timeout command removed from docker file

Dockerfile

@@ -31,9 +31,15 @@ RUN conda tos accept --override-channels --channel https://repo.anaconda.com/pkg
     conda config --add channels bioconda && \
     conda config --set channel_priority flexible
 
-# Install AMBER tools and PyMOL with proper conda syntax
-RUN conda install conda-forge::ambertools -y --timeout 300 && \
-    conda install conda-forge::pymol-open-source -y --timeout 300
+# Install mamba for faster package installation
+RUN conda install -n base -c conda-forge mamba -y
+
+# Install AMBER tools and PyMOL using mamba (much faster than conda)
+RUN mamba install conda-forge::ambertools -y && \
+    mamba install conda-forge::pymol-open-source -y
+
+# Clean up conda/mamba cache to reduce image size
+RUN conda clean -afy
 
 # Install Python packages via pip
 RUN pip install --no-cache-dir \
@@ -63,4 +69,4 @@ ENV PYTHONPATH="${PYTHONPATH}:/AmberFlow/python"
 EXPOSE 7860
 
 # Run the application
-CMD ["python", "start_web_server.py"]
+CMD ["python", "start_web_server.py"]