Spaces:
Running
Running
Commit ·
a952df1
1
Parent(s): 2981176
update
Browse files
app.py
CHANGED
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@@ -179,22 +179,14 @@ def find_relations_with_entities(entities, entities_data):
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return relations
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def
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"""
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st.title("Medical Report Review System")
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# Load data
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if 'data' not in st.session_state:
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st.session_state.data = load_data()
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# Create two columns layout
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col1, col2 = st.columns(2)
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with col1:
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st.subheader("Reports to Review")
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# Get unreviewed reports list
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unreviewed_reports = [
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report_id for report_id, content in st.session_state.
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if 'reviewed' not in content
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]
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selected_report = st.selectbox(
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@@ -205,9 +197,8 @@ def main():
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with col2:
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st.subheader("Reviewed Reports")
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# Get reviewed reports list
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reviewed_reports = [
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report_id for report_id, content in st.session_state.
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if content.get('reviewed', False)
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]
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st.selectbox(
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@@ -216,59 +207,84 @@ def main():
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key="reviewed"
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)
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entities_data = report_data['entities']
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#
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#
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#
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st.
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if st.button("Update Graph"):
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# Update relations using current selections
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relations = find_relations_with_entities(selections, entities_data)
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create_graph(selections, relations)
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else:
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# Display original graph
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relations = find_relations_with_entities(entities, entities_data)
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create_graph(entities, relations)
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# Add review functionality
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if st.button("Mark as Reviewed"):
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# Convert selections back to entities data
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updated_entities = selection2entities(selections)
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# Keep original relations
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for entity_id, entity in updated_entities.items():
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if entity_id in entities_data:
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entity['relations'] = entities_data[entity_id]['relations']
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st.session_state.data[selected_report]['reviewed'] = {
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'entities': updated_entities
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}
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save_data(st.session_state.data)
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st.success("Review status saved!")
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st.rerun()
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if __name__ == "__main__":
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return relations
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def setup_report_selection():
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"""Setup report selection columns and return selected report"""
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col1, col2 = st.columns(2)
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with col1:
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st.subheader("Reports to Review")
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unreviewed_reports = [
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report_id for report_id, content in st.session_state.reports_json.items()
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if 'reviewed' not in content
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]
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selected_report = st.selectbox(
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with col2:
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st.subheader("Reviewed Reports")
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reviewed_reports = [
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report_id for report_id, content in st.session_state.reports_json.items()
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if content.get('reviewed', False)
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]
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st.selectbox(
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key="reviewed"
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)
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return selected_report
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def display_report_content(report_data):
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"""Display the report text content"""
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st.subheader("Report Content:")
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st.markdown(report_data['text'])
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def display_entities(report_text, entities):
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"""Setup and display entity annotation interface"""
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st.subheader("Entity Annotation:")
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selections = label_select(
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body=report_text,
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labels=list(set(e.labels[0] for e in entities)),
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selections=entities,
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)
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st.write(selections)
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return selections, entities
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def display_relationship_graph(entities, entities_data):
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st.subheader("Entity Relationship Graph:")
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relations = find_relations_with_entities(entities, entities_data)
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create_graph(entities, relations)
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def handle_review_submission(selected_report, selections, entities_data):
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"""Handle the review submission process"""
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if st.button("Mark as Reviewed"):
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updated_entities = selection2entities(selections)
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for entity_id, entity in updated_entities.items():
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if entity_id in entities_data:
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entity['relations'] = entities_data[entity_id]['relations']
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st.session_state.reports_json[selected_report]['reviewed'] = {
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'entities': updated_entities
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}
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save_data(st.session_state.reports_json)
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st.success("Review status saved!")
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st.rerun()
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def main():
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"""Main application"""
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st.title("Medical Report Review System")
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# Load data
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if 'reports_json' not in st.session_state:
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st.session_state.reports_json = load_data()
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# Setup report selection
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selected_report = setup_report_selection()
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if selected_report:
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report_data = st.session_state.reports_json[selected_report]
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entities_data = report_data['entities']
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# Display report content
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display_report_content(report_data)
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# Setup entity annotation
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selections = entities2Selection(report_data['text'], entities_data)
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# Display entities
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display_entities(report_data['text'], selections)
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# Display NEN
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# 使用当前选择或原始实体创建关系图
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current_entities = selections if st.button(
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"Update Graph") else selections
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display_relationship_graph(current_entities, entities_data)
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# Handle review submission
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handle_review_submission(selected_report, selections, entities_data)
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if __name__ == "__main__":
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ie.py
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File without changes
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nen.py
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File without changes
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test.py
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@@ -0,0 +1,76 @@
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import streamlit as st
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# 存储标注信息
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if "annotations" not in st.session_state:
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st.session_state.annotations = []
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# 添加标注
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def add_annotation(selected_text, label):
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start_idx = text.find(selected_text)
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if start_idx != -1:
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end_idx = start_idx + len(selected_text)
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st.session_state.annotations.append(
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{"text": selected_text, "label": label, "start": start_idx, "end": end_idx})
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# 移除标注
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def remove_annotation(annotation):
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st.session_state.annotations = [
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ann for ann in st.session_state.annotations if ann != annotation
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]
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# 生成带按钮的高亮文本
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def render_highlighted_text(text, annotations):
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annotated_text = []
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last_idx = 0
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for idx, ann in enumerate(sorted(annotations, key=lambda x: x["start"])):
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# 添加非标注的部分
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annotated_text.append(text[last_idx:ann["start"]])
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# 添加标注的按钮
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if st.button(f"{ann['text']} ({ann['label']})", key=f"annotation-{idx}"):
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st.session_state.clicked_annotation = ann
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last_idx = ann["end"]
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# 添加剩余的部分
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annotated_text.append(text[last_idx:])
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return "".join(annotated_text)
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# 主界面
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st.title("文本标注工具")
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st.write("输入文本并对其中的部分内容进行标注。")
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# 输入文本
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text = st.text_area("输入文本:", height=200)
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# 文本选择与标注
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if text:
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st.write("选中文字并进行标注:")
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col1, col2 = st.columns([3, 1])
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# 输入标注的标签
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with col1:
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selected_text = st.text_input("选中的文本:")
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with col2:
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label = st.text_input("标签:")
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if st.button("添加标注"):
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if selected_text and label and selected_text in text:
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add_annotation(selected_text, label)
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else:
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st.warning("请选择有效的文本并输入标签!")
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# 渲染高亮文本
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st.markdown(render_highlighted_text(text, st.session_state.annotations))
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# 点击标注的文本
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if "clicked_annotation" in st.session_state:
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clicked_annotation = st.session_state.clicked_annotation
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st.write(
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f"你点击了: **{clicked_annotation['text']}** (标签: {clicked_annotation['label']})")
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if st.button("删除标注", key="delete"):
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remove_annotation(clicked_annotation)
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del st.session_state.clicked_annotation
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