Update Dockerfile

Dockerfile

@@ -1,5 +1,11 @@
 FROM python:3.10
 
+# Install build dependencies for Cython extensions
+RUN apt-get update && apt-get install -y \
+    build-essential \
+    g++ \
+    && rm -rf /var/lib/apt/lists/*
+
 RUN useradd -m -u 1000 user && python -m pip install --upgrade pip
 USER user
 ENV PATH="/home/user/.local/bin:$PATH"
@@ -10,6 +16,13 @@ COPY --chown=user ./requirements.txt requirements.txt
 RUN pip install --no-cache-dir --upgrade -r requirements.txt
 
 COPY --chown=user . /app
+
+# Install autodE from source (includes Cython compilation)
+WORKDIR /app/autodE/source
+RUN pip install --no-cache-dir -e .
+
+WORKDIR /app
+
 ENV MCP_TRANSPORT=http
 ENV MCP_PORT=7860