Update app.py
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app.py
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| 2 |
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+
import fitz # PyMuPDF
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| 6 |
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import numpy as np
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| 7 |
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import cv2
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| 8 |
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import torch
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| 9 |
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import torch.serialization
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import os
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import time # Import for timing
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from typing import Optional, Tuple, List, Dict, Any
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from ultralytics import YOLO
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import logging
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import gradio as gr
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import shutil
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import tempfile
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import io
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# ============================================================================
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| 21 |
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# --- Global Patches and Setup ---
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| 22 |
+
# ============================================================================
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| 23 |
+
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| 24 |
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# Patch torch.load to prevent weights_only error with older models
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| 25 |
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_original_torch_load = torch.load
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| 26 |
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def patched_torch_load(*args, **kwargs):
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| 27 |
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kwargs["weights_only"] = False
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return _original_torch_load(*args, **kwargs)
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| 29 |
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torch.load = patched_torch_load
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| 30 |
+
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| 31 |
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logging.basicConfig(level=logging.WARNING)
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| 32 |
+
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| 33 |
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# ============================================================================
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| 34 |
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# --- CONFIGURATION AND CONSTANTS ---
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| 35 |
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# ============================================================================
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| 36 |
+
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| 37 |
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WEIGHTS_PATH = 'best.pt'
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| 38 |
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SCALE_FACTOR = 2.0 # Used for page rendering and coordinate scaling
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| 39 |
+
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| 40 |
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# Detection parameters
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| 41 |
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CONF_THRESHOLD = 0.2
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| 42 |
+
TARGET_CLASSES = ['figure', 'equation']
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| 43 |
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IOU_MERGE_THRESHOLD = 0.4
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IOA_SUPPRESSION_THRESHOLD = 0.7
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+
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| 46 |
+
# Global counters (Reset per run)
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| 47 |
+
GLOBAL_FIGURE_COUNT = 0
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GLOBAL_EQUATION_COUNT = 0
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| 49 |
+
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| 50 |
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# ============================================================================
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# --- BOX COMBINATION LOGIC ---
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| 52 |
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# ============================================================================
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| 53 |
+
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| 54 |
+
def calculate_iou(box1, box2):
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| 55 |
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x1_a, y1_a, x2_a, y2_a = box1
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x1_b, y1_b, x2_b, y2_b = box2
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x_left = max(x1_a, x1_b)
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| 58 |
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y_top = max(y1_a, y1_b)
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x_right = min(x2_a, x2_b)
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y_bottom = min(y2_a, y2_b)
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intersection_area = max(0, x_right - x_left) * max(0, y_bottom - y_top)
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box_a_area = (x2_a - x1_a) * (y2_a - y1_a)
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box_b_area = (x2_b - x1_b) * (y2_b - y1_b)
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union_area = float(box_a_area + box_b_area - intersection_area)
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return intersection_area / union_area if union_area > 0 else 0
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+
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def filter_nested_boxes(detections, ioa_threshold=0.80):
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if not detections: return []
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for d in detections:
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x1, y1, x2, y2 = d['coords']
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d['area'] = (x2 - x1) * (y2 - y1)
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detections.sort(key=lambda x: x['area'], reverse=True)
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keep_indices = []
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is_suppressed = [False] * len(detections)
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for i in range(len(detections)):
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if is_suppressed[i]: continue
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keep_indices.append(i)
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box_a = detections[i]['coords']
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| 80 |
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for j in range(i + 1, len(detections)):
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if is_suppressed[j]: continue
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box_b = detections[j]['coords']
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x_left = max(box_a[0], box_b[0])
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y_top = max(box_a[1], box_b[1])
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x_right = min(box_a[2], box_b[2])
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y_bottom = min(box_a[3], box_b[3])
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intersection = max(0, x_right - x_left) * max(0, y_bottom - y_top)
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area_b = detections[j]['area']
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if area_b > 0 and intersection / area_b > ioa_threshold:
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is_suppressed[j] = True
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return [detections[i] for i in keep_indices]
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+
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def merge_overlapping_boxes(detections, iou_threshold):
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if not detections: return []
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detections.sort(key=lambda d: d['conf'], reverse=True)
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merged_detections = []
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is_merged = [False] * len(detections)
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| 99 |
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for i in range(len(detections)):
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| 100 |
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if is_merged[i]: continue
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| 101 |
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current_box = detections[i]['coords']
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| 102 |
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current_class = detections[i]['class']
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merged_x1, merged_y1, merged_x2, merged_y2 = current_box
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for j in range(i + 1, len(detections)):
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if is_merged[j] or detections[j]['class'] != current_class: continue
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| 106 |
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other_box = detections[j]['coords']
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| 107 |
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iou = calculate_iou(current_box, other_box)
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| 108 |
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if iou > iou_threshold:
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| 109 |
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merged_x1 = min(merged_x1, other_box[0])
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| 110 |
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merged_y1 = min(merged_y1, other_box[1])
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| 111 |
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merged_x2 = max(merged_x2, other_box[2])
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| 112 |
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merged_y2 = max(merged_y2, other_box[3])
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| 113 |
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is_merged[j] = True
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| 114 |
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merged_detections.append({
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'coords': (merged_x1, merged_y1, merged_x2, merged_y2),
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| 116 |
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'y1': merged_y1, 'class': current_class, 'conf': detections[i]['conf']
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| 117 |
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})
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| 118 |
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return merged_detections
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| 119 |
+
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| 120 |
+
# ============================================================================
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| 121 |
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# --- UTILITY FUNCTIONS ---
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| 122 |
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# ============================================================================
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| 123 |
+
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| 124 |
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def pixmap_to_numpy(pix: fitz.Pixmap) -> np.ndarray:
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| 125 |
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"""Converts a PyMuPDF Pixmap to a NumPy array for OpenCV/YOLO."""
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| 126 |
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# This function is retained as it's required to convert PDF page to image for YOLO input.
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| 127 |
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img = np.frombuffer(pix.samples, dtype=np.uint8).reshape(
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| 128 |
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(pix.h, pix.w, pix.n)
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| 129 |
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)
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| 130 |
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if pix.n == 4:
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| 131 |
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img = cv2.cvtColor(img, cv2.COLOR_RGBA2RGB)
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| 132 |
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elif pix.n == 1:
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| 133 |
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img = cv2.cvtColor(img, cv2.COLOR_GRAY2RGB)
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| 134 |
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return img
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| 135 |
+
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| 136 |
+
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| 137 |
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def run_yolo_detection_and_count(
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| 138 |
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image: np.ndarray, model: YOLO, page_num: int
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| 139 |
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) -> Tuple[int, int]: # Removed equation_results list from return
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| 140 |
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"""
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| 141 |
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Runs YOLO inference, applies NMS/filtering, and updates global counters.
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| 142 |
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Returns page counts only.
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| 143 |
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"""
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| 144 |
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global GLOBAL_FIGURE_COUNT, GLOBAL_EQUATION_COUNT
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| 145 |
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| 146 |
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yolo_detections = []
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| 147 |
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page_equations = 0
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| 148 |
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page_figures = 0
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| 149 |
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| 150 |
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try:
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| 151 |
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results = model.predict(image, conf=CONF_THRESHOLD, verbose=False)
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| 152 |
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| 153 |
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if results and results[0].boxes:
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| 154 |
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for box in results[0].boxes.data.tolist():
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| 155 |
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x1, y1, x2, y2, conf, cls_id = box
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| 156 |
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cls_name = model.names[int(cls_id)]
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| 157 |
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| 158 |
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if cls_name in TARGET_CLASSES:
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| 159 |
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yolo_detections.append({
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| 160 |
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'coords': (x1, y1, x2, y2),
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| 161 |
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'class': cls_name,
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| 162 |
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'conf': conf
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| 163 |
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})
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| 164 |
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except Exception as e:
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| 165 |
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logging.error(f"YOLO inference failed on page {page_num}: {e}")
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| 166 |
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return 0, 0
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| 167 |
+
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| 168 |
+
# Apply NMS/Merging/Filtering
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| 169 |
+
merged_detections = merge_overlapping_boxes(yolo_detections, IOU_MERGE_THRESHOLD)
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| 170 |
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final_detections = filter_nested_boxes(merged_detections, IOA_SUPPRESSION_THRESHOLD)
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| 171 |
+
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| 172 |
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# Update Global Counters
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| 173 |
+
for det in final_detections:
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| 174 |
+
if det['class'] == 'figure':
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| 175 |
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GLOBAL_FIGURE_COUNT += 1
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| 176 |
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page_figures += 1
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| 177 |
+
elif det['class'] == 'equation':
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| 178 |
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GLOBAL_EQUATION_COUNT += 1
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| 179 |
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page_equations += 1
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| 180 |
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| 181 |
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logging.warning(f" -> Page {page_num}: EQs={page_equations}, Figs={page_figures}")
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| 182 |
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return page_equations, page_figures
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| 183 |
+
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| 184 |
+
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| 185 |
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# ============================================================================
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| 186 |
+
# --- MAIN DOCUMENT PROCESSING FUNCTION (Optimized) ---
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| 187 |
+
# ============================================================================
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| 188 |
+
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| 189 |
+
def run_single_pdf_preprocessing(pdf_path: str) -> Tuple[int, int, int, str, float, List[str]]:
|
| 190 |
+
"""
|
| 191 |
+
Runs the pipeline, returns counts, report, total time, and an empty list
|
| 192 |
+
(maintaining the expected return signature for Gradio but with None for gallery).
|
| 193 |
+
"""
|
| 194 |
+
global GLOBAL_FIGURE_COUNT, GLOBAL_EQUATION_COUNT
|
| 195 |
+
start_time = time.time()
|
| 196 |
+
log_messages = []
|
| 197 |
+
|
| 198 |
+
# Reset globals
|
| 199 |
+
GLOBAL_FIGURE_COUNT = 0
|
| 200 |
+
GLOBAL_EQUATION_COUNT = 0
|
| 201 |
+
|
| 202 |
+
# 1. Validation and Model Loading
|
| 203 |
+
t0 = time.time()
|
| 204 |
+
if not os.path.exists(pdf_path):
|
| 205 |
+
report = f"β FATAL ERROR: Input PDF not found at {pdf_path}."
|
| 206 |
+
return 0, 0, 0, report, time.time() - start_time, []
|
| 207 |
|
| 208 |
+
try:
|
| 209 |
+
model = YOLO(WEIGHTS_PATH)
|
| 210 |
+
logging.warning(f"β
Loaded YOLO model from: {WEIGHTS_PATH}")
|
| 211 |
+
except Exception as e:
|
| 212 |
+
report = f"β ERROR loading YOLO model: {e}\n(Ensure 'best.pt' is available and valid.)"
|
| 213 |
+
return 0, 0, 0, report, time.time() - start_time, []
|
| 214 |
+
t1 = time.time()
|
| 215 |
+
log_messages.append(f"Model Loading Time: {t1-t0:.4f}s")
|
| 216 |
|
| 217 |
+
# 2. PDF Loading
|
| 218 |
+
t2 = time.time()
|
| 219 |
+
try:
|
| 220 |
+
doc = fitz.open(pdf_path)
|
| 221 |
+
total_pages = doc.page_count
|
| 222 |
+
logging.warning(f"β
Opened PDF with {doc.page_count} pages")
|
| 223 |
+
except Exception as e:
|
| 224 |
+
report = f"β ERROR loading PDF file: {e}"
|
| 225 |
+
return 0, 0, 0, report, time.time() - start_time, []
|
| 226 |
+
t3 = time.time()
|
| 227 |
+
log_messages.append(f"PDF Initialization Time: {t3-t2:.4f}s")
|
| 228 |
+
|
| 229 |
+
mat = fitz.Matrix(SCALE_FACTOR, SCALE_FACTOR)
|
| 230 |
|
| 231 |
+
# 3. Page Processing and Detection Loop
|
| 232 |
+
t4 = time.time()
|
| 233 |
+
for page_num_0_based in range(doc.page_count):
|
| 234 |
+
page_start_time = time.time()
|
| 235 |
+
fitz_page = doc.load_page(page_num_0_based)
|
| 236 |
+
page_num = page_num_0_based + 1
|
| 237 |
+
|
| 238 |
+
# Render page to image for YOLO
|
| 239 |
+
try:
|
| 240 |
+
pix_start = time.time()
|
| 241 |
+
pix = fitz_page.get_pixmap(matrix=mat)
|
| 242 |
+
original_img = pixmap_to_numpy(pix)
|
| 243 |
+
pix_time = time.time() - pix_start
|
| 244 |
+
except Exception as e:
|
| 245 |
+
logging.error(f"Error converting page {page_num} to image: {e}. Skipping.")
|
| 246 |
+
continue
|
| 247 |
|
| 248 |
+
# Core Detection
|
| 249 |
+
detect_start = time.time()
|
| 250 |
+
run_yolo_detection_and_count(original_img, model, page_num)
|
| 251 |
+
detect_time = time.time() - detect_start
|
| 252 |
|
| 253 |
+
page_total_time = time.time() - page_start_time
|
| 254 |
+
log_messages.append(f"Page {page_num} Time: Total={page_total_time:.4f}s (Render={pix_time:.4f}s, Detect={detect_time:.4f}s)")
|
| 255 |
|
| 256 |
+
doc.close()
|
| 257 |
+
t5 = time.time()
|
| 258 |
+
detection_loop_time = t5 - t4
|
| 259 |
+
log_messages.append(f"Total Detection Loop Time ({total_pages} pages): {detection_loop_time:.4f}s")
|
| 260 |
|
| 261 |
+
# 4. Final Report Generation
|
| 262 |
+
total_execution_time = t5 - start_time
|
| 263 |
|
| 264 |
+
report = (
|
| 265 |
+
f"β
**YOLO Counting Complete!**\n\n"
|
| 266 |
+
f"**1) Total Pages Detected in PDF:** **{total_pages}**\n"
|
| 267 |
+
f"**2) Total Equations Detected:** **{GLOBAL_EQUATION_COUNT}**\n"
|
| 268 |
+
f"**3) Total Figures Detected:** **{GLOBAL_FIGURE_COUNT}**\n"
|
| 269 |
+
f"---\n"
|
| 270 |
+
f"**4) Total Execution Time:** **{total_execution_time:.4f}s**\n"
|
| 271 |
+
f"### Detailed Step Timing\n"
|
| 272 |
+
f"```\n"
|
| 273 |
+
+ "\n".join(log_messages) +
|
| 274 |
+
f"\n```"
|
| 275 |
+
)
|
| 276 |
+
|
| 277 |
+
# Return total_execution_time and an empty list for the gallery output
|
| 278 |
+
return total_pages, GLOBAL_EQUATION_COUNT, GLOBAL_FIGURE_COUNT, report, total_execution_time, []
|
| 279 |
+
|
| 280 |
+
|
| 281 |
+
# ============================================================================
|
| 282 |
+
# --- GRADIO INTERFACE FUNCTION (Updated) ---
|
| 283 |
+
# ============================================================================
|
| 284 |
+
|
| 285 |
+
# NOTE: The return signature has changed. We removed 'temp_output_dir' as it's no longer used.
|
| 286 |
+
def gradio_process_pdf(pdf_file) -> Tuple[str, str, str, str, List[str]]:
|
| 287 |
+
"""
|
| 288 |
+
Gradio wrapper function to handle file upload and return results (no image handling).
|
| 289 |
+
"""
|
| 290 |
+
if pdf_file is None:
|
| 291 |
+
return "N/A", "N/A", "N/A", "Please upload a PDF file.", []
|
| 292 |
|
| 293 |
+
pdf_path = pdf_file.name
|
| 294 |
+
|
| 295 |
+
try:
|
| 296 |
+
# Run the core logic
|
| 297 |
+
# Note the change: temp_output_dir is removed, and total_time is returned
|
| 298 |
+
num_pages, num_equations, num_figures, report, total_time, _ = run_single_pdf_preprocessing(
|
| 299 |
+
pdf_path
|
| 300 |
+
)
|
| 301 |
|
| 302 |
+
# Return results (the last item is an empty list for the now-empty gallery)
|
| 303 |
+
return str(num_pages), str(num_equations), str(num_figures), report, []
|
| 304 |
|
| 305 |
+
except Exception as e:
|
| 306 |
+
error_msg = f"An unexpected error occurred: {e}"
|
| 307 |
+
logging.error(error_msg, exc_info=True)
|
| 308 |
+
return "Error", "Error", "Error", error_msg, []
|
| 309 |
|
| 310 |
|
| 311 |
+
# ============================================================================
|
| 312 |
+
# --- GRADIO INTERFACE DEFINITION (Updated) ---
|
| 313 |
+
# ============================================================================
|
| 314 |
|
| 315 |
+
if __name__ == "__main__":
|
| 316 |
|
| 317 |
+
if not os.path.exists(WEIGHTS_PATH):
|
| 318 |
+
logging.error(f"β FATAL ERROR: YOLO weight file '{WEIGHTS_PATH}' not found. Cannot run live inference.")
|
| 319 |
|
| 320 |
+
input_file = gr.File(label="Upload PDF Document", type="filepath", file_types=[".pdf"])
|
| 321 |
|
| 322 |
+
# Outputs
|
| 323 |
+
output_pages = gr.Textbox(label="Total Pages in PDF", interactive=False)
|
| 324 |
+
output_equations = gr.Textbox(label="Total Equations Detected", interactive=False)
|
| 325 |
+
output_figures = gr.Textbox(label="Total Figures Detected", interactive=False)
|
| 326 |
+
output_report = gr.Markdown(label="Processing Summary and Timing")
|
| 327 |
|
| 328 |
+
# Gradio Gallery is retained but will receive an empty list []
|
| 329 |
+
output_gallery = gr.Gallery(
|
| 330 |
+
label="Detected Equations (Disabled for Speed)",
|
| 331 |
+
columns=5,
|
| 332 |
+
height="auto",
|
| 333 |
+
object_fit="contain",
|
| 334 |
+
allow_preview=False # Disable preview since it's empty
|
| 335 |
+
)
|
| 336 |
|
| 337 |
+
interface = gr.Interface(
|
| 338 |
+
fn=gradio_process_pdf,
|
| 339 |
+
inputs=input_file,
|
| 340 |
+
# The number of outputs remains 5 (3 textboxes, 1 markdown, 1 gallery)
|
| 341 |
+
outputs=[output_pages, output_equations, output_figures, output_report, output_gallery],
|
| 342 |
+
title="π Optimized YOLO Counting with Timing",
|
| 343 |
+
description=(
|
| 344 |
+
"Upload a PDF to run YOLO detection. Image cropping is disabled for maximum speed. "
|
| 345 |
+
"Timing for each step is included in the summary report."
|
| 346 |
+
),
|
| 347 |
+
)
|
| 348 |
+
|
| 349 |
+
print("\nStarting Gradio application...")
|
| 350 |
+
interface.launch(inbrowser=True)
|
| 351 |
|
| 352 |
|
| 353 |
|