Spaces:
Build error
Build error
Update app.py
Browse files
app.py
CHANGED
|
@@ -4,7 +4,7 @@ import torch
|
|
| 4 |
import random
|
| 5 |
import os
|
| 6 |
import gradio as gr
|
| 7 |
-
from transformers import pipeline
|
| 8 |
from datasets import load_dataset
|
| 9 |
from sentence_transformers import SentenceTransformer, util
|
| 10 |
from sklearn.metrics import accuracy_score, precision_score, recall_score, f1_score, confusion_matrix
|
|
@@ -14,13 +14,31 @@ warnings.filterwarnings("ignore")
|
|
| 14 |
# ============================================================================
|
| 15 |
# 1. INITIALIZATION & MODELS
|
| 16 |
# ============================================================================
|
| 17 |
-
device = "mps" if torch.backends.mps.is_available() else "cpu"
|
| 18 |
|
| 19 |
-
print("[INFO] Loading Expert Models...")
|
| 20 |
-
nli_model = pipeline("text-classification", model="pritamdeka/PubMedBERT-MNLI-MedNLI", device=device,truncation=True, max_length=512)
|
| 21 |
sim_model = SentenceTransformer("all-MiniLM-L6-v2", device=device)
|
| 22 |
clf_model = pipeline("text-classification", model="cross-encoder/ms-marco-MiniLM-L-6-v2", device=device, truncation=True, max_length=512)
|
| 23 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 24 |
|
| 25 |
# ============================================================================
|
| 26 |
# 2. CORE FUNCTIONS
|
|
@@ -37,20 +55,41 @@ def detect_similarity(evidence, answer):
|
|
| 37 |
def detect_uncertainty(evidence, answer):
|
| 38 |
return clf_model(f"{evidence} [SEP] {answer}")[0]["score"]
|
| 39 |
|
| 40 |
-
def
|
| 41 |
-
|
| 42 |
-
|
| 43 |
-
|
| 44 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 45 |
|
| 46 |
# ============================================================================
|
| 47 |
-
# 3. THE AUDIT ENGINE (
|
| 48 |
# ============================================================================
|
| 49 |
def run_clinical_audit():
|
| 50 |
-
# Load Dataset (Streaming)
|
| 51 |
dataset = load_dataset("UTAustin-AIHealth/MedHallu", "pqa_labeled", split="train", streaming=True)
|
| 52 |
-
data_pool = list(dataset.take(
|
| 53 |
-
samples = random.sample(data_pool,
|
| 54 |
|
| 55 |
results = []
|
| 56 |
y_true, y_pred = [], []
|
|
@@ -59,45 +98,53 @@ def run_clinical_audit():
|
|
| 59 |
evidence = " ".join(sample["Knowledge"])
|
| 60 |
query = sample["Question"]
|
| 61 |
factual = sample["Ground Truth"]
|
|
|
|
| 62 |
|
| 63 |
-
# Balanced flip
|
| 64 |
label = 1 if i % 2 == 0 else 0
|
| 65 |
-
llm_answer =
|
| 66 |
|
| 67 |
-
# Detection logic
|
| 68 |
nli_label, _ = detect_nli(evidence, llm_answer)
|
| 69 |
sim_score = detect_similarity(evidence, llm_answer)
|
| 70 |
unc_score = detect_uncertainty(evidence, llm_answer)
|
| 71 |
|
| 72 |
detected = 0
|
| 73 |
-
reason = "
|
| 74 |
if nli_label == "contradiction" or sim_score < 0.30 or unc_score < 0.25:
|
| 75 |
detected = 1
|
| 76 |
-
reason = "Hallucination Detected"
|
| 77 |
|
| 78 |
y_true.append(label)
|
| 79 |
y_pred.append(detected)
|
| 80 |
|
| 81 |
correction = None
|
| 82 |
if detected:
|
| 83 |
-
|
| 84 |
-
correction = {
|
|
|
|
|
|
|
|
|
|
| 85 |
|
| 86 |
results.append({
|
| 87 |
"case_id": i + 1,
|
| 88 |
"query": query,
|
| 89 |
-
"
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 90 |
"correction": correction
|
| 91 |
})
|
| 92 |
|
| 93 |
-
# Metrics
|
| 94 |
metrics = {
|
| 95 |
"accuracy": accuracy_score(y_true, y_pred),
|
| 96 |
"recall": recall_score(y_true, y_pred),
|
| 97 |
-
"f1": f1_score(y_true, y_pred)
|
|
|
|
| 98 |
}
|
| 99 |
|
| 100 |
-
# Save File
|
| 101 |
file_name = "final_clinical_hallucination_results.json"
|
| 102 |
with open(file_name, "w") as f:
|
| 103 |
json.dump({"metrics": metrics, "results": results}, f, indent=2)
|
|
@@ -105,18 +152,16 @@ def run_clinical_audit():
|
|
| 105 |
return f"✅ Audit Complete!\nAccuracy: {metrics['accuracy']:.2f}\nRecall: {metrics['recall']:.2f}", file_name
|
| 106 |
|
| 107 |
# ============================================================================
|
| 108 |
-
# 4. GRADIO INTERFACE
|
| 109 |
# ============================================================================
|
| 110 |
with gr.Blocks() as demo:
|
| 111 |
-
gr.Markdown("# 🩺 Healthcare LLM
|
| 112 |
-
gr.Markdown("
|
| 113 |
-
|
| 114 |
-
with gr.Row():
|
| 115 |
-
run_btn = gr.Button("🚀 Start Clinical Audit", variant="primary")
|
| 116 |
|
| 117 |
-
|
| 118 |
-
|
|
|
|
| 119 |
|
| 120 |
-
run_btn.click(fn=run_clinical_audit,
|
| 121 |
|
| 122 |
demo.launch()
|
|
|
|
| 4 |
import random
|
| 5 |
import os
|
| 6 |
import gradio as gr
|
| 7 |
+
from transformers import pipeline, AutoModelForCausalLM, AutoTokenizer, BitsAndBytesConfig
|
| 8 |
from datasets import load_dataset
|
| 9 |
from sentence_transformers import SentenceTransformer, util
|
| 10 |
from sklearn.metrics import accuracy_score, precision_score, recall_score, f1_score, confusion_matrix
|
|
|
|
| 14 |
# ============================================================================
|
| 15 |
# 1. INITIALIZATION & MODELS
|
| 16 |
# ============================================================================
|
| 17 |
+
device = "cuda" if torch.cuda.is_available() else ("mps" if torch.backends.mps.is_available() else "cpu")
|
| 18 |
|
| 19 |
+
print("[INFO] Loading Expert Models (NLI, Similarity, Uncertainty)...")
|
| 20 |
+
nli_model = pipeline("text-classification", model="pritamdeka/PubMedBERT-MNLI-MedNLI", device=device, truncation=True, max_length=512)
|
| 21 |
sim_model = SentenceTransformer("all-MiniLM-L6-v2", device=device)
|
| 22 |
clf_model = pipeline("text-classification", model="cross-encoder/ms-marco-MiniLM-L-6-v2", device=device, truncation=True, max_length=512)
|
| 23 |
+
|
| 24 |
+
# Nous-Hermes-2-Mistral-7B-DPO Yükleme (4-bit Sıkıştırma ile)
|
| 25 |
+
print("[INFO] Loading Nous-Hermes-2-Mistral-7B-DPO (4-bit optimized)...")
|
| 26 |
+
model_id = "NousResearch/Nous-Hermes-2-Mistral-7B-DPO"
|
| 27 |
+
|
| 28 |
+
# Ücretsiz HF Space (16GB VRAM) için kritik ayarlar
|
| 29 |
+
quant_config = BitsAndBytesConfig(
|
| 30 |
+
load_in_4bit=True,
|
| 31 |
+
bnb_4bit_compute_dtype=torch.float16,
|
| 32 |
+
bnb_4bit_quant_type="nf4",
|
| 33 |
+
bnb_4bit_use_double_quant=True
|
| 34 |
+
)
|
| 35 |
+
|
| 36 |
+
tokenizer = AutoTokenizer.from_pretrained(model_id)
|
| 37 |
+
correction_model = AutoModelForCausalLM.from_pretrained(
|
| 38 |
+
model_id,
|
| 39 |
+
quantization_config=quant_config,
|
| 40 |
+
device_map="auto"
|
| 41 |
+
)
|
| 42 |
|
| 43 |
# ============================================================================
|
| 44 |
# 2. CORE FUNCTIONS
|
|
|
|
| 55 |
def detect_uncertainty(evidence, answer):
|
| 56 |
return clf_model(f"{evidence} [SEP] {answer}")[0]["score"]
|
| 57 |
|
| 58 |
+
def generate_correction(query, wrong, truth):
|
| 59 |
+
# Nous-Hermes-2 ChatML Formatı
|
| 60 |
+
prompt = f"""<|im_start|>system
|
| 61 |
+
You are a board-certified medical doctor. Analyze the clinical error and provide a fix based ONLY on verified evidence.<|im_end|>
|
| 62 |
+
<|im_start|>user
|
| 63 |
+
QUESTION: {query}
|
| 64 |
+
INCORRECT ANSWER: {wrong}
|
| 65 |
+
VERIFIED EVIDENCE: {truth}
|
| 66 |
+
|
| 67 |
+
TASK:
|
| 68 |
+
1. Explain why the answer is incorrect.
|
| 69 |
+
2. Provide the clinically accurate correction.<|im_end|>
|
| 70 |
+
<|im_start|>assistant
|
| 71 |
+
"""
|
| 72 |
+
inputs = tokenizer(prompt, return_tensors="pt").to(device)
|
| 73 |
+
|
| 74 |
+
with torch.no_grad():
|
| 75 |
+
outputs = correction_model.generate(
|
| 76 |
+
**inputs,
|
| 77 |
+
max_new_tokens=300,
|
| 78 |
+
temperature=0.1, # Tıbbi doğruluk için düşük sıcaklık
|
| 79 |
+
eos_token_id=tokenizer.eos_token_id
|
| 80 |
+
)
|
| 81 |
+
|
| 82 |
+
decoded = tokenizer.decode(outputs[0], skip_special_tokens=True)
|
| 83 |
+
# Sadece asistanın cevabını ayıklıyoruz
|
| 84 |
+
return decoded.split("assistant")[-1].strip()
|
| 85 |
|
| 86 |
# ============================================================================
|
| 87 |
+
# 3. THE AUDIT ENGINE (N=20)
|
| 88 |
# ============================================================================
|
| 89 |
def run_clinical_audit():
|
|
|
|
| 90 |
dataset = load_dataset("UTAustin-AIHealth/MedHallu", "pqa_labeled", split="train", streaming=True)
|
| 91 |
+
data_pool = list(dataset.take(150))
|
| 92 |
+
samples = random.sample(data_pool, 20)
|
| 93 |
|
| 94 |
results = []
|
| 95 |
y_true, y_pred = [], []
|
|
|
|
| 98 |
evidence = " ".join(sample["Knowledge"])
|
| 99 |
query = sample["Question"]
|
| 100 |
factual = sample["Ground Truth"]
|
| 101 |
+
hallucinated = sample["Hallucinated Answer"]
|
| 102 |
|
|
|
|
| 103 |
label = 1 if i % 2 == 0 else 0
|
| 104 |
+
llm_answer = hallucinated if label == 1 else factual
|
| 105 |
|
|
|
|
| 106 |
nli_label, _ = detect_nli(evidence, llm_answer)
|
| 107 |
sim_score = detect_similarity(evidence, llm_answer)
|
| 108 |
unc_score = detect_uncertainty(evidence, llm_answer)
|
| 109 |
|
| 110 |
detected = 0
|
| 111 |
+
reason = "Factual"
|
| 112 |
if nli_label == "contradiction" or sim_score < 0.30 or unc_score < 0.25:
|
| 113 |
detected = 1
|
| 114 |
+
reason = "Clinical Hallucination Detected"
|
| 115 |
|
| 116 |
y_true.append(label)
|
| 117 |
y_pred.append(detected)
|
| 118 |
|
| 119 |
correction = None
|
| 120 |
if detected:
|
| 121 |
+
corrected_text = generate_correction(query, llm_answer, factual)
|
| 122 |
+
correction = {
|
| 123 |
+
"physician_prompt": "Nous-Hermes-2 ChatML Structure",
|
| 124 |
+
"llm_corrected_answer": corrected_text
|
| 125 |
+
}
|
| 126 |
|
| 127 |
results.append({
|
| 128 |
"case_id": i + 1,
|
| 129 |
"query": query,
|
| 130 |
+
"llm_original_answer": llm_answer,
|
| 131 |
+
"ground_truth_answer": factual,
|
| 132 |
+
"detection": {
|
| 133 |
+
"label": label,
|
| 134 |
+
"prediction": detected,
|
| 135 |
+
"reason": reason,
|
| 136 |
+
"signals": {"nli": nli_label, "similarity": round(sim_score, 3), "uncertainty": round(unc_score, 3)}
|
| 137 |
+
},
|
| 138 |
"correction": correction
|
| 139 |
})
|
| 140 |
|
|
|
|
| 141 |
metrics = {
|
| 142 |
"accuracy": accuracy_score(y_true, y_pred),
|
| 143 |
"recall": recall_score(y_true, y_pred),
|
| 144 |
+
"f1": f1_score(y_true, y_pred),
|
| 145 |
+
"confusion_matrix": confusion_matrix(y_true, y_pred).tolist()
|
| 146 |
}
|
| 147 |
|
|
|
|
| 148 |
file_name = "final_clinical_hallucination_results.json"
|
| 149 |
with open(file_name, "w") as f:
|
| 150 |
json.dump({"metrics": metrics, "results": results}, f, indent=2)
|
|
|
|
| 152 |
return f"✅ Audit Complete!\nAccuracy: {metrics['accuracy']:.2f}\nRecall: {metrics['recall']:.2f}", file_name
|
| 153 |
|
| 154 |
# ============================================================================
|
| 155 |
+
# 4. GRADIO INTERFACE
|
| 156 |
# ============================================================================
|
| 157 |
with gr.Blocks() as demo:
|
| 158 |
+
gr.Markdown("# 🩺 Healthcare LLM Auditor (Nous-Hermes-2 Engine)")
|
| 159 |
+
gr.Markdown("Bu sistem 20 vakayı 4-bit optimize edilmiş Nous-Hermes-2 ile denetler.")
|
|
|
|
|
|
|
|
|
|
| 160 |
|
| 161 |
+
run_btn = gr.Button("🚀 Start Clinical Audit", variant="primary")
|
| 162 |
+
output_text = gr.Textbox(label="Status Summary")
|
| 163 |
+
output_file = gr.File(label="📥 Download JSON Results")
|
| 164 |
|
| 165 |
+
run_btn.click(fn=run_clinical_audit, outputs=[output_text, output_file])
|
| 166 |
|
| 167 |
demo.launch()
|