Spaces:
Sleeping
Sleeping
Habeeb Okunade
commited on
Commit
·
0e0e505
1
Parent(s):
cb24c7c
Update Training script
Browse files
app.py
CHANGED
|
@@ -1,6 +1,6 @@
|
|
| 1 |
# app.py
|
| 2 |
-
import os, json
|
| 3 |
-
from fastapi import FastAPI, UploadFile
|
| 4 |
from transformers import AutoImageProcessor, BeitForImageClassification
|
| 5 |
from PIL import Image
|
| 6 |
import torch
|
|
@@ -28,6 +28,21 @@ def load_model():
|
|
| 28 |
processor, model = None, None
|
| 29 |
print(f"⚠️ Skipping model load: {e}")
|
| 30 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 31 |
@app.on_event("startup")
|
| 32 |
def startup_event():
|
| 33 |
if os.path.exists(MODEL_DIR):
|
|
@@ -54,7 +69,7 @@ async def predict(file: UploadFile):
|
|
| 54 |
}
|
| 55 |
|
| 56 |
@app.post("/train")
|
| 57 |
-
async def train_endpoint():
|
| 58 |
-
|
| 59 |
-
|
| 60 |
-
return {"status": "Training
|
|
|
|
| 1 |
# app.py
|
| 2 |
+
import os, json, subprocess
|
| 3 |
+
from fastapi import BackgroundTasks, FastAPI, UploadFile
|
| 4 |
from transformers import AutoImageProcessor, BeitForImageClassification
|
| 5 |
from PIL import Image
|
| 6 |
import torch
|
|
|
|
| 28 |
processor, model = None, None
|
| 29 |
print(f"⚠️ Skipping model load: {e}")
|
| 30 |
|
| 31 |
+
def run_training():
|
| 32 |
+
try:
|
| 33 |
+
result = subprocess.run(
|
| 34 |
+
["python", "train2.py"],
|
| 35 |
+
capture_output=True,
|
| 36 |
+
text=True
|
| 37 |
+
)
|
| 38 |
+
if result.returncode == 0 and os.path.exists(MODEL_DIR):
|
| 39 |
+
load_model()
|
| 40 |
+
print("✅ Training complete and model reloaded")
|
| 41 |
+
else:
|
| 42 |
+
print("❌ Training failed:", result.stderr)
|
| 43 |
+
except Exception as e:
|
| 44 |
+
print("⚠️ Training exception:", str(e))
|
| 45 |
+
|
| 46 |
@app.on_event("startup")
|
| 47 |
def startup_event():
|
| 48 |
if os.path.exists(MODEL_DIR):
|
|
|
|
| 69 |
}
|
| 70 |
|
| 71 |
@app.post("/train")
|
| 72 |
+
async def train_endpoint(background_tasks: BackgroundTasks):
|
| 73 |
+
# Schedule the training in the background
|
| 74 |
+
background_tasks.add_task(run_training)
|
| 75 |
+
return {"status": "Training started in background"}
|
train2.py
ADDED
|
@@ -0,0 +1,110 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import os
|
| 2 |
+
import json
|
| 3 |
+
import torch
|
| 4 |
+
from datasets import load_dataset
|
| 5 |
+
from transformers import (
|
| 6 |
+
AutoImageProcessor,
|
| 7 |
+
BeitForImageClassification,
|
| 8 |
+
TrainingArguments,
|
| 9 |
+
Trainer
|
| 10 |
+
)
|
| 11 |
+
from sklearn.metrics import accuracy_score, f1_score, precision_score, recall_score
|
| 12 |
+
|
| 13 |
+
# ----------------------------
|
| 14 |
+
# CONFIG
|
| 15 |
+
# ----------------------------
|
| 16 |
+
MODEL_NAME = "microsoft/beit-base-patch16-224"
|
| 17 |
+
OUTPUT_DIR = os.environ.get("OUTPUT_DIR", os.path.expanduser("~/outputs/beit-retina"))
|
| 18 |
+
NUM_CLASSES = 6 # retina disease classes
|
| 19 |
+
|
| 20 |
+
# Make sure output directory exists
|
| 21 |
+
os.makedirs(OUTPUT_DIR, exist_ok=True)
|
| 22 |
+
|
| 23 |
+
# ----------------------------
|
| 24 |
+
# LOAD DATASET
|
| 25 |
+
# ----------------------------
|
| 26 |
+
# Example: Replace this with your retina dataset
|
| 27 |
+
# You can load a Hugging Face dataset or your own image folder dataset
|
| 28 |
+
# Dataset format: train/valid/test folders each containing subfolders by class name
|
| 29 |
+
dataset = load_dataset("imagefolder", data_dir="data")
|
| 30 |
+
|
| 31 |
+
# ----------------------------
|
| 32 |
+
# PREPROCESSOR
|
| 33 |
+
# ----------------------------
|
| 34 |
+
processor = AutoImageProcessor.from_pretrained(MODEL_NAME)
|
| 35 |
+
|
| 36 |
+
def transform(example):
|
| 37 |
+
inputs = processor(example["image"], return_tensors="pt")
|
| 38 |
+
inputs["label"] = example["label"]
|
| 39 |
+
return inputs
|
| 40 |
+
|
| 41 |
+
# Map preprocessing
|
| 42 |
+
dataset = dataset.with_transform(transform)
|
| 43 |
+
|
| 44 |
+
# ----------------------------
|
| 45 |
+
# MODEL
|
| 46 |
+
# ----------------------------
|
| 47 |
+
model = BeitForImageClassification.from_pretrained(
|
| 48 |
+
MODEL_NAME,
|
| 49 |
+
num_labels=NUM_CLASSES,
|
| 50 |
+
ignore_mismatched_sizes=True
|
| 51 |
+
)
|
| 52 |
+
|
| 53 |
+
# ----------------------------
|
| 54 |
+
# METRICS
|
| 55 |
+
# ----------------------------
|
| 56 |
+
def compute_metrics(eval_pred):
|
| 57 |
+
logits, labels = eval_pred
|
| 58 |
+
preds = logits.argmax(axis=-1)
|
| 59 |
+
return {
|
| 60 |
+
"accuracy": accuracy_score(labels, preds),
|
| 61 |
+
"precision": precision_score(labels, preds, average="macro"),
|
| 62 |
+
"recall": recall_score(labels, preds, average="macro"),
|
| 63 |
+
"f1": f1_score(labels, preds, average="macro"),
|
| 64 |
+
}
|
| 65 |
+
|
| 66 |
+
# ----------------------------
|
| 67 |
+
# TRAINING ARGS
|
| 68 |
+
# ----------------------------
|
| 69 |
+
args = TrainingArguments(
|
| 70 |
+
output_dir=OUTPUT_DIR,
|
| 71 |
+
evaluation_strategy="epoch",
|
| 72 |
+
save_strategy="epoch",
|
| 73 |
+
learning_rate=5e-5,
|
| 74 |
+
per_device_train_batch_size=16,
|
| 75 |
+
per_device_eval_batch_size=16,
|
| 76 |
+
num_train_epochs=5,
|
| 77 |
+
weight_decay=0.01,
|
| 78 |
+
logging_dir=os.path.join(OUTPUT_DIR, "logs"),
|
| 79 |
+
push_to_hub=False
|
| 80 |
+
)
|
| 81 |
+
|
| 82 |
+
# ----------------------------
|
| 83 |
+
# TRAINER
|
| 84 |
+
# ----------------------------
|
| 85 |
+
trainer = Trainer(
|
| 86 |
+
model=model,
|
| 87 |
+
args=args,
|
| 88 |
+
train_dataset=dataset["train"],
|
| 89 |
+
eval_dataset=dataset["validation"],
|
| 90 |
+
tokenizer=processor,
|
| 91 |
+
compute_metrics=compute_metrics
|
| 92 |
+
)
|
| 93 |
+
|
| 94 |
+
# ----------------------------
|
| 95 |
+
# TRAIN
|
| 96 |
+
# ----------------------------
|
| 97 |
+
trainer.train()
|
| 98 |
+
|
| 99 |
+
# ----------------------------
|
| 100 |
+
# SAVE FINAL MODEL + LABELS
|
| 101 |
+
# ----------------------------
|
| 102 |
+
trainer.save_model(OUTPUT_DIR)
|
| 103 |
+
processor.save_pretrained(OUTPUT_DIR)
|
| 104 |
+
|
| 105 |
+
# Save class labels mapping
|
| 106 |
+
labels = dataset["train"].features["label"].names
|
| 107 |
+
with open(os.path.join(OUTPUT_DIR, "labels.json"), "w") as f:
|
| 108 |
+
json.dump(labels, f)
|
| 109 |
+
|
| 110 |
+
print(f"✅ Model and processor saved to {OUTPUT_DIR}")
|