aagamjtdev commited on
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8348feb
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1 Parent(s): 5bce4fc

change with finetuned model

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Files changed (1) hide show
  1. HF_LayoutLM_with_Passage.py +434 -37
HF_LayoutLM_with_Passage.py CHANGED
@@ -1,3 +1,369 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
 
2
  import json
3
  import argparse
@@ -6,21 +372,28 @@ import random
6
  import torch
7
  import torch.nn as nn
8
  from torch.utils.data import Dataset, DataLoader, random_split
 
9
  from transformers import LayoutLMv3TokenizerFast, LayoutLMv3Model
 
 
10
  from TorchCRF import CRF
11
  from torch.optim import AdamW
12
  from tqdm import tqdm
13
  from sklearn.metrics import precision_recall_fscore_support
14
 
15
-
16
  # --- Configuration for Augmentation ---
17
  MAX_BBOX_DIMENSION = 999
18
  MAX_SHIFT = 30
19
  AUGMENTATION_FACTOR = 1
20
 
21
-
22
  # -------------------------------------
23
 
 
 
 
 
 
 
24
 
25
  # -------------------------
26
  # Step 1: Preprocessing (Label Studio β†’ BIO + bboxes)
@@ -149,7 +522,7 @@ def augment_and_save_dataset(input_json_path, output_json_path):
149
 
150
 
151
  # -------------------------
152
- # Step 2: Dataset Class (Unchanged)
153
  # -------------------------
154
  class LayoutDataset(Dataset):
155
  def __init__(self, json_path, tokenizer, label2id, max_len=512):
@@ -193,13 +566,50 @@ class LayoutDataset(Dataset):
193
 
194
 
195
  # -------------------------
196
- # Step 3: Model Architecture (Unchanged)
197
  # -------------------------
198
  class LayoutLMv3CRF(nn.Module):
199
- def __init__(self, model_name, num_labels):
200
  super().__init__()
201
- self.layoutlm = LayoutLMv3Model.from_pretrained(model_name)
202
- # self.layoutlm = LayoutLMv3Model.from_pretrained("heerjtdev/edugenius")
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
203
  self.dropout = nn.Dropout(0.1)
204
  self.classifier = nn.Linear(self.layoutlm.config.hidden_size, num_labels)
205
  self.crf = CRF(num_labels)
@@ -220,7 +630,7 @@ class LayoutLMv3CRF(nn.Module):
220
 
221
 
222
  # -------------------------
223
- # Step 4: Training + Evaluation (Unchanged)
224
  # -------------------------
225
  def train_one_epoch(model, dataloader, optimizer, device):
226
  model.train()
@@ -243,21 +653,22 @@ def evaluate(model, dataloader, device, id2label):
243
  for batch in tqdm(dataloader, desc="Evaluating"):
244
  batch = {k: v.to(device) for k, v in batch.items()}
245
  labels = batch.pop("labels").cpu().numpy()
 
246
  preds = model(**batch)
247
  for p, l, mask in zip(preds, labels, batch["attention_mask"].cpu().numpy()):
248
  valid = mask == 1
249
  l = l[valid].tolist()
250
  all_labels.extend(l)
 
251
  all_preds.extend(p[:len(l)])
252
 
253
- # Exclude the "O" label and other special tokens if necessary, but using 'micro' average
254
- # on all valid tokens is typically fine for the initial evaluation.
255
  precision, recall, f1, _ = precision_recall_fscore_support(all_labels, all_preds, average="micro", zero_division=0)
256
  return precision, recall, f1
257
 
258
 
259
  # -------------------------
260
- # Step 5: Main Pipeline (Training) - MODIFIED LABELS + FILE PATH FIX
261
  # -------------------------
262
  def main(args):
263
  # LABELS UPDATED: Added SECTION_HEADING and PASSAGE
@@ -272,34 +683,26 @@ def main(args):
272
  label2id = {l: i for i, l in enumerate(labels)}
273
  id2label = {i: l for l, i in label2id.items()}
274
 
275
- # --- FIX for FileNotFoundError: Use a temporary directory for intermediate files ---
276
  TEMP_DIR = "temp_intermediate_files"
277
  os.makedirs(TEMP_DIR, exist_ok=True)
278
  print(f"\n--- SETUP PHASE: Created temp directory: {TEMP_DIR} ---")
279
 
280
- # 1. Preprocess and save the initial training data
281
  print("\n--- START PHASE: PREPROCESSING ---")
282
-
283
- # FIX: Prepend the directory path to the file name
284
  initial_bio_json = os.path.join(TEMP_DIR, "training_data_bio_bboxes.json")
285
  preprocess_labelstudio(args.input, initial_bio_json)
286
 
287
- # 2. Augment the dataset with translated bboxes
288
  print("\n--- START PHASE: AUGMENTATION ---")
289
-
290
- # FIX: Prepend the directory path to the file name
291
  augmented_bio_json = os.path.join(TEMP_DIR, "augmented_training_data_bio_bboxes.json")
292
  final_data_path = augment_and_save_dataset(initial_bio_json, augmented_bio_json)
293
 
294
- # Clean up the intermediary file (optional)
295
- # import shutil
296
- # shutil.rmtree(TEMP_DIR)
297
-
298
  # 3. Load and split augmented dataset
299
  print("\n--- START PHASE: MODEL/DATASET SETUP ---")
300
- #MODEL_ID = "heerjtdev/edugenius"
301
- tokenizer = LayoutLMv3TokenizerFast.from_pretrained("microsoft/layoutlmv3-base")
302
- #tokenizer = LayoutLMv3TokenizerFast.from_pretrained(MODEL_ID)
303
 
304
  dataset = LayoutDataset(final_data_path, tokenizer, label2id, max_len=args.max_len)
305
  val_size = int(0.2 * len(dataset))
@@ -314,17 +717,13 @@ def main(args):
314
  # 4. Initialize and load model
315
  device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
316
  print(f"Using device: {device}")
317
- # Num_labels is based on the updated 'labels' list
318
- model = LayoutLMv3CRF("microsoft/layoutlmv3-base", num_labels=len(labels)).to(device)
319
- # model = LayoutLMv3CRF(MODEL_ID, num_labels=len(labels)).to(device)
 
320
  ckpt_path = "checkpoints/layoutlmv3_crf_passage.pth"
321
  os.makedirs("checkpoints", exist_ok=True)
322
  if os.path.exists(ckpt_path):
323
- # NOTE: Loading an old checkpoint will likely fail now because num_labels has changed,
324
- # unless the old checkpoint had the *exact* same number of labels.
325
- # It is recommended to start training from scratch.
326
- # print(f"πŸ”„ Loading checkpoint from {ckpt_path}")
327
- # model.load_state_dict(torch.load(ckpt_path, map_location=device))
328
  print(f"⚠️ Starting fresh training. Old checkpoint {ckpt_path} may be incompatible with new label count.")
329
 
330
  optimizer = AdamW(model.parameters(), lr=args.lr)
@@ -343,10 +742,8 @@ def main(args):
343
  print(f"πŸ’Ύ Model saved at {ckpt_path}")
344
 
345
 
346
-
347
-
348
  # -------------------------
349
- # Step 7: Main Execution (Unchanged)
350
  # -------------------------
351
  if __name__ == "__main__":
352
  parser = argparse.ArgumentParser(description="LayoutLMv3 Fine-tuning and Inference Script.")
@@ -362,4 +759,4 @@ if __name__ == "__main__":
362
  if args.mode == "train":
363
  if not args.input:
364
  parser.error("--input is required for 'train' mode.")
365
- main(args)
 
1
+ #
2
+ # import json
3
+ # import argparse
4
+ # import os
5
+ # import random
6
+ # import torch
7
+ # import torch.nn as nn
8
+ # from torch.utils.data import Dataset, DataLoader, random_split
9
+ # from transformers import LayoutLMv3TokenizerFast, LayoutLMv3Model
10
+ # from TorchCRF import CRF
11
+ # from torch.optim import AdamW
12
+ # from tqdm import tqdm
13
+ # from sklearn.metrics import precision_recall_fscore_support
14
+ #
15
+ #
16
+ # # --- Configuration for Augmentation ---
17
+ # MAX_BBOX_DIMENSION = 999
18
+ # MAX_SHIFT = 30
19
+ # AUGMENTATION_FACTOR = 1
20
+ #
21
+ #
22
+ # # -------------------------------------
23
+ #
24
+ #
25
+ # # -------------------------
26
+ # # Step 1: Preprocessing (Label Studio β†’ BIO + bboxes)
27
+ # # -------------------------
28
+ # def preprocess_labelstudio(input_path, output_path):
29
+ # with open(input_path, "r", encoding="utf-8") as f:
30
+ # data = json.load(f)
31
+ #
32
+ # processed = []
33
+ # total_items = len(data) # Added for potential verbose logging
34
+ # print(f"πŸ”„ Starting preprocessing of {total_items} documents...")
35
+ #
36
+ # for item in data:
37
+ # words = item["data"]["original_words"]
38
+ # bboxes = item["data"]["original_bboxes"]
39
+ # labels = ["O"] * len(words)
40
+ #
41
+ # if "annotations" in item:
42
+ # for ann in item["annotations"]:
43
+ # for res in ann["result"]:
44
+ # # Check if the result item is a span annotation
45
+ # if "value" in res and "labels" in res["value"]:
46
+ # text = res["value"]["text"]
47
+ # tag = res["value"]["labels"][0]
48
+ # # Some tokenizers may split words, so we must find a consecutive word match.
49
+ # text_tokens = text.split()
50
+ #
51
+ # for i in range(len(words) - len(text_tokens) + 1):
52
+ # if words[i:i + len(text_tokens)] == text_tokens:
53
+ # labels[i] = f"B-{tag}"
54
+ # for j in range(1, len(text_tokens)):
55
+ # labels[i + j] = f"I-{tag}"
56
+ # break # Move to next annotation if a match is found
57
+ #
58
+ # processed.append({"tokens": words, "labels": labels, "bboxes": bboxes})
59
+ #
60
+ # with open(output_path, "w", encoding="utf-8") as f:
61
+ # json.dump(processed, f, indent=2, ensure_ascii=False)
62
+ #
63
+ # print(f"βœ… Preprocessed data saved to {output_path}")
64
+ # return output_path
65
+ #
66
+ #
67
+ # # -------------------------
68
+ # # Step 1.5: Bounding Box Augmentation
69
+ # # -------------------------
70
+ #
71
+ # def translate_bbox(bbox, shift_x, shift_y):
72
+ # """
73
+ # Translates a single bounding box [x_min, y_min, x_max, y_max] by (shift_x, shift_y)
74
+ # and clamps the coordinates to the valid range [0, MAX_BBOX_DIMENSION].
75
+ # """
76
+ # x_min, y_min, x_max, y_max = bbox
77
+ #
78
+ # new_x_min = x_min + shift_x
79
+ # new_y_min = y_min + shift_y
80
+ # new_x_max = x_max + shift_x
81
+ # new_y_max = y_max + shift_y
82
+ #
83
+ # # Clamp the new coordinates
84
+ # new_x_min = max(0, min(new_x_min, MAX_BBOX_DIMENSION))
85
+ # new_y_min = max(0, min(new_y_min, MAX_BBOX_DIMENSION))
86
+ # new_x_max = max(0, min(new_x_max, MAX_BBOX_DIMENSION))
87
+ # new_y_max = max(0, min(new_y_max, MAX_BBOX_DIMENSION))
88
+ #
89
+ # # Safety check
90
+ # if new_x_min > new_x_max: new_x_min = new_x_max
91
+ # if new_y_min > new_y_max: new_y_min = new_y_max
92
+ #
93
+ # return [new_x_min, new_y_min, new_x_max, new_y_max]
94
+ #
95
+ #
96
+ # def augment_sample(sample):
97
+ # """
98
+ # Generates a new sample by translating all bounding boxes.
99
+ # """
100
+ # shift_x = random.randint(-MAX_SHIFT, MAX_SHIFT)
101
+ # shift_y = random.randint(-MAX_SHIFT, MAX_SHIFT)
102
+ #
103
+ # new_sample = sample.copy()
104
+ #
105
+ # # Ensure tokens and labels are copied (they remain unchanged)
106
+ # new_sample["tokens"] = sample["tokens"]
107
+ # new_sample["labels"] = sample["labels"]
108
+ #
109
+ # # Translate all bounding boxes
110
+ # new_bboxes = [translate_bbox(bbox, shift_x, shift_y) for bbox in sample["bboxes"]]
111
+ # new_sample["bboxes"] = new_bboxes
112
+ #
113
+ # return new_sample
114
+ #
115
+ #
116
+ # def augment_and_save_dataset(input_json_path, output_json_path):
117
+ # """
118
+ # Loads preprocessed data, performs augmentation, and saves the result.
119
+ # """
120
+ # print(f"πŸ”„ Loading preprocessed data from {input_json_path} for augmentation...")
121
+ # with open(input_json_path, 'r', encoding="utf-8") as f:
122
+ # training_data = json.load(f)
123
+ #
124
+ # augmented_data = []
125
+ # original_count = len(training_data)
126
+ #
127
+ # print(f"πŸ”„ Starting augmentation (Factor: {AUGMENTATION_FACTOR}, {original_count} documents)...")
128
+ #
129
+ # for i, original_sample in enumerate(training_data):
130
+ # # 1. Add the original sample
131
+ # augmented_data.append(original_sample)
132
+ #
133
+ # # 2. Generate augmented samples
134
+ # for _ in range(AUGMENTATION_FACTOR):
135
+ # if "tokens" in original_sample and "labels" in original_sample and "bboxes" in original_sample:
136
+ # augmented_data.append(augment_sample(original_sample))
137
+ # else:
138
+ # print(f"Warning: Skipping augmentation for sample {i} due to missing keys.")
139
+ #
140
+ # augmented_count = len(augmented_data)
141
+ # print(f"Dataset Augmentation: Original samples: {original_count}, Total samples: {augmented_count}")
142
+ #
143
+ # # Save the augmented dataset
144
+ # with open(output_json_path, 'w', encoding="utf-8") as f:
145
+ # json.dump(augmented_data, f, indent=2, ensure_ascii=False)
146
+ #
147
+ # print(f"βœ… Augmented data saved to {output_json_path}")
148
+ # return output_json_path
149
+ #
150
+ #
151
+ # # -------------------------
152
+ # # Step 2: Dataset Class (Unchanged)
153
+ # # -------------------------
154
+ # class LayoutDataset(Dataset):
155
+ # def __init__(self, json_path, tokenizer, label2id, max_len=512):
156
+ # with open(json_path, "r", encoding="utf-8") as f:
157
+ # self.data = json.load(f)
158
+ # self.tokenizer = tokenizer
159
+ # self.label2id = label2id
160
+ # self.max_len = max_len
161
+ #
162
+ # def __len__(self):
163
+ # return len(self.data)
164
+ #
165
+ # def __getitem__(self, idx):
166
+ # item = self.data[idx]
167
+ # words, bboxes, labels = item["tokens"], item["bboxes"], item["labels"]
168
+ #
169
+ # # Tokenize
170
+ # encodings = self.tokenizer(
171
+ # words,
172
+ # boxes=bboxes,
173
+ # padding="max_length",
174
+ # truncation=True,
175
+ # max_length=self.max_len,
176
+ # return_offsets_mapping=True,
177
+ # return_tensors="pt"
178
+ # )
179
+ #
180
+ # # Align labels to word pieces
181
+ # word_ids = encodings.word_ids(batch_index=0)
182
+ # label_ids = []
183
+ # for word_id in word_ids:
184
+ # if word_id is None:
185
+ # label_ids.append(self.label2id["O"]) # [CLS], [SEP], padding
186
+ # else:
187
+ # label_ids.append(self.label2id.get(labels[word_id], self.label2id["O"]))
188
+ #
189
+ # encodings.pop("offset_mapping")
190
+ # encodings["labels"] = torch.tensor(label_ids)
191
+ #
192
+ # return {key: val.squeeze(0) for key, val in encodings.items()}
193
+ #
194
+ #
195
+ # # -------------------------
196
+ # # Step 3: Model Architecture (Unchanged)
197
+ # # -------------------------
198
+ # class LayoutLMv3CRF(nn.Module):
199
+ # def __init__(self, model_name, num_labels):
200
+ # super().__init__()
201
+ # self.layoutlm = LayoutLMv3Model.from_pretrained(model_name)
202
+ # # self.layoutlm = LayoutLMv3Model.from_pretrained("heerjtdev/edugenius")
203
+ # self.dropout = nn.Dropout(0.1)
204
+ # self.classifier = nn.Linear(self.layoutlm.config.hidden_size, num_labels)
205
+ # self.crf = CRF(num_labels)
206
+ #
207
+ # def forward(self, input_ids, bbox, attention_mask, labels=None):
208
+ # outputs = self.layoutlm(input_ids=input_ids, bbox=bbox, attention_mask=attention_mask)
209
+ # sequence_output = self.dropout(outputs.last_hidden_state)
210
+ # emissions = self.classifier(sequence_output)
211
+ #
212
+ # if labels is not None:
213
+ # # Training mode: calculate loss
214
+ # log_likelihood = self.crf(emissions, labels, mask=attention_mask.bool())
215
+ # return -log_likelihood.mean()
216
+ # else:
217
+ # # Inference mode: decode best path
218
+ # best_paths = self.crf.viterbi_decode(emissions, mask=attention_mask.bool())
219
+ # return best_paths
220
+ #
221
+ #
222
+ # # -------------------------
223
+ # # Step 4: Training + Evaluation (Unchanged)
224
+ # # -------------------------
225
+ # def train_one_epoch(model, dataloader, optimizer, device):
226
+ # model.train()
227
+ # total_loss = 0
228
+ # for batch in tqdm(dataloader, desc="Training"):
229
+ # batch = {k: v.to(device) for k, v in batch.items()}
230
+ # labels = batch.pop("labels")
231
+ # optimizer.zero_grad()
232
+ # loss = model(**batch, labels=labels)
233
+ # loss.backward()
234
+ # optimizer.step()
235
+ # total_loss += loss.item()
236
+ # return total_loss / len(dataloader)
237
+ #
238
+ #
239
+ # def evaluate(model, dataloader, device, id2label):
240
+ # model.eval()
241
+ # all_preds, all_labels = [], []
242
+ # with torch.no_grad():
243
+ # for batch in tqdm(dataloader, desc="Evaluating"):
244
+ # batch = {k: v.to(device) for k, v in batch.items()}
245
+ # labels = batch.pop("labels").cpu().numpy()
246
+ # preds = model(**batch)
247
+ # for p, l, mask in zip(preds, labels, batch["attention_mask"].cpu().numpy()):
248
+ # valid = mask == 1
249
+ # l = l[valid].tolist()
250
+ # all_labels.extend(l)
251
+ # all_preds.extend(p[:len(l)])
252
+ #
253
+ # # Exclude the "O" label and other special tokens if necessary, but using 'micro' average
254
+ # # on all valid tokens is typically fine for the initial evaluation.
255
+ # precision, recall, f1, _ = precision_recall_fscore_support(all_labels, all_preds, average="micro", zero_division=0)
256
+ # return precision, recall, f1
257
+ #
258
+ #
259
+ # # -------------------------
260
+ # # Step 5: Main Pipeline (Training) - MODIFIED LABELS + FILE PATH FIX
261
+ # # -------------------------
262
+ # def main(args):
263
+ # # LABELS UPDATED: Added SECTION_HEADING and PASSAGE
264
+ # labels = [
265
+ # "O",
266
+ # "B-QUESTION", "I-QUESTION",
267
+ # "B-OPTION", "I-OPTION",
268
+ # "B-ANSWER", "I-ANSWER",
269
+ # "B-SECTION_HEADING", "I-SECTION_HEADING",
270
+ # "B-PASSAGE", "I-PASSAGE"
271
+ # ]
272
+ # label2id = {l: i for i, l in enumerate(labels)}
273
+ # id2label = {i: l for l, i in label2id.items()}
274
+ #
275
+ # # --- FIX for FileNotFoundError: Use a temporary directory for intermediate files ---
276
+ # TEMP_DIR = "temp_intermediate_files"
277
+ # os.makedirs(TEMP_DIR, exist_ok=True)
278
+ # print(f"\n--- SETUP PHASE: Created temp directory: {TEMP_DIR} ---")
279
+ #
280
+ # # 1. Preprocess and save the initial training data
281
+ # print("\n--- START PHASE: PREPROCESSING ---")
282
+ #
283
+ # # FIX: Prepend the directory path to the file name
284
+ # initial_bio_json = os.path.join(TEMP_DIR, "training_data_bio_bboxes.json")
285
+ # preprocess_labelstudio(args.input, initial_bio_json)
286
+ #
287
+ # # 2. Augment the dataset with translated bboxes
288
+ # print("\n--- START PHASE: AUGMENTATION ---")
289
+ #
290
+ # # FIX: Prepend the directory path to the file name
291
+ # augmented_bio_json = os.path.join(TEMP_DIR, "augmented_training_data_bio_bboxes.json")
292
+ # final_data_path = augment_and_save_dataset(initial_bio_json, augmented_bio_json)
293
+ #
294
+ # # Clean up the intermediary file (optional)
295
+ # # import shutil
296
+ # # shutil.rmtree(TEMP_DIR)
297
+ #
298
+ # # 3. Load and split augmented dataset
299
+ # print("\n--- START PHASE: MODEL/DATASET SETUP ---")
300
+ # #MODEL_ID = "heerjtdev/edugenius"
301
+ # tokenizer = LayoutLMv3TokenizerFast.from_pretrained("microsoft/layoutlmv3-base")
302
+ # #tokenizer = LayoutLMv3TokenizerFast.from_pretrained(MODEL_ID)
303
+ #
304
+ # dataset = LayoutDataset(final_data_path, tokenizer, label2id, max_len=args.max_len)
305
+ # val_size = int(0.2 * len(dataset))
306
+ # train_size = len(dataset) - val_size
307
+ #
308
+ # # Use a fixed seed for reproducibility in split
309
+ # torch.manual_seed(42)
310
+ # train_dataset, val_dataset = random_split(dataset, [train_size, val_size])
311
+ # train_loader = DataLoader(train_dataset, batch_size=args.batch_size, shuffle=True)
312
+ # val_loader = DataLoader(val_dataset, batch_size=args.batch_size)
313
+ #
314
+ # # 4. Initialize and load model
315
+ # device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
316
+ # print(f"Using device: {device}")
317
+ # # Num_labels is based on the updated 'labels' list
318
+ # model = LayoutLMv3CRF("microsoft/layoutlmv3-base", num_labels=len(labels)).to(device)
319
+ # # model = LayoutLMv3CRF(MODEL_ID, num_labels=len(labels)).to(device)
320
+ # ckpt_path = "checkpoints/layoutlmv3_crf_passage.pth"
321
+ # os.makedirs("checkpoints", exist_ok=True)
322
+ # if os.path.exists(ckpt_path):
323
+ # # NOTE: Loading an old checkpoint will likely fail now because num_labels has changed,
324
+ # # unless the old checkpoint had the *exact* same number of labels.
325
+ # # It is recommended to start training from scratch.
326
+ # # print(f"πŸ”„ Loading checkpoint from {ckpt_path}")
327
+ # # model.load_state_dict(torch.load(ckpt_path, map_location=device))
328
+ # print(f"⚠️ Starting fresh training. Old checkpoint {ckpt_path} may be incompatible with new label count.")
329
+ #
330
+ # optimizer = AdamW(model.parameters(), lr=args.lr)
331
+ #
332
+ # # 5. Training loop
333
+ # for epoch in range(args.epochs):
334
+ # print(f"\n--- START PHASE: EPOCH {epoch + 1}/{args.epochs} TRAINING ---")
335
+ # avg_loss = train_one_epoch(model, train_loader, optimizer, device)
336
+ #
337
+ # print(f"\n--- START PHASE: EPOCH {epoch + 1}/{args.epochs} EVALUATION ---")
338
+ # precision, recall, f1 = evaluate(model, val_loader, device, id2label)
339
+ #
340
+ # print(
341
+ # f"Epoch {epoch + 1}/{args.epochs} | Loss: {avg_loss:.4f} | P: {precision:.3f} R: {recall:.3f} F1: {f1:.3f}")
342
+ # torch.save(model.state_dict(), ckpt_path)
343
+ # print(f"πŸ’Ύ Model saved at {ckpt_path}")
344
+ #
345
+ #
346
+ #
347
+ #
348
+ # # -------------------------
349
+ # # Step 7: Main Execution (Unchanged)
350
+ # # -------------------------
351
+ # if __name__ == "__main__":
352
+ # parser = argparse.ArgumentParser(description="LayoutLMv3 Fine-tuning and Inference Script.")
353
+ # parser.add_argument("--mode", type=str, required=True, choices=["train", "infer"],
354
+ # help="Select mode: 'train' or 'infer'")
355
+ # parser.add_argument("--input", type=str, help="Path to input file (Label Studio JSON for train, PDF for infer).")
356
+ # parser.add_argument("--batch_size", type=int, default=4)
357
+ # parser.add_argument("--epochs", type=int, default=5)
358
+ # parser.add_argument("--lr", type=float, default=5e-5)
359
+ # parser.add_argument("--max_len", type=int, default=512)
360
+ # args = parser.parse_args()
361
+ #
362
+ # if args.mode == "train":
363
+ # if not args.input:
364
+ # parser.error("--input is required for 'train' mode.")
365
+ # main(args)
366
+
367
 
368
  import json
369
  import argparse
 
372
  import torch
373
  import torch.nn as nn
374
  from torch.utils.data import Dataset, DataLoader, random_split
375
+ # Using LayoutLMv3TokenizerFast, LayoutLMv3Model
376
  from transformers import LayoutLMv3TokenizerFast, LayoutLMv3Model
377
+ from transformers.utils import cached_file
378
+ from safetensors.torch import load_file
379
  from TorchCRF import CRF
380
  from torch.optim import AdamW
381
  from tqdm import tqdm
382
  from sklearn.metrics import precision_recall_fscore_support
383
 
 
384
  # --- Configuration for Augmentation ---
385
  MAX_BBOX_DIMENSION = 999
386
  MAX_SHIFT = 30
387
  AUGMENTATION_FACTOR = 1
388
 
 
389
  # -------------------------------------
390
 
391
+ # --- Hugging Face Model ID ---
392
+ HF_MODEL_ID = "heerjtdev/edugenius"
393
+
394
+
395
+ # -----------------------------
396
+
397
 
398
  # -------------------------
399
  # Step 1: Preprocessing (Label Studio β†’ BIO + bboxes)
 
522
 
523
 
524
  # -------------------------
525
+ # Step 2: Dataset Class
526
  # -------------------------
527
  class LayoutDataset(Dataset):
528
  def __init__(self, json_path, tokenizer, label2id, max_len=512):
 
566
 
567
 
568
  # -------------------------
569
+ # Step 3: Model Architecture (PATCHED TO LOAD WEIGHTS CORRECTLY)
570
  # -------------------------
571
  class LayoutLMv3CRF(nn.Module):
572
+ def __init__(self, model_name, num_labels, device):
573
  super().__init__()
574
+
575
+ # 1. Initialize the LayoutLMv3 model using the base class
576
+ # We start by initializing from the base configuration to ensure all weights are present
577
+ self.layoutlm = LayoutLMv3Model.from_pretrained("microsoft/layoutlmv3-base")
578
+
579
+ # 2. Try to load the fine-tuned weights from the Hugging Face Hub/Cache
580
+ try:
581
+ # This resolves the path to the downloaded model.safetensors in the cache
582
+ # Assumes you have renamed your file on the Hugging Face Hub to 'model.safetensors'
583
+ weights_path = cached_file(model_name, "model.safetensors")
584
+ fine_tuned_weights = load_file(weights_path)
585
+
586
+ # 3. Strip the Mismatching Prefix (Assuming 'layoutlm.' prefix from a previous wrapper)
587
+ new_state_dict = {}
588
+ prefix_to_strip = "layoutlm."
589
+
590
+ for key, value in fine_tuned_weights.items():
591
+ if key.startswith(prefix_to_strip):
592
+ new_key = key[len(prefix_to_strip):]
593
+ new_state_dict[new_key] = value
594
+ else:
595
+ new_state_dict[key] = value
596
+
597
+ # 4. Load the fixed state dictionary into the LayoutLMv3Model
598
+ # strict=False allows us to ignore classifier/CRF weights not in LayoutLMv3Model
599
+ print("πŸ”„ Successfully loaded and stripped keys. Loading base LayoutLMv3 weights...")
600
+
601
+ # Load only the weights for the transformer body
602
+ missing_keys, unexpected_keys = self.layoutlm.load_state_dict(new_state_dict, strict=False)
603
+
604
+ print(f"Weights loading done: {len(missing_keys)} missing, {len(unexpected_keys)} unexpected keys.")
605
+
606
+ except Exception as e:
607
+ print(f"❌ Fine-tuned weights could not be loaded directly and mapped. Starting with random weights.")
608
+ print(f"Error: {e}")
609
+ # Fallback: Load the LayoutLMv3 component directly from the Hub ID (will result in random weights for layers)
610
+ self.layoutlm = LayoutLMv3Model.from_pretrained(model_name)
611
+
612
+ # 5. Initialize the new heads (CRF layer and Classifier)
613
  self.dropout = nn.Dropout(0.1)
614
  self.classifier = nn.Linear(self.layoutlm.config.hidden_size, num_labels)
615
  self.crf = CRF(num_labels)
 
630
 
631
 
632
  # -------------------------
633
+ # Step 4: Training + Evaluation
634
  # -------------------------
635
  def train_one_epoch(model, dataloader, optimizer, device):
636
  model.train()
 
653
  for batch in tqdm(dataloader, desc="Evaluating"):
654
  batch = {k: v.to(device) for k, v in batch.items()}
655
  labels = batch.pop("labels").cpu().numpy()
656
+ # The model returns a list of lists of predicted labels in inference mode
657
  preds = model(**batch)
658
  for p, l, mask in zip(preds, labels, batch["attention_mask"].cpu().numpy()):
659
  valid = mask == 1
660
  l = l[valid].tolist()
661
  all_labels.extend(l)
662
+ # Ensure pred length matches label length for the unmasked tokens
663
  all_preds.extend(p[:len(l)])
664
 
665
+ # Exclude the "O" label and other special tokens if necessary, but using 'micro' average
 
666
  precision, recall, f1, _ = precision_recall_fscore_support(all_labels, all_preds, average="micro", zero_division=0)
667
  return precision, recall, f1
668
 
669
 
670
  # -------------------------
671
+ # Step 5: Main Pipeline (Training) - MODIFIED MODEL/TOKENIZER LOADING
672
  # -------------------------
673
  def main(args):
674
  # LABELS UPDATED: Added SECTION_HEADING and PASSAGE
 
683
  label2id = {l: i for i, l in enumerate(labels)}
684
  id2label = {i: l for l, i in label2id.items()}
685
 
686
+ # --- SETUP: Use a temporary directory for intermediate files ---
687
  TEMP_DIR = "temp_intermediate_files"
688
  os.makedirs(TEMP_DIR, exist_ok=True)
689
  print(f"\n--- SETUP PHASE: Created temp directory: {TEMP_DIR} ---")
690
 
691
+ # 1. Preprocess
692
  print("\n--- START PHASE: PREPROCESSING ---")
 
 
693
  initial_bio_json = os.path.join(TEMP_DIR, "training_data_bio_bboxes.json")
694
  preprocess_labelstudio(args.input, initial_bio_json)
695
 
696
+ # 2. Augment
697
  print("\n--- START PHASE: AUGMENTATION ---")
 
 
698
  augmented_bio_json = os.path.join(TEMP_DIR, "augmented_training_data_bio_bboxes.json")
699
  final_data_path = augment_and_save_dataset(initial_bio_json, augmented_bio_json)
700
 
 
 
 
 
701
  # 3. Load and split augmented dataset
702
  print("\n--- START PHASE: MODEL/DATASET SETUP ---")
703
+
704
+ # Load tokenizer from the specified Hugging Face ID
705
+ tokenizer = LayoutLMv3TokenizerFast.from_pretrained(HF_MODEL_ID)
706
 
707
  dataset = LayoutDataset(final_data_path, tokenizer, label2id, max_len=args.max_len)
708
  val_size = int(0.2 * len(dataset))
 
717
  # 4. Initialize and load model
718
  device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
719
  print(f"Using device: {device}")
720
+
721
+ # Pass the Hugging Face ID and device to the custom model wrapper
722
+ model = LayoutLMv3CRF(HF_MODEL_ID, num_labels=len(labels), device=device).to(device)
723
+
724
  ckpt_path = "checkpoints/layoutlmv3_crf_passage.pth"
725
  os.makedirs("checkpoints", exist_ok=True)
726
  if os.path.exists(ckpt_path):
 
 
 
 
 
727
  print(f"⚠️ Starting fresh training. Old checkpoint {ckpt_path} may be incompatible with new label count.")
728
 
729
  optimizer = AdamW(model.parameters(), lr=args.lr)
 
742
  print(f"πŸ’Ύ Model saved at {ckpt_path}")
743
 
744
 
 
 
745
  # -------------------------
746
+ # Step 7: Main Execution
747
  # -------------------------
748
  if __name__ == "__main__":
749
  parser = argparse.ArgumentParser(description="LayoutLMv3 Fine-tuning and Inference Script.")
 
759
  if args.mode == "train":
760
  if not args.input:
761
  parser.error("--input is required for 'train' mode.")
762
+ main(args)