r""" Chest X-ray few-shot semantic segmentation dataset """ import os import glob from torch.utils.data import Dataset import torch.nn.functional as F import torch import PIL.Image as Image import numpy as np class DatasetLung(Dataset): def __init__(self, datapath, fold, transform, split, shot=1, num_val=600): self.benchmark = 'lung' self.shot = shot self.split = split self.num_val = num_val self.base_path = os.path.join(datapath) self.img_path = os.path.join(self.base_path, 'CXR_png') self.ann_path = os.path.join(self.base_path, 'masks') self.categories = ['1'] self.class_ids = range(0, 1) self.img_metadata_classwise, self.num_images = self.build_img_metadata_classwise() self.transform = transform def __len__(self): return self.num_images if self.split != 'val' else self.num_val def __getitem__(self, idx): query_name, support_names, class_sample = self.sample_episode(idx) query_img, query_mask, support_imgs, support_masks = self.load_frame(query_name, support_names) query_img = self.transform(query_img) query_mask = F.interpolate(query_mask.unsqueeze(0).unsqueeze(0).float(), query_img.size()[-2:], mode='nearest').squeeze() support_imgs = torch.stack([self.transform(support_img) for support_img in support_imgs]) support_masks_tmp = [] for smask in support_masks: smask = F.interpolate(smask.unsqueeze(0).unsqueeze(0).float(), support_imgs.size()[-2:], mode='nearest').squeeze() support_masks_tmp.append(smask) support_masks = torch.stack(support_masks_tmp) batch = {'query_img': query_img, 'query_mask': query_mask, 'query_name': query_name, 'support_imgs': support_imgs, 'support_masks': support_masks, 'class_id': torch.tensor(class_sample), 'support_names': support_names, 'support_set': [support_imgs, support_masks], 'support_classes': torch.tensor([class_sample]) } return batch def load_frame(self, query_name, support_names): query_mask = self.read_mask(query_name) support_masks = [self.read_mask(name) for name in support_names] query_id = query_name[:-9] + '.png' query_img = Image.open(os.path.join(self.img_path, os.path.basename(query_id))).convert('RGB') support_ids = [os.path.basename(name)[:-9] + '.png' for name in support_names] support_names = [os.path.join(self.img_path, sid) for sid in support_ids] support_imgs = [Image.open(name).convert('RGB') for name in support_names] return query_img, query_mask, support_imgs, support_masks def read_mask(self, img_name): mask = torch.tensor(np.array(Image.open(img_name).convert('L'))) mask[mask < 128] = 0 mask[mask >= 128] = 1 return mask def sample_episode(self, idx): class_id = idx % len(self.class_ids) class_sample = self.categories[class_id] query_name = np.random.choice(self.img_metadata_classwise[class_sample], 1, replace=False)[0] support_names = [] while True: # keep sampling support set if query == support support_name = np.random.choice(self.img_metadata_classwise[class_sample], 1, replace=False)[0] if query_name != support_name: support_names.append(support_name) if len(support_names) == self.shot: break return query_name, support_names, class_id def build_img_metadata(self): img_metadata = [] for cat in self.categories: os.path.join(self.base_path, cat) img_paths = sorted([path for path in glob.glob('%s/*' % os.path.join(self.img_path, cat))]) for img_path in img_paths: if os.path.basename(img_path).split('.')[1] == 'png': img_metadata.append(img_path) return img_metadata def build_img_metadata_classwise(self): num_images=0 img_metadata_classwise = {} for cat in self.categories: img_metadata_classwise[cat] = [] for cat in self.categories: img_paths = sorted([path for path in glob.glob('%s/*' % self.ann_path)]) for img_path in img_paths: if os.path.basename(img_path).split('.')[1] == 'png': img_metadata_classwise[cat] += [img_path] num_images+=1 return img_metadata_classwise, num_images