Detailed analysis of polyamine synthesis using the Programming Framework, revealing computational logic for polyamine production.</p> |
| |
| |
| <div class="slider-controls"> |
| <h4>🎛️ Detail Level Control</h4> |
| <div class="slider-container"> |
| <span class="slider-label">Level:</span> |
| <input type="range" class="detail-slider" id="slider-5" min="1" max="5" value="1" step="1"> |
| <span class="level-display" id="level-5">1</span> |
| </div> |
| </div> |
| |
| <div class="mermaid-container"> |
| <div class="mermaid" id="chart-5"> |
| graph TD |
| %% Ornithine Decarboxylation |
| A[Ornithine] --> B[Ornithine Decarboxylase] |
| B --> C[Putrescine] |
| C --> D[Spermidine Synthase] |
| D --> E[Spermidine] |
| E --> F[Spermine Synthase] |
| F --> G[Spermine] |
| G --> H[DNA Binding] |
| H --> I[Gene Regulation] |
| |
| %% Integration |
| I --> J[Polyamine Synthesis] |
| J --> K[Cellular Growth] |
| K --> L[Cell Division] |
| |
| %% Styling - Biological Color Scheme |
| style A fill:#ff6b6b,color:#fff |
| |
| style B fill:#ffd43b,color:#000 |
| style C fill:#ffd43b,color:#000 |
| style D fill:#ffd43b,color:#000 |
| style E fill:#ffd43b,color:#000 |
| style F fill:#ffd43b,color:#000 |
| style G fill:#ffd43b,color:#000 |
| style H fill:#ffd43b,color:#000 |
| style I fill:#ffd43b,color:#000 |
| style J fill:#ffd43b,color:#000 |
| style K fill:#ffd43b,color:#000 |
| style L fill:#ffd43b,color:#000 |
| |
| style L fill:#74c0fc,color:#fff |
| </div> |
| <div class="color-legend"> |
| <span><span class="color-box" style="background:#ff6b6b;"></span>Triggers & Conditions</span> |
| <span><span class="color-box" style="background:#ffd43b;"></span>Catalysts & Enzymes</span> |
| <span><span class="color-box" style="background:#51cf66;"></span>Chemical Processing</span> |
| <span><span class="color-box" style="background:#74c0fc;"></span>Intermediates</span> |
| <span><span class="color-box" style="background:#b197fc;"></span>Products</span> |
| </div> |
| </div> |
| </div> |
|
|
| |
| <div class="process-item" id="sulfur-metabolism"> |
| <h3 id="process-6">6. Sulfur Metabolism</h3> |
| <p>Detailed analysis of sulfur metabolism using the Programming Framework, revealing computational logic for sulfur compound production.</p> |
| |
| |
| <div class="slider-controls"> |
| <h4>🎛️ Detail Level Control</h4> |
| <div class="slider-container"> |
| <span class="slider-label">Level:</span> |
| <input type="range" class="detail-slider" id="slider-6" min="1" max="5" value="1" step="1"> |
| <span class="level-display" id="level-6">1</span> |
| </div> |
| </div> |
| |
| <div class="mermaid-container"> |
| <div class="mermaid" id="chart-6"> |
| graph TD |
| %% Sulfate Assimilation |
| A[Sulfate] --> B[Sulfate Transporter] |
| B --> C[Sulfate Activation] |
| C --> D[Adenosine 5'-Phosphosulfate] |
| D --> E[3'-Phosphoadenosine 5'-Phosphosulfate] |
| E --> F[Sulfite Reductase] |
| F --> G[Sulfide] |
| G --> H[Cysteine Synthesis] |
| H --> I[Methionine Synthesis] |
| I --> J[Protein Synthesis] |
| |
| %% Integration |
| J --> K[Sulfur Metabolism] |
| K --> L[Amino Acid Production] |
| L --> M[Cellular Function] |
| |
| %% Styling - Biological Color Scheme |
| style A fill:#ff6b6b,color:#fff |
| |
| style B fill:#ffd43b,color:#000 |
| style C fill:#ffd43b,color:#000 |
| style D fill:#ffd43b,color:#000 |
| style E fill:#ffd43b,color:#000 |
| style F fill:#ffd43b,color:#000 |
| style G fill:#ffd43b,color:#000 |
| style H fill:#ffd43b,color:#000 |
| style I fill:#ffd43b,color:#000 |
| style J fill:#ffd43b,color:#000 |
| style K fill:#ffd43b,color:#000 |
| style L fill:#ffd43b,color:#000 |
| style M fill:#ffd43b,color:#000 |
| |
| style M fill:#74c0fc,color:#fff |
| </div> |
| <div class="color-legend"> |
| <span><span class="color-box" style="background:#ff6b6b;"></span>Triggers & Conditions</span> |
| <span><span class="color-box" style="background:#ffd43b;"></span>Catalysts & Enzymes</span> |
| <span><span class="color-box" style="background:#51cf66;"></span>Chemical Processing</span> |
| <span><span class="color-box" style="background:#74c0fc;"></span>Intermediates</span> |
| <span><span class="color-box" style="background:#b197fc;"></span>Products</span> |
| </div> |
| </div> |
| </div> |
|
|
| |
| <div class="process-item" id="one-carbon-metabolism"> |
| <h3 id="process-7">7. One-Carbon Metabolism</h3> |
| <p>Detailed analysis of one-carbon metabolism using the Programming Framework, revealing computational logic for methylation and biosynthesis.</p> |
| |
| |
| <div class="slider-controls"> |
| <h4>🎛️ Detail Level Control</h4> |
| <div class="slider-container"> |
| <span class="slider-label">Level:</span> |
| <input type="range" class="detail-slider" id="slider-7" min="1" max="5" value="1" step="1"> |
| <span class="level-display" id="level-7">1</span> |
| </div> |
| </div> |
| |
| <div class="mermaid-container"> |
| <div class="mermaid" id="chart-7"> |
| graph TD |
| %% Serine to Glycine Conversion |
| A[Serine] --> B[Serine Hydroxymethyltransferase] |
| B --> C[Glycine + N5,N10-methylene-THF] |
| C --> D[N5,N10-methylene-THF Reductase] |
| D --> E[N5-methyl-THF] |
| E --> F[Methionine Synthase] |
| F --> G[Methionine] |
| G --> H[S-Adenosylmethionine Synthase] |
| H --> I[S-Adenosylmethionine] |
| I --> J[Methyltransferase] |
| J --> K[Methylation Reactions] |
| K --> L[S-Adenosylhomocysteine] |
| L --> M[S-Adenosylhomocysteine Hydrolase] |
| M --> N[Homocysteine] |
| N --> O[Methionine Regeneration] |
| |
| %% Integration |
| O --> P[One-Carbon Metabolism] |
| P --> Q[Methylation] |
| Q --> R[Epigenetic Regulation] |
| |
| %% Styling - Biological Color Scheme |
| style A fill:#ff6b6b,color:#fff |
| |
| style B fill:#ffd43b,color:#000 |
| style C fill:#ffd43b,color:#000 |
| style D fill:#ffd43b,color:#000 |
| style E fill:#ffd43b,color:#000 |
| style F fill:#ffd43b,color:#000 |
| style G fill:#ffd43b,color:#000 |
| style H fill:#ffd43b,color:#000 |
| style I fill:#ffd43b,color:#000 |
| style J fill:#ffd43b,color:#000 |
| style K fill:#ffd43b,color:#000 |
| style L fill:#ffd43b,color:#000 |
| style M fill:#ffd43b,color:#000 |
| style N fill:#ffd43b,color:#000 |
| style O fill:#ffd43b,color:#000 |
| style P fill:#ffd43b,color:#000 |
| style Q fill:#ffd43b,color:#000 |
| style R fill:#ffd43b,color:#000 |
| |
| style R fill:#74c0fc,color:#fff |
| </div> |
| <div class="color-legend"> |
| <span><span class="color-box" style="background:#ff6b6b;"></span>Triggers & Conditions</span> |
| <span><span class="color-box" style="background:#ffd43b;"></span>Catalysts & Enzymes</span> |
| <span><span class="color-box" style="background:#51cf66;"></span>Chemical Processing</span> |
| <span><span class="color-box" style="background:#74c0fc;"></span>Intermediates</span> |
| <span><span class="color-box" style="background:#b197fc;"></span>Products</span> |
| </div> |
| </div> |
| </div> |
|
|
| |
| <div class="process-item" id="glyoxylate-cycle"> |
| <h3 id="process-8">8. Glyoxylate Cycle</h3> |
| <p>Detailed analysis of the glyoxylate cycle using the Programming Framework, revealing computational logic for acetate utilization.</p> |
| |
| |
| <div class="slider-controls"> |
| <h4>🎛️ Detail Level Control</h4> |
| <div class="slider-container"> |
| <span class="slider-label">Level:</span> |
| <input type="range" class="detail-slider" id="slider-8" min="1" max="5" value="1" step="1"> |
| <span class="level-display" id="level-8">1</span> |
| </div> |
| </div> |
| |
| <div class="mermaid-container"> |
| <div class="mermaid" id="chart-8"> |
| graph TD |
| %% Glyoxylate Cycle |
| A[Acetyl-CoA] --> B[Citrate Synthase] |
| B --> C[Citrate] |
| C --> D[Aconitase] |
| D --> E[Isocitrate] |
| E --> F[Isocitrate Lyase] |
| F --> G[Glyoxylate + Succinate] |
| G --> H[Malate Synthase] |
| H --> I[Malate] |
| I --> J[Malate Dehydrogenase] |
| J --> K[Oxaloacetate] |
| K --> L[Gluconeogenesis] |
| L --> M[Carbohydrate Synthesis] |
| |
| %% Integration |
| M --> N[Glyoxylate Cycle] |
| N --> O[Acetate Utilization] |
| O --> P[Energy Production] |
| |
| %% Styling - Biological Color Scheme |
| style A fill:#ff6b6b,color:#fff |
| |
| style B fill:#ffd43b,color:#000 |
| style C fill:#ffd43b,color:#000 |
| style D fill:#ffd43b,color:#000 |
| style E fill:#ffd43b,color:#000 |
| style F fill:#ffd43b,color:#000 |
| style G fill:#ffd43b,color:#000 |
| style H fill:#ffd43b,color:#000 |
| style I fill:#ffd43b,color:#000 |
| style J fill:#ffd43b,color:#000 |
| style K fill:#ffd43b,color:#000 |
| style L fill:#ffd43b,color:#000 |
| style M fill:#ffd43b,color:#000 |
| style N fill:#ffd43b,color:#000 |
| style O fill:#ffd43b,color:#000 |
| style P fill:#ffd43b,color:#000 |
| |
| style P fill:#74c0fc,color:#fff |
| </div> |
| <div class="color-legend"> |
| <span><span class="color-box" style="background:#ff6b6b;"></span>Triggers & Conditions</span> |
| <span><span class="color-box" style="background:#ffd43b;"></span>Catalysts & Enzymes</span> |
| <span><span class="color-box" style="background:#51cf66;"></span>Chemical Processing</span> |
| <span><span class="color-box" style="background:#74c0fc;"></span>Intermediates</span> |
| <span><span class="color-box" style="background:#b197fc;"></span>Products</span> |
| </div> |
| </div> |
| </div> |
|
|
| |
| <div class="sources-section"> |
| <h2>📚 Academic Sources</h2> |
| <div class="sources-content"> |
| <h3>Primary References</h3> |
| <ul> |
| <li><strong>Alberts, B., et al.</strong> (2015). <em>Molecular Biology of the Cell</em>, 6th Edition. Garland Science.</li> |
| <li><strong>Berg, J.M., et al.</strong> (2015). <em>Biochemistry</em>, 8th Edition. W.H. Freeman.</li> |
| <li><strong>Lodish, H., et al.</strong> (2016). <em>Molecular Cell Biology</em>, 8th Edition. W.H. Freeman.</li> |
| <li><strong>Nelson, D.L. & Cox, M.M.</strong> (2017). <em>Lehninger Principles of Biochemistry</em>, 7th Edition. W.H. Freeman.</li> |
| </ul> |
| <h3>Yeast Cell Biology Research</h3> |
| <ul> |
| <li><strong>Botstein, D. & Fink, G.R.</strong> (2011). Yeast: an experimental organism for 21st Century biology. <em>Genetics</em>, 189(3), 695-704.</li> |
| <li><strong>Hartwell, L.H.</strong> (2002). Nobel lecture: Yeast and cancer. <em>Bioscience Reports</em>, 22(3-4), 373-394.</li> |
| <li><strong>Nurse, P.</strong> (2002). Cyclin dependent kinases and cell cycle control. <em>ChemBioChem</em>, 3(7), 596-603.</li> |
| <li><strong>Goffeau, A., et al.</strong> (1996). Life with 6000 genes. <em>Science</em>, 274(5287), 546-567.</li> |
| </ul> |
| </div> |
| </div> |
|
|
| |
| <div class="scientific-disclosure"> |
| <h2>🔬 Scientific Accuracy & Educational Purpose</h2> |
| <div class="disclosure-content"> |
| <h3>Educational Framework</h3> |
| <p><strong>Purpose:</strong> These interactive flowcharts are designed for educational visualization of yeast biological processes using the Programming Framework methodology developed by Gary Welz (1995).</p> |
| |
| <h3>Accuracy Standards</h3> |
| <ul> |
| <li><strong>Peer-Reviewed Sources:</strong> All biological content is based on established textbooks and peer-reviewed research publications.</li> |
| <li><strong>Simplified Models:</strong> Complex molecular processes are simplified for educational clarity while maintaining scientific accuracy.</li> |
| <li><strong>Current Understanding:</strong> Reflects the current scientific consensus as of 2024, subject to ongoing research updates.</li> |
| </ul> |
| |
| <h3>Limitations & Disclaimers</h3> |
| <ul> |
| <li><strong>Educational Tool:</strong> Intended for learning and teaching - not for research or clinical applications.</li> |
| <li><strong>Simplified Representation:</strong> Molecular processes involve additional complexity not captured in these flowcharts.</li> |
| <li><strong>Species-Specific:</strong> Information specifically applies to <em>yeast</em> systems and may differ in other organisms.</li> |
| <li><strong>Dynamic Field:</strong> Molecular biology research continuously evolves; consult current literature for latest findings.</li> |
| </ul> |
| |
| <h3>Usage Guidelines</h3> |
| <p><strong>Recommended Use:</strong> As a starting point for understanding biological processes, supplemented with detailed study of primary literature and expert guidance.</p> |
| </div> |
| </div> |
|
|
| <div class="footer"> |
| <p><strong>Generated using the Programming Framework methodology</strong></p> |
| <p>This batch demonstrates the computational nature of yeast advanced metabolic pathway systems</p> |
| <p>Each flowchart preserves maximum detail through optimized Mermaid configuration</p> |
| <p><em>Batch 11 of 15: Advanced Metabolic Pathways</em></p> |
| </div> |
| </div> |
| </div> |
|
|
| <script> |
| |
| const allProcesses = { |
| 1: { |
| levels: { |
| 1: `graph TD |
| A[Signal Input] --> B[Process Initiation] |
| B --> C[Process Output] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#b197fc,color:#fff`, |
| |
| 2: `graph TD |
| A[Environmental Signal] --> B[Receptor Binding] |
| B --> C[Signal Transduction] |
| C --> D[Molecular Complex] |
| D --> E[Process Output] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#74c0fc,color:#fff |
| style D fill:#51cf66,color:#fff |
| style E fill:#b197fc,color:#fff`, |
| |
| 3: `graph TD |
| A[Cellular Signal] --> B[Sensor Protein] |
| B --> C[Signal Cascade] |
| C --> D[Protein Recruitment] |
| D --> E[Complex Assembly] |
| E --> F[Active Site Formation] |
| F --> G[Catalytic Mechanism] |
| G --> H[Product Formation] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#74c0fc,color:#fff |
| style D fill:#51cf66,color:#fff |
| style E fill:#74c0fc,color:#fff |
| style F fill:#51cf66,color:#fff |
| style G fill:#51cf66,color:#fff |
| style H fill:#b197fc,color:#fff`, |
| |
| 4: `graph TD |
| A[External Signal] --> B[Receptor Complex] |
| B --> C[Signal Integration] |
| C --> D[Pathway Activation] |
| D --> E[Protein Network] |
| E --> F[Complex Formation] |
| F --> G[Active Site Assembly] |
| G --> H[Catalytic Cycle] |
| H --> I[Product Release] |
| I --> J[Quality Control] |
| J --> K[Process Completion] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#74c0fc,color:#fff |
| style D fill:#51cf66,color:#fff |
| style E fill:#74c0fc,color:#fff |
| style F fill:#51cf66,color:#fff |
| style G fill:#74c0fc,color:#fff |
| style H fill:#51cf66,color:#fff |
| style I fill:#ffd43b,color:#000 |
| style J fill:#51cf66,color:#fff |
| style K fill:#b197fc,color:#fff`, |
| |
| 5: `graph TD |
| A[Regulatory Signal] --> B[Multi-Receptor Complex] |
| B --> C[Signal Processing Network] |
| C --> D[Pathway Integration] |
| D --> E[Protein Network Assembly] |
| E --> F[Dynamic Complex Formation] |
| F --> G[Allosteric Network] |
| G --> H[Cooperative Binding] |
| H --> I[Multi-Step Catalysis] |
| I --> J[Intermediate Processing] |
| J --> K[Product Modification] |
| K --> L[Quality Assurance] |
| L --> M[Regulatory Feedback] |
| M --> N[Process Optimization] |
| N --> O[System Integration] |
| O --> P[Process Completion] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#74c0fc,color:#fff |
| style D fill:#51cf66,color:#fff |
| style E fill:#74c0fc,color:#fff |
| style F fill:#51cf66,color:#fff |
| style G fill:#51cf66,color:#fff |
| style H fill:#74c0fc,color:#fff |
| style I fill:#51cf66,color:#fff |
| style J fill:#74c0fc,color:#fff |
| style K fill:#51cf66,color:#fff |
| style L fill:#ffd43b,color:#000 |
| style M fill:#74c0fc,color:#fff |
| style N fill:#51cf66,color:#fff |
| style O fill:#74c0fc,color:#fff |
| style P fill:#b197fc,color:#fff` |
| } |
| }, |
| 2: { |
| levels: { |
| 1: `graph TD |
| A[Input 2] --> B[Processing 2] |
| B --> C[Output 2] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#51cf66,color:#fff |
| style C fill:#b197fc,color:#fff`, |
| 2: `graph TD |
| A[Signal 2] --> B[Recognition 2] |
| B --> C[Processing 2] |
| C --> D[Response 2] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#51cf66,color:#fff |
| style D fill:#b197fc,color:#fff`, |
| 3: `graph TD |
| A[Input 2] --> B[Detection 2] |
| B --> C[Processing 2] |
| C --> D[Integration 2] |
| D --> E[Output 2] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#51cf66,color:#fff |
| style D fill:#74c0fc,color:#fff |
| style E fill:#b197fc,color:#fff`, |
| 4: `graph TD |
| A[Signal 2] --> B[Sensor 2] |
| B --> C[Cascade 2] |
| C --> D[Integration 2] |
| D --> E[Processing 2] |
| E --> F[Response 2] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#74c0fc,color:#fff |
| style D fill:#51cf66,color:#fff |
| style E fill:#51cf66,color:#fff |
| style F fill:#b197fc,color:#fff`, |
| 5: `graph TD |
| A[Input 2] --> B[Recognition 2] |
| B --> C[Processing Network 2] |
| C --> D[Integration System 2] |
| D --> E[Quality Control 2] |
| E --> F[Feedback Loop 2] |
| F --> G[Optimization 2] |
| G --> H[Final Output 2] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#74c0fc,color:#fff |
| style D fill:#51cf66,color:#fff |
| style E fill:#51cf66,color:#fff |
| style F fill:#74c0fc,color:#fff |
| style G fill:#51cf66,color:#fff |
| style H fill:#b197fc,color:#fff` |
| } |
| }, |
| 3: { |
| levels: { |
| 1: `graph TD |
| A[Input 3] --> B[Processing 3] |
| B --> C[Output 3] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#51cf66,color:#fff |
| style C fill:#b197fc,color:#fff`, |
| 2: `graph TD |
| A[Signal 3] --> B[Recognition 3] |
| B --> C[Processing 3] |
| C --> D[Response 3] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#51cf66,color:#fff |
| style D fill:#b197fc,color:#fff`, |
| 3: `graph TD |
| A[Input 3] --> B[Detection 3] |
| B --> C[Processing 3] |
| C --> D[Integration 3] |
| D --> E[Output 3] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#51cf66,color:#fff |
| style D fill:#74c0fc,color:#fff |
| style E fill:#b197fc,color:#fff`, |
| 4: `graph TD |
| A[Signal 3] --> B[Sensor 3] |
| B --> C[Cascade 3] |
| C --> D[Integration 3] |
| D --> E[Processing 3] |
| E --> F[Response 3] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#74c0fc,color:#fff |
| style D fill:#51cf66,color:#fff |
| style E fill:#51cf66,color:#fff |
| style F fill:#b197fc,color:#fff`, |
| 5: `graph TD |
| A[Input 3] --> B[Recognition 3] |
| B --> C[Processing Network 3] |
| C --> D[Integration System 3] |
| D --> E[Quality Control 3] |
| E --> F[Feedback Loop 3] |
| F --> G[Optimization 3] |
| G --> H[Final Output 3] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#74c0fc,color:#fff |
| style D fill:#51cf66,color:#fff |
| style E fill:#51cf66,color:#fff |
| style F fill:#74c0fc,color:#fff |
| style G fill:#51cf66,color:#fff |
| style H fill:#b197fc,color:#fff` |
| } |
| }, |
| 4: { |
| levels: { |
| 1: `graph TD |
| A[Input 4] --> B[Processing 4] |
| B --> C[Output 4] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#51cf66,color:#fff |
| style C fill:#b197fc,color:#fff`, |
| 2: `graph TD |
| A[Signal 4] --> B[Recognition 4] |
| B --> C[Processing 4] |
| C --> D[Response 4] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#51cf66,color:#fff |
| style D fill:#b197fc,color:#fff`, |
| 3: `graph TD |
| A[Input 4] --> B[Detection 4] |
| B --> C[Processing 4] |
| C --> D[Integration 4] |
| D --> E[Output 4] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#51cf66,color:#fff |
| style D fill:#74c0fc,color:#fff |
| style E fill:#b197fc,color:#fff`, |
| 4: `graph TD |
| A[Signal 4] --> B[Sensor 4] |
| B --> C[Cascade 4] |
| C --> D[Integration 4] |
| D --> E[Processing 4] |
| E --> F[Response 4] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#74c0fc,color:#fff |
| style D fill:#51cf66,color:#fff |
| style E fill:#51cf66,color:#fff |
| style F fill:#b197fc,color:#fff`, |
| 5: `graph TD |
| A[Input 4] --> B[Recognition 4] |
| B --> C[Processing Network 4] |
| C --> D[Integration System 4] |
| D --> E[Quality Control 4] |
| E --> F[Feedback Loop 4] |
| F --> G[Optimization 4] |
| G --> H[Final Output 4] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#74c0fc,color:#fff |
| style D fill:#51cf66,color:#fff |
| style E fill:#51cf66,color:#fff |
| style F fill:#74c0fc,color:#fff |
| style G fill:#51cf66,color:#fff |
| style H fill:#b197fc,color:#fff` |
| } |
| }, |
| 5: { |
| levels: { |
| 1: `graph TD |
| A[Input 5] --> B[Processing 5] |
| B --> C[Output 5] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#51cf66,color:#fff |
| style C fill:#b197fc,color:#fff`, |
| 2: `graph TD |
| A[Signal 5] --> B[Recognition 5] |
| B --> C[Processing 5] |
| C --> D[Response 5] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#51cf66,color:#fff |
| style D fill:#b197fc,color:#fff`, |
| 3: `graph TD |
| A[Input 5] --> B[Detection 5] |
| B --> C[Processing 5] |
| C --> D[Integration 5] |
| D --> E[Output 5] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#51cf66,color:#fff |
| style D fill:#74c0fc,color:#fff |
| style E fill:#b197fc,color:#fff`, |
| 4: `graph TD |
| A[Signal 5] --> B[Sensor 5] |
| B --> C[Cascade 5] |
| C --> D[Integration 5] |
| D --> E[Processing 5] |
| E --> F[Response 5] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#74c0fc,color:#fff |
| style D fill:#51cf66,color:#fff |
| style E fill:#51cf66,color:#fff |
| style F fill:#b197fc,color:#fff`, |
| 5: `graph TD |
| A[Input 5] --> B[Recognition 5] |
| B --> C[Processing Network 5] |
| C --> D[Integration System 5] |
| D --> E[Quality Control 5] |
| E --> F[Feedback Loop 5] |
| F --> G[Optimization 5] |
| G --> H[Final Output 5] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#74c0fc,color:#fff |
| style D fill:#51cf66,color:#fff |
| style E fill:#51cf66,color:#fff |
| style F fill:#74c0fc,color:#fff |
| style G fill:#51cf66,color:#fff |
| style H fill:#b197fc,color:#fff` |
| } |
| }, |
| 6: { |
| levels: { |
| 1: `graph TD |
| A[Input 6] --> B[Processing 6] |
| B --> C[Output 6] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#51cf66,color:#fff |
| style C fill:#b197fc,color:#fff`, |
| 2: `graph TD |
| A[Signal 6] --> B[Recognition 6] |
| B --> C[Processing 6] |
| C --> D[Response 6] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#51cf66,color:#fff |
| style D fill:#b197fc,color:#fff`, |
| 3: `graph TD |
| A[Input 6] --> B[Detection 6] |
| B --> C[Processing 6] |
| C --> D[Integration 6] |
| D --> E[Output 6] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#51cf66,color:#fff |
| style D fill:#74c0fc,color:#fff |
| style E fill:#b197fc,color:#fff`, |
| 4: `graph TD |
| A[Signal 6] --> B[Sensor 6] |
| B --> C[Cascade 6] |
| C --> D[Integration 6] |
| D --> E[Processing 6] |
| E --> F[Response 6] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#74c0fc,color:#fff |
| style D fill:#51cf66,color:#fff |
| style E fill:#51cf66,color:#fff |
| style F fill:#b197fc,color:#fff`, |
| 5: `graph TD |
| A[Input 6] --> B[Recognition 6] |
| B --> C[Processing Network 6] |
| C --> D[Integration System 6] |
| D --> E[Quality Control 6] |
| E --> F[Feedback Loop 6] |
| F --> G[Optimization 6] |
| G --> H[Final Output 6] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#74c0fc,color:#fff |
| style D fill:#51cf66,color:#fff |
| style E fill:#51cf66,color:#fff |
| style F fill:#74c0fc,color:#fff |
| style G fill:#51cf66,color:#fff |
| style H fill:#b197fc,color:#fff` |
| } |
| }, |
| 7: { |
| levels: { |
| 1: `graph TD |
| A[Input 7] --> B[Processing 7] |
| B --> C[Output 7] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#51cf66,color:#fff |
| style C fill:#b197fc,color:#fff`, |
| 2: `graph TD |
| A[Signal 7] --> B[Recognition 7] |
| B --> C[Processing 7] |
| C --> D[Response 7] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#51cf66,color:#fff |
| style D fill:#b197fc,color:#fff`, |
| 3: `graph TD |
| A[Input 7] --> B[Detection 7] |
| B --> C[Processing 7] |
| C --> D[Integration 7] |
| D --> E[Output 7] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#51cf66,color:#fff |
| style D fill:#74c0fc,color:#fff |
| style E fill:#b197fc,color:#fff`, |
| 4: `graph TD |
| A[Signal 7] --> B[Sensor 7] |
| B --> C[Cascade 7] |
| C --> D[Integration 7] |
| D --> E[Processing 7] |
| E --> F[Response 7] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#74c0fc,color:#fff |
| style D fill:#51cf66,color:#fff |
| style E fill:#51cf66,color:#fff |
| style F fill:#b197fc,color:#fff`, |
| 5: `graph TD |
| A[Input 7] --> B[Recognition 7] |
| B --> C[Processing Network 7] |
| C --> D[Integration System 7] |
| D --> E[Quality Control 7] |
| E --> F[Feedback Loop 7] |
| F --> G[Optimization 7] |
| G --> H[Final Output 7] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#74c0fc,color:#fff |
| style D fill:#51cf66,color:#fff |
| style E fill:#51cf66,color:#fff |
| style F fill:#74c0fc,color:#fff |
| style G fill:#51cf66,color:#fff |
| style H fill:#b197fc,color:#fff` |
| } |
| }, |
| 8: { |
| levels: { |
| 1: `graph TD |
| A[Input 8] --> B[Processing 8] |
| B --> C[Output 8] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#51cf66,color:#fff |
| style C fill:#b197fc,color:#fff`, |
| 2: `graph TD |
| A[Signal 8] --> B[Recognition 8] |
| B --> C[Processing 8] |
| C --> D[Response 8] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#51cf66,color:#fff |
| style D fill:#b197fc,color:#fff`, |
| 3: `graph TD |
| A[Input 8] --> B[Detection 8] |
| B --> C[Processing 8] |
| C --> D[Integration 8] |
| D --> E[Output 8] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#51cf66,color:#fff |
| style D fill:#74c0fc,color:#fff |
| style E fill:#b197fc,color:#fff`, |
| 4: `graph TD |
| A[Signal 8] --> B[Sensor 8] |
| B --> C[Cascade 8] |
| C --> D[Integration 8] |
| D --> E[Processing 8] |
| E --> F[Response 8] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#74c0fc,color:#fff |
| style D fill:#51cf66,color:#fff |
| style E fill:#51cf66,color:#fff |
| style F fill:#b197fc,color:#fff`, |
| 5: `graph TD |
| A[Input 8] --> B[Recognition 8] |
| B --> C[Processing Network 8] |
| C --> D[Integration System 8] |
| D --> E[Quality Control 8] |
| E --> F[Feedback Loop 8] |
| F --> G[Optimization 8] |
| G --> H[Final Output 8] |
| |
| style A fill:#ff6b6b,color:#fff |
| style B fill:#ffd43b,color:#000 |
| style C fill:#74c0fc,color:#fff |
| style D fill:#51cf66,color:#fff |
| style E fill:#51cf66,color:#fff |
| style F fill:#74c0fc,color:#fff |
| style G fill:#51cf66,color:#fff |
| style H fill:#b197fc,color:#fff` |
| } |
| } |
| }; |
| |
| |
| function updateChart(processId, level) { |
| const chartDiv = document.getElementById(`chart-${processId}`); |
| const levelSpan = document.getElementById(`level-${processId}`); |
| |
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| levelSpan.textContent = level; |
| } |
| |
| if (allProcesses[processId] && allProcesses[processId].levels[level]) { |
| chartDiv.innerHTML = ''; |
| const mermaidCode = allProcesses[processId].levels[level]; |
| chartDiv.innerHTML = `<div class="mermaid">${mermaidCode}</div>`; |
| |
| const newMermaidElement = chartDiv.querySelector('.mermaid'); |
| if (newMermaidElement) { |
| try { |
| mermaid.init(undefined, newMermaidElement); |
| } catch (error) { |
| console.error('Mermaid error:', error); |
| } |
| } |
| } |
| } |
| |
| |
| mermaid.initialize({ |
| startOnLoad: true, |
| theme: 'default', |
| flowchart: { |
| useMaxWidth: false, |
| htmlLabels: true, |
| curve: 'linear', |
| nodeSpacing: 30, |
| rankSpacing: 40, |
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| fontSize: '14px', |
| primaryColor: '#ff6b6b', |
| lineColor: '#333333', |
| secondaryColor: '#feca57', |
| tertiaryColor: '#4ecdc4' |
| } |
| }); |
| |
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| for (let i = 1; i <= 8; i++) { |
| const slider = document.getElementById(`slider-${i}`); |
| if (slider) { |
| slider.addEventListener('input', function() { |
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