TabTransformer / app.py
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with open("app.py", "w") as f:
f.write("""
import os
import torch
import torch.nn as nn
import gradio as gr
import pickle
import pandas as pd
print("Starting application...")
print("Current directory:", os.getcwd())
print("Files in directory:", os.listdir())
class TabTransformer(nn.Module):
def __init__(self, input_dim, num_classes=2, d_model=64, nhead=4, num_layers=3, dropout=0.1):
super().__init__()
self.embedding = nn.Linear(input_dim, d_model)
encoder_layer = nn.TransformerEncoderLayer(
d_model=d_model, nhead=nhead, dim_feedforward=d_model * 4, dropout=dropout, activation='gelu'
)
self.transformer_encoder = nn.TransformerEncoder(encoder_layer, num_layers=num_layers)
self.fc = nn.Sequential(
nn.Linear(d_model, d_model // 2),
nn.ReLU(),
nn.Dropout(dropout),
nn.Linear(d_model // 2, num_classes)
)
def forward(self, x):
x = self.embedding(x)
x = x.unsqueeze(0)
x = self.transformer_encoder(x)
x = x.squeeze(0)
return self.fc(x)
def predict(*inputs):
try:
print("Prediction started...")
# Feature lists
categorical_features = ['Multifocal_PVC', 'Nonsustained_VT', 'gender', 'HTN', 'DM', 'Fullcompansasion']
numeric_features = ['pvc_percent', 'PVCQRS', 'EF', 'Age', 'PVC_Prematurity_index', 'QRS_ratio',
'mean_HR', 'symptom_duration', 'QTc_sinus', 'PVCCI_dispersion',
'CI_variability', 'PVC_Peak_QRS_duration', 'PVCCI', 'PVC_Compansatory_interval']
# Split inputs
cat_inputs = inputs[:len(categorical_features)]
num_inputs = inputs[len(categorical_features):]
# Convert inputs
cat_data = [1 if val == "Yes" else 0 for val in cat_inputs]
num_data = [float(val) for val in num_inputs]
# Create DataFrame
data = pd.DataFrame([cat_data + num_data], columns=categorical_features + numeric_features)
print("Data prepared:", data.shape)
# Load scaler and transform data
with open("trans_scaler.pkl", 'rb') as f:
scaler = pickle.load(f)
scaled_data = scaler.transform(data)
print("Data scaled")
# Load model and predict
input_dim = len(categorical_features) + len(numeric_features)
model = TabTransformer(input_dim=input_dim)
model.load_state_dict(torch.load("tabtransformer_model.pth", map_location='cpu'))
model.eval()
with torch.no_grad():
tensor_data = torch.FloatTensor(scaled_data)
output = model(tensor_data)
probabilities = torch.softmax(output, dim=1)
print("Prediction completed")
return {
"Response Probability": float(probabilities[0][0]),
"Non-Response Probability": float(probabilities[0][1])
}
except Exception as e:
print(f"Error in prediction: {str(e)}")
return {"error": str(e)}
# Default values
numeric_defaults = {
'pvc_percent': 11.96, 'PVCQRS': 155.1, 'EF': 59.93, 'Age': 52.19,
'PVC_Prematurity_index': 0.6158, 'QRS_ratio': 1.933, 'mean_HR': 71.28,
'symptom_duration': 14.91, 'QTc_sinus': 425.0, 'PVCCI_dispersion': 57.1,
'CI_variability': 22.98, 'PVC_Peak_QRS_duration': 76.13, 'PVCCI': 513.4,
'PVC_Compansatory_interval': 1044
}
# Create interface
demo = gr.Interface(
fn=predict,
inputs=[
gr.Dropdown(choices=["Yes", "No"], label="Multifocal_PVC"),
gr.Dropdown(choices=["Yes", "No"], label="Nonsustained_VT"),
gr.Dropdown(choices=["Yes", "No"], label="gender"),
gr.Dropdown(choices=["Yes", "No"], label="HTN"),
gr.Dropdown(choices=["Yes", "No"], label="DM"),
gr.Dropdown(choices=["Yes", "No"], label="Fullcompansasion"),
gr.Number(value=numeric_defaults['pvc_percent'], label="pvc_percent"),
gr.Number(value=numeric_defaults['PVCQRS'], label="PVCQRS"),
gr.Number(value=numeric_defaults['EF'], label="EF"),
gr.Number(value=numeric_defaults['Age'], label="Age"),
gr.Number(value=numeric_defaults['PVC_Prematurity_index'], label="PVC_Prematurity_index"),
gr.Number(value=numeric_defaults['QRS_ratio'], label="QRS_ratio"),
gr.Number(value=numeric_defaults['mean_HR'], label="mean_HR"),
gr.Number(value=numeric_defaults['symptom_duration'], label="symptom_duration"),
gr.Number(value=numeric_defaults['QTc_sinus'], label="QTc_sinus"),
gr.Number(value=numeric_defaults['PVCCI_dispersion'], label="PVCCI_dispersion"),
gr.Number(value=numeric_defaults['CI_variability'], label="CI_variability"),
gr.Number(value=numeric_defaults['PVC_Peak_QRS_duration'], label="PVC_Peak_QRS_duration"),
gr.Number(value=numeric_defaults['PVCCI'], label="PVCCI"),
gr.Number(value=numeric_defaults['PVC_Compansatory_interval'], label="PVC_Compansatory_interval")
],
outputs=gr.Label(label="Prediction"),
title="PVC Response Predictor",
description="Enter patient features to predict response probability"
)
if __name__ == "__main__":
print("Launching application...")
demo.launch()""")