Update Dockerfile

Dockerfile

@@ -1,6 +1,16 @@
-FROM python:3.10-slim
+FROM python:3.10
+
+# 安装系统依赖
+RUN apt-get update && apt-get install -y \
+    gfortran \
+    libopenmpi-dev \
+    openmpi-bin \
+    libopenblas-dev \
+    liblapack-dev \
+    pkg-config \
+    git \
+    && rm -rf /var/lib/apt/lists/*
 
-# 创建用户
 RUN useradd -m -u 1000 user && \
     python -m pip install --upgrade pip
 
@@ -8,29 +18,25 @@ USER user
 ENV PATH="/home/user/.local/bin:$PATH"
 WORKDIR /app
 
-# 复制 requirements.txt 并安装基础依赖
-COPY --chown=user ./requirements.txt /app/requirements.txt
-RUN pip install --no-cache-dir numpy fastmcp || true
-
-# 尝试从 PyPI 安装 pyPDAF（如果可用）
-# 如果失败，服务仍可启动，但会在调用时报错
-RUN pip install --no-cache-dir pyPDAF || echo "pyPDAF not available from PyPI, using mock mode"
+# 克隆完整的仓库（包含 submodule）
+RUN git clone --recursive https://github.com/yumengch/pyPDAF.git pyPDAF_repo
 
-# 安装其他应用依赖
-RUN pip install --no-cache-dir -r requirements.txt || true
+# 安装 pyPDAF
+WORKDIR /app/pyPDAF_repo
+RUN pip install --no-cache-dir meson-python meson ninja cython numpy mpi4py && \
+    pip install --no-cache-dir -v .
 
-# 复制 MCP 服务代码
+# 回到应用目录
+WORKDIR /app
 COPY --chown=user ./pyPDAF/mcp_output /app/pyPDAF/mcp_output
+COPY --chown=user ./requirements.txt /app/requirements.txt
 
-# 复制 pyPDAF 源码（备用，供参考）
-COPY --chown=user ./pyPDAF/source /app/pyPDAF/source
+RUN pip install --no-cache-dir --upgrade -r requirements.txt
 
-# 设置环境变量
 ENV PYTHONPATH=/app:$PYTHONPATH
 ENV MCP_TRANSPORT=http
 ENV MCP_PORT=7860
 
 EXPOSE 7860
 
-# 启动 MCP 服务
-CMD ["python", "-u", "pyPDAF/mcp_output/start_mcp.py"]
+CMD ["python", "pyPDAF/mcp_output/start_mcp.py"]