FROM python:3.11-slim

ENV PYTHONDONTWRITEBYTECODE=1
ENV PYTHONUNBUFFERED=1
ENV MCP_TRANSPORT=http
ENV MCP_PORT=7860

WORKDIR /app

COPY requirements.txt /app/requirements.txt
RUN pip install --no-cache-dir -r /app/requirements.txt

COPY scanpy /app/scanpy
COPY app.py /app/app.py

RUN chown -R appuser:appuser /app
USER appuser

EXPOSE 7860

CMD ["python", "scanpy/mcp_output/start_mcp.py"]