fix: Fix directory references to use medicode

README.md

@@ -28,7 +28,7 @@ The app is configured to deploy to Fly.io via a `fly.toml` file. To deploy, run
 To build the code vectors for the ICD-9 codelist for the deployed environment:
 
 1. Connect to the server with `fly ssh console`.
-2. Run `/app/bin/medical_transcription eval Medicode.Release.precompute_code_vectors`. This will prepare the vectors in the database if they are not present.
+2. Run `/app/bin/medicode eval Medicode.Release.precompute_code_vectors`. This will prepare the vectors in the database if they are not present.
 
 ### Livebook
 
@@ -49,14 +49,14 @@ In addition to connecting to the deployed application via `iex`, Livebook suppor
 - What the initial `1` for `chmod` means: <https://www.linuxnix.com/sticky-bit-set-linux/>
 - How to update the permissions of a mounted volume: <https://serverfault.com/a/984599>
 
-3. Build the image with: `docker build . -t headwayio/medical_transcription`
-4. Run a container with: `docker run --env-file ./.env -p 4000:4000 headwayio/medical_transcription`
+3. Build the image with: `docker build . -t headwayio/medicode`
+4. Run a container with: `docker run --env-file ./.env -p 4000:4000 headwayio/medicode`
 
 ### Caveats
 
 You may need to make a few changes to get the app running in Docker at the moment:
 
-- In `lib/medical_transcription/application.ex`, comment out the `DNSCluster` child spec.
+- In `lib/medicode/application.ex`, comment out the `DNSCluster` child spec.
 - In `rel/env.sh.eex`, comment out the `ERL_AFLAGS`, `RELEASE_DISTRIBUTION`, and `RELEASE_NODE` environment variables.
 
 ## Learn more

assets/tailwind.config.js

@@ -10,8 +10,8 @@ module.exports = {
   // important: ".medical-transcription-web",
   content: [
     "./js/**/*.js",
-    "../lib/medical_transcription_web.ex",
-    "../lib/medical_transcription_web/**/*.*ex",
+    "../lib/medicode_web.ex",
+    "../lib/medicode_web/**/*.*ex",
   ],
   theme: {
     extend: {

config/dev.exs

@@ -57,7 +57,7 @@ config :medicode, MedicodeWeb.Endpoint,
     patterns: [
       ~r"priv/static/.*(js|css|png|jpeg|jpg|gif|svg)$",
       ~r"priv/gettext/.*(po)$",
-      ~r"lib/medical_transcription_web/(controllers|live|components)/.*(ex|heex)$",
+      ~r"lib/medicode_web/(controllers|live|components)/.*(ex|heex)$",
       ~r"storybook/.*(exs)$"
     ]
   ]

config/runtime.exs

@@ -12,7 +12,7 @@ import Config
 # If you use `mix release`, you need to explicitly enable the server
 # by passing the PHX_SERVER=true when you start it:
 #
-#     PHX_SERVER=true bin/medical_transcription start
+#     PHX_SERVER=true bin/medicode start
 #
 # Alternatively, you can use `mix phx.gen.release` to generate a `bin/server`
 # script that automatically sets the env var above.

config/test.exs

@@ -16,7 +16,7 @@ if System.get_env("DATABASE_URL") do
 else
   config :medicode, Medicode.Repo,
     hostname: "localhost",
-    database: "medical_transcription_test#{System.get_env("MIX_TEST_PARTITION")}",
+    database: "medicode_test#{System.get_env("MIX_TEST_PARTITION")}",
     pool: Ecto.Adapters.SQL.Sandbox,
     pool_size: 10
 end

lib/medicode_web/controllers/error_html.ex

@@ -5,8 +5,8 @@ defmodule MedicodeWeb.ErrorHTML do
   # uncomment the embed_templates/1 call below
   # and add pages to the error directory:
   #
-  #   * lib/medical_transcription_web/controllers/error_html/404.html.heex
-  #   * lib/medical_transcription_web/controllers/error_html/500.html.heex
+  #   * lib/medicode_web/controllers/error_html/404.html.heex
+  #   * lib/medicode_web/controllers/error_html/500.html.heex
   #
   embed_templates "error_html/*"
 

lib/medicode_web/endpoint.ex

@@ -6,7 +6,7 @@ defmodule MedicodeWeb.Endpoint do
   # Set :encryption_salt if you would also like to encrypt it.
   @session_options [
     store: :cookie,
-    key: "_medical_transcription_key",
+    key: "_medicode_key",
     signing_salt: "s8MyOPRO",
     same_site: "Lax"
   ]

lib/medicode_web/telemetry.ex

@@ -52,23 +52,23 @@ defmodule MedicodeWeb.Telemetry do
       ),
 
       # Database Metrics
-      summary("medical_transcription.repo.query.total_time",
+      summary("medicode.repo.query.total_time",
         unit: {:native, :millisecond},
         description: "The sum of the other measurements"
       ),
-      summary("medical_transcription.repo.query.decode_time",
+      summary("medicode.repo.query.decode_time",
         unit: {:native, :millisecond},
         description: "The time spent decoding the data received from the database"
       ),
-      summary("medical_transcription.repo.query.query_time",
+      summary("medicode.repo.query.query_time",
         unit: {:native, :millisecond},
         description: "The time spent executing the query"
       ),
-      summary("medical_transcription.repo.query.queue_time",
+      summary("medicode.repo.query.queue_time",
         unit: {:native, :millisecond},
         description: "The time spent waiting for a database connection"
       ),
-      summary("medical_transcription.repo.query.idle_time",
+      summary("medicode.repo.query.idle_time",
         unit: {:native, :millisecond},
         description:
           "The time the connection spent waiting before being checked out for the query"

lib/medicode_web/user_auth.ex

@@ -14,7 +14,7 @@ defmodule MedicodeWeb.UserAuth do
   # If you want bump or reduce this value, also change
   # the token expiry itself in UserToken.
   @max_age 60 * 60 * 24 * 60
-  @remember_me_cookie "_medical_transcription_web_user_remember_me"
+  @remember_me_cookie "_medicode_web_user_remember_me"
   @remember_me_options [sign: true, max_age: @max_age, same_site: "Lax"]
 
   @doc """

rel/overlays/bin/migrate

@@ -1,3 +1,3 @@
 #!/bin/sh
 cd -P -- "$(dirname -- "$0")"
-exec ./medical_transcription eval Medicode.Release.migrate
+exec ./medicode eval Medicode.Release.migrate

rel/overlays/bin/migrate.bat

@@ -1 +1 @@
-call "%~dp0\medical_transcription" eval Medicode.Release.migrate
+call "%~dp0\medicode" eval Medicode.Release.migrate

rel/overlays/bin/server

@@ -1,3 +1,3 @@
 #!/bin/sh
 cd -P -- "$(dirname -- "$0")"
-PHX_SERVER=true exec ./medical_transcription start
+PHX_SERVER=true exec ./medicode start

rel/overlays/bin/server.bat

@@ -1,2 +1,2 @@
 set PHX_SERVER=true
-call "%~dp0\medical_transcription" start
+call "%~dp0\medicode" start

test/medicode_web/controllers/user_session_controller_test.exs

@@ -35,7 +35,7 @@ defmodule MedicodeWeb.UserSessionControllerTest do
           }
         })
 
-      assert conn.resp_cookies["_medical_transcription_web_user_remember_me"]
+      assert conn.resp_cookies["_medicode_web_user_remember_me"]
       assert redirected_to(conn) == ~p"/"
     end
 

test/medicode_web/user_auth_test.exs

@@ -7,7 +7,7 @@ defmodule MedicodeWeb.UserAuthTest do
 
   import Medicode.AccountsFixtures
 
-  @remember_me_cookie "_medical_transcription_web_user_remember_me"
+  @remember_me_cookie "_medicode_web_user_remember_me"
 
   setup %{conn: conn} do
     conn =