TabTransformer / app.py
halil21's picture
Update app.py
ef39e84 verified
with open("app.py", "w") as f:
f.write("""
import os
import sys
import torch
import torch.nn as nn
import torch.nn.functional as F
import gradio as gr
import pickle
import pandas as pd
import warnings
warnings.filterwarnings('ignore')
print("Python version:", sys.version)
print("Torch version:", torch.__version__)
print("Current directory:", os.getcwd())
print("Directory contents:", os.listdir())
class TabTransformer(nn.Module):
def __init__(self, input_dim, num_classes=2, d_model=64, nhead=4, num_layers=3, dropout=0.1):
super().__init__()
self.embedding = nn.Linear(input_dim, d_model)
encoder_layer = nn.TransformerEncoderLayer(
d_model=d_model, nhead=nhead, dim_feedforward=d_model * 4, dropout=dropout, activation='gelu'
)
self.transformer_encoder = nn.TransformerEncoder(encoder_layer, num_layers=num_layers)
self.fc = nn.Sequential(
nn.Linear(d_model, d_model // 2),
nn.ReLU(),
nn.Dropout(dropout),
nn.Linear(d_model // 2, num_classes)
)
def forward(self, x):
x = self.embedding(x)
x = x.unsqueeze(0)
x = self.transformer_encoder(x)
x = x.squeeze(0)
return self.fc(x)
# Özellik listeleri
categorical_features = ['Multifocal_PVC', 'Nonsustained_VT', 'gender', 'HTN', 'DM', 'Fullcompansasion']
numeric_features = ['pvc_percent', 'PVCQRS', 'EF', 'Age', 'PVC_Prematurity_index', 'QRS_ratio',
'mean_HR', 'symptom_duration', 'QTc_sinus', 'PVCCI_dispersion',
'CI_variability', 'PVC_Peak_QRS_duration', 'PVCCI', 'PVC_Compansatory_interval']
# Varsayılan değerler
numeric_defaults = {
'pvc_percent': 11.96, 'PVCQRS': 155.1, 'EF': 59.93, 'Age': 52.19,
'PVC_Prematurity_index': 0.6158, 'QRS_ratio': 1.933, 'mean_HR': 71.28,
'symptom_duration': 14.91, 'QTc_sinus': 425.0, 'PVCCI_dispersion': 57.1,
'CI_variability': 22.98, 'PVC_Peak_QRS_duration': 76.13, 'PVCCI': 513.4,
'PVC_Compansatory_interval': 1044
}
try:
print("Loading model...")
# Model tanımı
input_dim = len(categorical_features) + len(numeric_features)
model = TabTransformer(input_dim=input_dim)
model.load_state_dict(torch.load("tabtransformer_model.pth", map_location=torch.device('cpu')))
model.eval()
print("Model loaded successfully")
print("Loading scaler...")
# Scaler yükleme
with open("trans_scaler.pkl", "rb") as f:
scaler = pickle.load(f)
print("Scaler loaded successfully")
except Exception as e:
print(f"Error during initialization: {str(e)}")
sys.exit(1)
def predict(*inputs):
try:
# Split inputs
cat_inputs = inputs[:len(categorical_features)]
num_inputs = inputs[len(categorical_features):]
# Convert inputs
cat_data = [1 if val == "Yes" else 0 for val in cat_inputs]
num_data = [float(val) for val in num_inputs]
# Create DataFrame
data = pd.DataFrame([cat_data + num_data], columns=categorical_features + numeric_features)
# Scale data
scaled_data = scaler.transform(data)
# Predict
with torch.no_grad():
tensor_data = torch.FloatTensor(scaled_data)
outputs = model(tensor_data)
probs = F.softmax(outputs, dim=1)
response_prob = float(probs[0][0])
non_response_prob = float(probs[0][1])
return f"Response: {response_prob:.1%}\nNon-Response: {non_response_prob:.1%}"
except Exception as e:
print(f"Error in prediction: {str(e)}")
return f"Error: {str(e)}"
# Create interface
with gr.Blocks() as demo:
gr.Markdown("# PVC Response Predictor")
gr.Markdown("Enter patient features to predict response probability")
with gr.Row():
with gr.Column():
inputs = []
# Categorical inputs
for feat in categorical_features:
inputs.append(gr.Dropdown(
choices=["Yes", "No"],
value="No",
label=feat
))
# Numeric inputs
for feat in numeric_features:
inputs.append(gr.Number(
value=numeric_defaults[feat],
label=feat
))
with gr.Column():
output = gr.Textbox(label="Prediction Results")
submit_btn = gr.Button("Predict")
submit_btn.click(
fn=predict,
inputs=inputs,
outputs=output
)
if __name__ == "__main__":
print("Starting server...")
demo.launch(
server_name="0.0.0.0",
show_error=True,
share=False,
debug=True
)""")