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title: biopython MCP Service
emoji: 🔧
colorFrom: blue
colorTo: indigo
sdk: docker
pinned: false
license: mit
---
# biopython MCP Service
This deployment package exposes core Biopython sequence-analysis capabilities as an MCP service using FastMCP.
## Available Tools
- `health_check`
- `parse_fasta_text`
- `translate_dna`
- `reverse_complement`
- `global_align`
- `compute_gc_fraction`
- `find_motif_positions`
## Local stdio (Claude Desktop / CLI)
```bash
cd biopython/mcp_output
MCP_TRANSPORT=stdio python start_mcp.py
```
You can also run the local stdio entry directly:
```bash
cd biopython/mcp_output/mcp_plugin
python main.py
```
## HTTP MCP (Docker / HF Spaces)
This deployment uses FastMCP HTTP transport, with endpoint exposed at `/mcp`.
Local run:
```bash
MCP_TRANSPORT=http MCP_PORT=7860 python biopython/mcp_output/start_mcp.py
```
Docker run:
```bash
./run_docker.sh
```
Then connect MCP clients to:
- `http://localhost:7860/mcp`
- `https://<your-space-host>/mcp`
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