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title: deepTools MCP Service
emoji: 🔧
colorFrom: blue
colorTo: indigo
sdk: docker
pinned: false
license: mit
---
# deepTools MCP Service
This deployment package exposes selected `deeptools` functionality through an MCP-compatible server built with `FastMCP`.
## Available Tools
- `health_check`
- `list_modules`
- `list_symbols`
- `call_function`
- `create_instance`
- `compute_ratio`
- `smart_label`
- `convert_colormap`
Detailed parameter docs and examples are available in `deepTools/mcp_output/README_MCP.md`.
## Local stdio usage
Use this mode for local MCP clients (for example Claude Desktop / CLI):
```bash
cd deepTools/mcp_output
python start_mcp.py
```
Or:
```bash
python mcp_plugin/main.py
```
## HTTP usage (Docker / hosted)
Run with HTTP transport:
```bash
cd deepTools/mcp_output
MCP_TRANSPORT=http MCP_PORT=7860 python start_mcp.py
```
Client connection endpoint:
`https://{host}/mcp`
## Docker deployment
Build and run:
```bash
./run_docker.sh
```
PowerShell:
```powershell
./run_docker.ps1
```
The Docker entry point is:
`python deepTools/mcp_output/start_mcp.py`
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