Update app.py
Browse files
app.py
CHANGED
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@@ -38,44 +38,40 @@ def generate_advice(extracted_data):
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for item in extracted_data:
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query = f"{item['Component']} {item['Status']}"
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print(f"Query: {query}") # Debugging step
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# Generate query embedding
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query_embedding = embedding_model.encode([query])
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query_embedding = np.array(query_embedding, dtype="float32").reshape(1, -1)
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# Validate embedding shape
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if query_embedding.shape[1] != index.d:
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raise ValueError(f"Embedding dimension mismatch: FAISS expects {index.d}, but got {query_embedding.shape[1]}")
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# Search FAISS for the closest match
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_, idx = index.search(query_embedding, 1)
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best_match = kb[idx[0][0]]
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# LLM prompt
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role = "Medical expert providing advice based on lab results."
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prompt = f"""
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Lab Test: {item['Component']}
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Value: {item['Value']} {item['Units']}
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Status: {item['Status']}
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Medical Guidelines: {best_match['Advice']}
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Provide additional insights or recommendations.
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"""
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# Generate advice
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message = [
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{"role": "system", "content": role},
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{"role": "user", "content": prompt},
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]
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input_text = tokenizer.apply_chat_template(
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message, tokenize=
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)
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output = llm.generate(
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input_ids=input_text,
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max_length=150,
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num_return_sequences=1
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)
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@@ -86,8 +82,10 @@ def generate_advice(extracted_data):
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return recommendations
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except Exception as e:
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return [{"error": f"Exception occurred: {str(e)}"}]
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# Extract structured data from the PDF
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def pdf_to_text(pdf_file):
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try:
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for item in extracted_data:
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query = f"{item['Component']} {item['Status']}"
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print(f"Processing Query: {query}") # Debugging step
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# Generate query embedding as float32
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query_embedding = embedding_model.encode([query])
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query_embedding = np.array(query_embedding, dtype="float32").reshape(1, -1)
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# Search FAISS for the closest match
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_, idx = index.search(query_embedding, 1)
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best_match = kb[idx[0][0]]
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# Prepare LLM prompt
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role = "Medical expert providing advice based on lab results."
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prompt = f"""
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Lab Test: {item['Component']}
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Value: {item['Value']} {item['Units']}
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Status: {item['Status']}
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Medical Guidelines: {best_match['Advice']}
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Provide additional insights or recommendations.
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"""
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# Generate advice with LLaMA
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message = [
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{"role": "system", "content": role},
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{"role": "user", "content": prompt},
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]
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input_text = tokenizer.apply_chat_template(
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message, tokenize=True, add_generation_prompt=True, return_tensors="pt"
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)
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output = llm.generate(
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input_ids=input_text["input_ids"],
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max_length=150,
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num_return_sequences=1
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)
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return recommendations
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except Exception as e:
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print(f"Error: {e}") # Debugging any unexpected issues
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return [{"error": f"Exception occurred: {str(e)}"}]
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# Extract structured data from the PDF
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def pdf_to_text(pdf_file):
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try:
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