app.py

"""Supplementary FastAPI app for local inspection (not MCP runtime entrypoint)."""

from __future__ import annotations

import os
import importlib
import sys
from pathlib import Path
from typing import Any

try:
    FastAPI = getattr(importlib.import_module("fastapi"), "FastAPI", None)
except Exception:
    FastAPI = None

PLUGIN_DIR = Path(__file__).resolve().parent / "biopython" / "mcp_output" / "mcp_plugin"
plugin_dir_str = str(PLUGIN_DIR)
if plugin_dir_str not in sys.path:
    sys.path.insert(0, plugin_dir_str)

if FastAPI is not None:
    app = FastAPI(title="biopython-mcp-info", version="1.0.0")
else:
    class _FallbackApp:
        def get(self, *_args: Any, **_kwargs: Any):
            def decorator(func):
                return func

            return decorator

    app = _FallbackApp()
PORT = int(os.getenv("PORT", "7860"))


def _extract_tools(app_obj: Any) -> list[dict[str, str]]:
    tools_attr = getattr(app_obj, "tools", None)
    if tools_attr is None:
        return []

    if isinstance(tools_attr, dict):
        items = tools_attr.values()
    else:
        items = tools_attr

    tools: list[dict[str, str]] = []
    for item in items:
        if isinstance(item, dict):
            name = str(item.get("name", ""))
            description = str(item.get("description", ""))
        else:
            name = str(getattr(item, "name", getattr(item, "__name__", "")))
            description = str(getattr(item, "description", ""))
        if name:
            tools.append({"name": name, "description": description})
    return tools


@app.get("/")
def root() -> dict[str, Any]:
    return {
        "service": "biopython-mcp-deployment",
        "mcp_transport": os.getenv("MCP_TRANSPORT", "stdio"),
        "mcp_port": os.getenv("MCP_PORT", "8000"),
        "info_port": PORT,
        "note": "This FastAPI app is supplementary and does not run the MCP server.",
    }


@app.get("/health")
def health() -> dict[str, str]:
    return {"status": "healthy"}


@app.get("/tools")
def tools() -> dict[str, Any]:
    try:
        create_app = getattr(importlib.import_module("mcp_service"), "create_app")

        mcp_app = create_app()
        return {"tools": _extract_tools(mcp_app)}
    except Exception as exc:
        return {"tools": [], "error": str(exc)}