import gradio as gr import torch import numpy as np from PIL import Image import torchvision.transforms as T import segmentation_models_pytorch as smp # Device setup device = torch.device("cuda" if torch.cuda.is_available() else "cpu") # Load model architecture model = smp.Unet( encoder_name="resnet34", encoder_weights="imagenet", in_channels=1, # Grayscale input classes=1 # Binary output ).to(device) # Load trained weights model.load_state_dict(torch.load("./trained-models/unet_fibril_seg_model.pth", map_location=device)) model.eval() # Image preprocessing transform = T.Compose([ T.Resize((512, 512)), T.ToTensor(), T.Normalize(mean=(0.5,), std=(0.5,)) ]) # Inference function def segment_fibrils(image): image = image.convert("L") # Grayscale input_tensor = transform(image).unsqueeze(0).to(device) with torch.no_grad(): output = model(input_tensor) output = torch.sigmoid(output).squeeze().cpu().numpy() # Postprocess mask output_mask = (output > 0.5).astype(np.uint8) * 255 return Image.fromarray(output_mask) # Launch Gradio app demo = gr.Interface( fn=segment_fibrils, inputs=gr.Image(type="pil", label="Upload Fibril Image"), outputs=gr.Image(type="pil", label="Predicted Segmentation Mask"), title="Fibril Segmentation Encoder (ResNet34) and Decoder (UNet)", description="Upload a grayscale fibril image to get the segmentation mask." ) demo.launch(server_name="0.0.0.0", server_port=7860, share=True)