adding live submission, definitely wont work at first go
Browse files
app.py
CHANGED
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@@ -7,22 +7,62 @@ from gradio_leaderboard import Leaderboard
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from evaluation import evaluate_problem
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from utils import read_submission_from_hub, write_results
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from about import ASSAY_LIST, ASSAY_RENAME, ASSAY_EMOJIS
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raise gr.Error(f'Evaluation failed: {e}. No results written to results dataset.')
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def get_leaderboard_table(assay: str | None = None):
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# ds = load_dataset(results_repo, split='train', download_mode="force_redownload")
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@@ -37,7 +77,8 @@ def get_leaderboard_table(assay: str | None = None):
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# Previously hosted on HF hub, local for now (Can also pull directly from github backend)
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column_order = ["model", "property", "spearman", "spearman_abs"] # "assay",
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df["property"] = df["assay"].map(ASSAY_RENAME)
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df = df.query("assay.isin(@ASSAY_RENAME.keys())")
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if assay is not None:
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@@ -109,87 +150,50 @@ with gr.Blocks() as demo:
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"""
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# # gr.LoginButton()
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# with gr.Row():
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# with gr.Column():
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# problem_type = gr.Dropdown(PROBLEM_TYPES, label="Problem Type")
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# username_input = gr.Textbox(
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# label="Username",
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# placeholder="Enter your Hugging Face username",
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# info="This will be displayed on the leaderboard."
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# )
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# with gr.Column():
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# boundary_file = gr.File(label="Boundary JSON File (.json)")
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# username_input.change(
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# fn=lambda x: x if x.strip() else None,
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# inputs=username_input,
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# outputs=user_state
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# )
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# submit_btn = gr.Button("Evaluate")
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# message = gr.Textbox(label="Status", lines=1, visible=False)
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# # help message
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# gr.Markdown("If you have issues with submission or using the leaderboard, please start a discussion in the Community tab of this Space.")
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# submit_btn.click(
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# submit_boundary,
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# inputs=[problem_type, boundary_file, user_state],
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# outputs=[message, filename],
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# ).then(
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# fn=show_output_box,
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# inputs=[message],
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# outputs=[message],
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# ).then(
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# fn=evaluate_boundary,
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# inputs=[filename],
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# outputs=[eval_state]
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# )
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if __name__ == "__main__":
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from evaluation import evaluate_problem
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from utils import read_submission_from_hub, write_results
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from about import ASSAY_LIST, ASSAY_RENAME, ASSAY_EMOJIS, submissions_repo, API, results_repo
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from typing import BinaryIO, Literal
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from datetime import datetime
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import tempfile
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from datasets import load_dataset
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def make_submission(problem_type,
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submitted_file: BinaryIO,
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user_state):
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if user_state is None:
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raise gr.Error("You must submit your username to submit a file.")
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file_path = submitted_file.name
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if not file_path:
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raise gr.Error("Uploaded file object does not have a valid file path.")
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path_obj = Path(file_path)
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timestamp = datetime.utcnow().isoformat()
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with (
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path_obj.open("rb") as f_in,
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tempfile.NamedTemporaryFile(delete=False, suffix=".json") as tmp_boundary,
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):
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file_content = f_in.read()
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tmp_boundary.write(file_content)
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tmp_boundary_path = Path(tmp_boundary.name)
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# write to dataset
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filename = f"{problem_type}/{timestamp.replace(':', '-')}_{problem_type}.json"
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record = {
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"submission_filename": filename,
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"submission_time": timestamp,
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"problem_type": problem_type,
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"csv_content": file_content,
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"evaluated": False,
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"user": user_state,
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}
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with tempfile.NamedTemporaryFile(mode="w", suffix=".json", delete=False) as tmp:
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json.dump(record, tmp, indent=2)
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tmp.flush()
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tmp_name = tmp.name
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API.upload_file(
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path_or_fileobj=tmp_name,
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path_in_repo=filename,
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repo_id=submissions_repo,
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repo_type="dataset",
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commit_message=f"Add submission for {problem_type} at {timestamp}"
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)
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Path(tmp_name).unlink()
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tmp_boundary_path.unlink()
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return "✅ Your submission has been received! Sit tight and your scores will appear on the leaderboard shortly."
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def get_leaderboard_table(assay: str | None = None):
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# ds = load_dataset(results_repo, split='train', download_mode="force_redownload")
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# Previously hosted on HF hub, local for now (Can also pull directly from github backend)
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column_order = ["model", "property", "spearman", "spearman_abs"] # "assay",
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ds = load_dataset(results_repo, split='train', download_mode="force_redownload")
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df = pd.DataFrame(ds).drop_duplicates(subset=["model", "assay"])
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df["property"] = df["assay"].map(ASSAY_RENAME)
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df = df.query("assay.isin(@ASSAY_RENAME.keys())")
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if assay is not None:
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"""
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)
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with gr.TabItem("✉️ Submit", elem_id="boundary-benchmark-tab-table"):
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gr.Markdown(
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"""
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# Antibody Developability Submission
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Upload a CSV to get a score!
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"""
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)
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filename = gr.State(value=None)
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eval_state = gr.State(value=None)
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user_state = gr.State(value=None)
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# gr.LoginButton()
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with gr.Row():
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with gr.Column():
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problem_type = gr.Dropdown(ASSAY_LIST, label="Problem Type")
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username_input = gr.Textbox(
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label="Username",
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placeholder="Enter your Hugging Face username",
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info="This will be displayed on the leaderboard."
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)
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with gr.Column():
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boundary_file = gr.File(label="Boundary JSON File (.json)")
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username_input.change(
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fn=lambda x: x if x.strip() else None,
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inputs=username_input,
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outputs=user_state
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)
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submit_btn = gr.Button("Evaluate")
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message = gr.Textbox(label="Status", lines=1, visible=False)
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# help message
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gr.Markdown("If you have issues with submission or using the leaderboard, please start a discussion in the Community tab of this Space.")
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submit_btn.click(
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make_submission,
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inputs=[problem_type, boundary_file, user_state],
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outputs=[message, filename],
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).then(
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fn=show_output_box,
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inputs=[message],
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outputs=[message],
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)
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if __name__ == "__main__":
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