Spaces:
Sleeping
Sleeping
adding app file
Browse files
app.py
ADDED
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@@ -0,0 +1,273 @@
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| 1 |
+
import gradio as gr
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| 2 |
+
import pandas as pd
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| 3 |
+
from PIL import Image
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| 4 |
+
import os
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| 5 |
+
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| 6 |
+
# Define your sections and labels
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| 7 |
+
SECTION_LABELS = {
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| 8 |
+
"Oil Pore Related Issues": [
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| 9 |
+
"Very Large Pores (Not Red)",
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| 10 |
+
"Whiteheads (Clogged Pores)",
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| 11 |
+
"Blackheads (Clogged Pores)",
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| 12 |
+
"Shinny Skin",
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| 13 |
+
"Sebaceous Filaments (Sebum)"
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| 14 |
+
],
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| 15 |
+
"Acne and Blemishes": [
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| 16 |
+
"Pustules",
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| 17 |
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"Papules",
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| 18 |
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"Nodules",
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| 19 |
+
"Cysts",
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| 20 |
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"Acne",
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| 21 |
+
"Telangiectasia",
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| 22 |
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"Milia",
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| 23 |
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"Scars",
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| 24 |
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"Ice Berg Scars",
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| 25 |
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],
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| 26 |
+
"Redness and Irritation": [
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| 27 |
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"Redness",
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| 28 |
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"Irritation",
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| 29 |
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],
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| 30 |
+
"Dryness and Texture Issues": [
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| 31 |
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"Dryness",
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| 32 |
+
"Fine Lines / Wrinkles",
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| 33 |
+
"Skin Flakes"
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| 34 |
+
],
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| 35 |
+
"Aging and Elasticity Issues": [
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| 36 |
+
"Loose Skin",
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| 37 |
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"Deep Wrinkles"
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| 38 |
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],
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| 39 |
+
"Pigmentation Issues": [
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| 40 |
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"Dark Spots",
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| 41 |
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"Melasma",
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| 42 |
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"Freckles"
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| 43 |
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],
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| 44 |
+
"Rosacea": [
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| 45 |
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"Erythematous Telangiectasia Rosacea",
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| 46 |
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"Papillopustular Rosacea",
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| 47 |
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"Fimatoz Rosacea",
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| 48 |
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"Ocular Rosacea"
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| 49 |
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],
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| 50 |
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"Eczema": [
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| 51 |
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"Seboreik Dermatit"
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| 52 |
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]
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| 53 |
+
}
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| 54 |
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| 55 |
+
# Define the sections for each column to control UI layout
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| 56 |
+
column1_sections = ["Oil Pore Related Issues", "Dryness and Texture Issues"]
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| 57 |
+
column2_sections = ["Acne and Blemishes"]
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| 58 |
+
column3_sections = ["Redness and Irritation", "Pigmentation Issues", "Aging and Elasticity Issues"]
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| 59 |
+
column4_sections = ["Rosacea", "Egzama"]
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| 60 |
+
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| 61 |
+
# Combine all section lists to define the exact UI order
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| 62 |
+
UI_ORDERED_SECTIONS = column1_sections + column2_sections + column3_sections + column4_sections
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| 63 |
+
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| 64 |
+
# Flattened labels list, created in the SAME order as the UI checkboxes will be. This is the fix.
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| 65 |
+
ALL_LABELS = [
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| 66 |
+
label
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| 67 |
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for section_name in UI_ORDERED_SECTIONS
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| 68 |
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for label in SECTION_LABELS.get(section_name, [])
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| 69 |
+
]
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| 70 |
+
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| 71 |
+
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| 72 |
+
# Global state
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| 73 |
+
images = []
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| 74 |
+
current_index = 0
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| 75 |
+
results = []
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| 76 |
+
annotations = {}
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| 77 |
+
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| 78 |
+
# Core functions
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| 79 |
+
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| 80 |
+
def display_image(idx):
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| 81 |
+
"""Displays the image at the given index and its saved annotations."""
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| 82 |
+
if images:
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| 83 |
+
img_path = images[idx]
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| 84 |
+
img = Image.open(img_path)
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| 85 |
+
fname = os.path.basename(img_path)
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| 86 |
+
tick = ' ✅' if idx in annotations else ''
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| 87 |
+
caption = f"{fname} ({idx+1}/{len(images)}){tick}"
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| 88 |
+
states = annotations.get(idx, [False] * len(ALL_LABELS))
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| 89 |
+
return [img, caption] + states
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| 90 |
+
return [None, "No images uploaded"] + [False] * len(ALL_LABELS)
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| 91 |
+
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| 92 |
+
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| 93 |
+
def navigate(delta):
|
| 94 |
+
"""Navigates to the next or previous image."""
|
| 95 |
+
global current_index
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| 96 |
+
if not images:
|
| 97 |
+
return [None, "No images uploaded"] + [False] * len(ALL_LABELS)
|
| 98 |
+
current_index = (current_index + delta + len(images)) % len(images)
|
| 99 |
+
return display_image(current_index)
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| 100 |
+
|
| 101 |
+
|
| 102 |
+
def submit(*selections):
|
| 103 |
+
"""Saves the current annotations to the state and writes to a CSV file."""
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| 104 |
+
if not images:
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| 105 |
+
return "No image to label", None
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| 106 |
+
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| 107 |
+
# Save selections to our annotations dictionary
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| 108 |
+
annotations[current_index] = list(selections)
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| 109 |
+
fname = os.path.basename(images[current_index])
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| 110 |
+
chosen_labels = [lbl for lbl, sel in zip(ALL_LABELS, selections) if sel]
|
| 111 |
+
|
| 112 |
+
global results
|
| 113 |
+
# Remove any previous entry for this image to avoid duplicates
|
| 114 |
+
results = [r for r in results if r['image'] != fname]
|
| 115 |
+
results.append({'image': fname, 'labels': ', '.join(chosen_labels)})
|
| 116 |
+
|
| 117 |
+
# Write the updated results to a CSV file
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| 118 |
+
df = pd.DataFrame(results)
|
| 119 |
+
df.to_csv('image_labels.csv', index=False)
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| 120 |
+
|
| 121 |
+
return "Labels saved!", 'image_labels.csv'
|
| 122 |
+
|
| 123 |
+
|
| 124 |
+
def upload_images(files):
|
| 125 |
+
"""Handles image uploads, resetting the application state."""
|
| 126 |
+
global images, current_index, results, annotations
|
| 127 |
+
images = [f.name for f in files]
|
| 128 |
+
current_index = 0
|
| 129 |
+
results = []
|
| 130 |
+
annotations = {}
|
| 131 |
+
outputs = display_image(0)
|
| 132 |
+
# Hide the uploader component after a successful upload
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| 133 |
+
return outputs + [gr.update(visible=False), gr.update(visible=True)]
|
| 134 |
+
|
| 135 |
+
def load_annotations(csv_file):
|
| 136 |
+
"""Loads annotations from an uploaded CSV file."""
|
| 137 |
+
global annotations, results
|
| 138 |
+
if csv_file is None or not images:
|
| 139 |
+
# If no CSV is uploaded or no images are loaded, do nothing.
|
| 140 |
+
return display_image(current_index)
|
| 141 |
+
|
| 142 |
+
try:
|
| 143 |
+
df = pd.read_csv(csv_file.name)
|
| 144 |
+
# Create a quick lookup map from filename to its index in the `images` list
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| 145 |
+
image_map = {os.path.basename(name): i for i, name in enumerate(images)}
|
| 146 |
+
|
| 147 |
+
# Reset existing annotations and results
|
| 148 |
+
annotations = {}
|
| 149 |
+
results = df.to_dict('records')
|
| 150 |
+
|
| 151 |
+
for _, row in df.iterrows():
|
| 152 |
+
fname = row['image']
|
| 153 |
+
# Check if the image from the CSV is in the currently uploaded images
|
| 154 |
+
if fname in image_map:
|
| 155 |
+
img_idx = image_map[fname]
|
| 156 |
+
# Handle cases where labels might be empty (NaN)
|
| 157 |
+
if pd.notna(row['labels']):
|
| 158 |
+
saved_labels = set(l.strip() for l in row['labels'].split(','))
|
| 159 |
+
else:
|
| 160 |
+
saved_labels = set()
|
| 161 |
+
|
| 162 |
+
# Create the boolean state list for the checkboxes
|
| 163 |
+
states = [label in saved_labels for label in ALL_LABELS]
|
| 164 |
+
annotations[img_idx] = states
|
| 165 |
+
except Exception as e:
|
| 166 |
+
print(f"Error loading annotations: {e}")
|
| 167 |
+
# In case of error, just refresh the current view without changes
|
| 168 |
+
return display_image(current_index)
|
| 169 |
+
|
| 170 |
+
# After loading, refresh the view to show the annotations for the current image
|
| 171 |
+
return display_image(current_index)
|
| 172 |
+
|
| 173 |
+
|
| 174 |
+
# --- Gradio UI Definition ---
|
| 175 |
+
with gr.Blocks(theme=gr.themes.Soft()) as demo:
|
| 176 |
+
gr.Markdown("## Dermatology Annotation Tool")
|
| 177 |
+
with gr.Row():
|
| 178 |
+
image_upload = gr.File(label="1. Upload Images", file_count="multiple", file_types=["image"])
|
| 179 |
+
csv_upload = gr.File(label="2. (Optional) Upload Annotations CSV", file_types=[".csv"], visible=False)
|
| 180 |
+
|
| 181 |
+
checkbox_components = []
|
| 182 |
+
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| 183 |
+
with gr.Row(): # Main row for the four columns of labels
|
| 184 |
+
# Column 1
|
| 185 |
+
with gr.Column(scale=1, min_width=0):
|
| 186 |
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for section_name in column1_sections:
|
| 187 |
+
if section_name in SECTION_LABELS:
|
| 188 |
+
with gr.Group():
|
| 189 |
+
gr.Markdown(f"### {section_name}")
|
| 190 |
+
for lbl in SECTION_LABELS[section_name]:
|
| 191 |
+
cb = gr.Checkbox(label=lbl)
|
| 192 |
+
checkbox_components.append(cb)
|
| 193 |
+
|
| 194 |
+
# Column 2
|
| 195 |
+
with gr.Column(scale=1, min_width=0):
|
| 196 |
+
for section_name in column2_sections:
|
| 197 |
+
if section_name in SECTION_LABELS:
|
| 198 |
+
with gr.Group():
|
| 199 |
+
gr.Markdown(f"### {section_name}")
|
| 200 |
+
for lbl in SECTION_LABELS[section_name]:
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| 201 |
+
cb = gr.Checkbox(label=lbl)
|
| 202 |
+
checkbox_components.append(cb)
|
| 203 |
+
|
| 204 |
+
# Column 3
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| 205 |
+
with gr.Column(scale=1, min_width=0):
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| 206 |
+
for section_name in column3_sections:
|
| 207 |
+
if section_name in SECTION_LABELS:
|
| 208 |
+
with gr.Group():
|
| 209 |
+
gr.Markdown(f"### {section_name}")
|
| 210 |
+
for lbl in SECTION_LABELS[section_name]:
|
| 211 |
+
cb = gr.Checkbox(label=lbl)
|
| 212 |
+
checkbox_components.append(cb)
|
| 213 |
+
|
| 214 |
+
# Column 4
|
| 215 |
+
with gr.Column(scale=1, min_width=0):
|
| 216 |
+
for section_name in column4_sections:
|
| 217 |
+
if section_name in SECTION_LABELS:
|
| 218 |
+
with gr.Group():
|
| 219 |
+
gr.Markdown(f"### {section_name}")
|
| 220 |
+
for lbl in SECTION_LABELS[section_name]:
|
| 221 |
+
cb = gr.Checkbox(label=lbl)
|
| 222 |
+
checkbox_components.append(cb)
|
| 223 |
+
|
| 224 |
+
# Image display and controls
|
| 225 |
+
with gr.Row():
|
| 226 |
+
with gr.Column(scale=2): # Image display column
|
| 227 |
+
img = gr.Image(label="Image")
|
| 228 |
+
caption = gr.Label(value="No images uploaded")
|
| 229 |
+
with gr.Row():
|
| 230 |
+
prev_btn = gr.Button("⬅️ Previous")
|
| 231 |
+
next_btn = gr.Button("Next ➡️")
|
| 232 |
+
with gr.Column(scale=1): # Controls and download column
|
| 233 |
+
submit_btn = gr.Button("Submit Labels")
|
| 234 |
+
status = gr.Label()
|
| 235 |
+
csv_downloader = gr.File(label="Download labels CSV")
|
| 236 |
+
|
| 237 |
+
# --- Event Handling ---
|
| 238 |
+
|
| 239 |
+
# When images are uploaded
|
| 240 |
+
image_upload.upload(
|
| 241 |
+
fn=upload_images,
|
| 242 |
+
inputs=image_upload,
|
| 243 |
+
outputs=[img, caption] + checkbox_components + [image_upload, csv_upload]
|
| 244 |
+
)
|
| 245 |
+
|
| 246 |
+
# When a CSV annotation file is uploaded
|
| 247 |
+
csv_upload.upload(
|
| 248 |
+
fn=load_annotations,
|
| 249 |
+
inputs=csv_upload,
|
| 250 |
+
outputs=[img, caption] + checkbox_components
|
| 251 |
+
)
|
| 252 |
+
|
| 253 |
+
# When previous button is clicked
|
| 254 |
+
prev_btn.click(
|
| 255 |
+
fn=lambda: navigate(-1),
|
| 256 |
+
outputs=[img, caption] + checkbox_components
|
| 257 |
+
)
|
| 258 |
+
|
| 259 |
+
# When next button is clicked
|
| 260 |
+
next_btn.click(
|
| 261 |
+
fn=lambda: navigate(1),
|
| 262 |
+
outputs=[img, caption] + checkbox_components
|
| 263 |
+
)
|
| 264 |
+
|
| 265 |
+
# When submit button is clicked
|
| 266 |
+
submit_btn.click(
|
| 267 |
+
fn=submit,
|
| 268 |
+
inputs=checkbox_components,
|
| 269 |
+
outputs=[status, csv_downloader]
|
| 270 |
+
)
|
| 271 |
+
|
| 272 |
+
if __name__ == "__main__":
|
| 273 |
+
demo.launch(server_name="0.0.0.0", server_port=7860)
|