Retina_Training / api.py
Habeeb Okunade
Updating model
aa253e2
from __future__ import annotations
import io
import os
from threading import Thread
from typing import Optional
from fastapi import FastAPI, UploadFile, File, Form
from fastapi.responses import JSONResponse
from PIL import Image
import torch
from torchvision import transforms
from huggingface_hub import HfApi, create_repo, upload_file
from train import fit
from model_loader import build_classifier
from dataset import NORM_MEAN, NORM_STD
from utils import unzip_dataset, clean_dir
app = FastAPI(title="RETFound MAE – Train & Inference API")
# ---------- Config (safe paths for HF Spaces) ----------
DATA_ROOT = os.getenv("DATA_ROOT", "/tmp/data")
CKPT_DIR = os.getenv("CKPT_DIR", "/tmp/checkpoints")
BASE_REPO = os.getenv("HF_BASE_MODEL_REPO", "YukunZhou/RETFound_mae_meh")
BASE_FILE = os.getenv("HF_BASE_MODEL_FILE", "RETFound_mae_meh.pth")
MODEL_PUSH_REPO = os.getenv("HF_PUSH_REPO", "habeebCycle/RETFound_mae_meh_1")
DEVICE = "cuda" if torch.cuda.is_available() else "cpu"
# Runtime state
_state = {
"training": False,
"best_ckpt": None,
"classes": None,
"val_acc": None,
}
_model = None
_transform = transforms.Compose([
transforms.Resize((224, 224)),
transforms.ToTensor(),
transforms.Normalize(mean=NORM_MEAN, std=NORM_STD)
])
def _load_model_for_inference():
global _model
if _state["best_ckpt"] and os.path.exists(_state["best_ckpt"]):
ckpt = torch.load(_state["best_ckpt"], map_location=DEVICE)
classes = ckpt.get("classes", [])
_state["classes"] = classes
model = build_classifier(num_classes=len(classes), base_repo=BASE_REPO, base_filename=BASE_FILE, device=DEVICE)
model.load_state_dict(ckpt["model"], strict=False)
else:
model = build_classifier(num_classes=2, base_repo=BASE_REPO, base_filename=BASE_FILE, device=DEVICE)
model.eval()
_model = model
@app.get("/status")
def status():
return {
"training": _state["training"],
"best_ckpt": _state["best_ckpt"],
"classes": _state["classes"],
"val_acc": _state["val_acc"],
"device": DEVICE,
}
@app.post("/upload_dataset")
async def upload_dataset(file: UploadFile = File(...)):
"""Upload a ZIP that contains train/ and val/ folders."""
os.makedirs("/tmp/uploads", exist_ok=True)
zip_path = f"/tmp/uploads/{file.filename}"
with open(zip_path, "wb") as f:
f.write(await file.read())
clean_dir(DATA_ROOT) # Now points to /tmp/data
extracted = unzip_dataset(zip_path, DATA_ROOT)
return {"ok": True, "dataset_dir": extracted}
@app.post("/train")
async def start_train(epochs: int = Form(10), batch_size: int = Form(16), lr: float = Form(5e-4), freeze_backbone: bool = Form(True)):
if _state["training"]:
return JSONResponse({"error": "Training already in progress"}, status_code=409)
def _run():
try:
_state["training"] = True
ckpt_path, classes, best_acc = fit(
data_root=DATA_ROOT,
base_repo=BASE_REPO,
base_filename=BASE_FILE,
epochs=int(epochs),
batch_size=int(batch_size),
lr=float(lr),
freeze_backbone=bool(freeze_backbone),
out_dir=CKPT_DIR,
device=DEVICE,
)
_state.update({
"best_ckpt": ckpt_path,
"classes": classes,
"val_acc": best_acc,
})
_load_model_for_inference()
finally:
_state["training"] = False
Thread(target=_run, daemon=True).start()
return {"ok": True, "message": "Training started", "params": {"epochs": epochs, "batch_size": batch_size, "lr": lr, "freeze_backbone": freeze_backbone}}
@app.post("/predict")
async def predict(file: UploadFile = File(...)):
global _model
if _model is None:
_load_model_for_inference()
if _state["classes"] is None:
return JSONResponse({"error": "Model not trained yet. Upload dataset and call /train first."}, status_code=400)
contents = await file.read()
image = Image.open(io.BytesIO(contents)).convert("RGB")
x = _transform(image).unsqueeze(0).to(DEVICE)
with torch.no_grad():
logits = _model(x)
probs = torch.softmax(logits, dim=1)[0].cpu().tolist()
idx = int(torch.argmax(torch.tensor(probs)).item())
return {
"prediction": _state["classes"][idx],
"probabilities": {cls: float(probs[i]) for i, cls in enumerate(_state["classes"])},
}
@app.post("/push")
async def push_to_hub(repo_id: Optional[str] = Form(None)):
"""Push best checkpoint + metadata to Hugging Face Hub."""
repo_id = repo_id or MODEL_PUSH_REPO
if not repo_id:
return JSONResponse({"error": "Set HF_PUSH_REPO env var or pass repo_id."}, status_code=400)
if not _state["best_ckpt"] or not os.path.exists(_state["best_ckpt"]):
return JSONResponse({"error": "No trained checkpoint to push."}, status_code=400)
api = HfApi()
create_repo(repo_id=repo_id, repo_type="model", exist_ok=True)
upload_file(path_or_fileobj=_state["best_ckpt"], path_in_repo="retfound_classifier_best.pth", repo_id=repo_id, repo_type="model")
card = f"""# RETFound MAE – Retinal Classifier (Fine-tuned)
- Base: `{BASE_REPO}/{BASE_FILE}`
- Classes: `{_state['classes']}`
- Best val acc: `{_state['val_acc']}`
## Inference
This repo contains a PyTorch checkpoint `retfound_classifier_best.pth` compatible with RETFound MAE backbone.
"""
card_path = "/tmp/MODEL_CARD.md"
with open(card_path, "w") as f:
f.write(card)
upload_file(path_or_fileobj=card_path, path_in_repo="README.md", repo_id=repo_id, repo_type="model")
return {"ok": True, "pushed_to": repo_id}