Update app.py
Browse files
app.py
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@@ -3,59 +3,54 @@ from tensorflow import keras
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import numpy as np
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from PIL import Image
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import cv2
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# Load model
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model = keras.models.load_model('my_model (2).h5')
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# Class labels
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CLASS_NAMES = ['Necrotic Tumor', 'Non-Tumor', 'Viable Tumor']
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def make_gradcam_heatmap(img_array, model
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[model.
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)
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with
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conv_outputs, predictions = grad_model(img_array)
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pred_index =
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class_channel = predictions[:, pred_index]
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grads = tape.gradient(class_channel, conv_outputs)
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pooled_grads =
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conv_outputs = conv_outputs[0]
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heatmap = conv_outputs @ pooled_grads[...,
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heatmap =
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heatmap =
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return heatmap
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def predict(input_image):
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# Preprocess
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img = Image.fromarray(input_image).convert('RGB')
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img = img.resize((224, 224))
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img_array = np.array(img) / 255.0
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img_array = np.expand_dims(img_array, axis=0)
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# Predict
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predictions = model.predict(img_array)
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pred_class = CLASS_NAMES[np.argmax(predictions[0])]
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confidence = float(np.max(predictions[0])) * 100
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# Create result text
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result_text = f"Prediction: {pred_class}\nConfidence: {confidence:.2f}%\n\n"
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result_text += "All Probabilities:\n"
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for i, name in enumerate(CLASS_NAMES):
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result_text += f" {name}: {predictions[0][i]*100:.2f}%\n"
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# Generate Grad-CAM
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try:
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heatmap = make_gradcam_heatmap(img_array, model)
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heatmap = cv2.resize(heatmap, (224, 224))
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heatmap = np.uint8(255 * heatmap)
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heatmap_colored = cv2.applyColorMap(heatmap, cv2.COLORMAP_JET)
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original = np.array(img)
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superimposed = cv2.addWeighted(original, 0.6, heatmap_colored, 0.4, 0)
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output_image = superimposed
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@@ -76,19 +71,4 @@ demo = gr.Interface(
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description="Upload an H&E stained histopathology image to classify as Non-Tumor, Viable Tumor, or Necrotic Tumor."
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)
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demo.launch()
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```
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4. Click **Commit new file to main**
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---
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## Also update `requirements.txt`
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You need to add `opencv-python`. Edit your `requirements.txt` to:
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```
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tensorflow
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gradio
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numpy
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opencv-python-headless
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pillow
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import numpy as np
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from PIL import Image
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import cv2
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import tensorflow as tf
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model = keras.models.load_model('my_model (2).h5')
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CLASS_NAMES = ['Necrotic Tumor', 'Non-Tumor', 'Viable Tumor']
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def make_gradcam_heatmap(img_array, model):
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last_conv_layer = model.get_layer('last_conv_layer')
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grad_model = tf.keras.models.Model(
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[model.inputs],
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[last_conv_layer.output, model.output]
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)
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with tf.GradientTape() as tape:
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conv_outputs, predictions = grad_model(img_array)
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pred_index = tf.argmax(predictions[0])
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class_channel = predictions[:, pred_index]
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grads = tape.gradient(class_channel, conv_outputs)
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pooled_grads = tf.reduce_mean(grads, axis=(0, 1, 2))
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conv_outputs = conv_outputs[0]
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heatmap = conv_outputs @ pooled_grads[..., tf.newaxis]
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heatmap = tf.squeeze(heatmap)
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heatmap = tf.maximum(heatmap, 0) / (tf.math.reduce_max(heatmap) + 1e-8)
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return heatmap.numpy()
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def predict(input_image):
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img = Image.fromarray(input_image).convert('RGB')
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img = img.resize((224, 224))
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img_array = np.array(img) / 255.0
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img_array = np.expand_dims(img_array, axis=0)
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predictions = model.predict(img_array)
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pred_class = CLASS_NAMES[np.argmax(predictions[0])]
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confidence = float(np.max(predictions[0])) * 100
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result_text = f"Prediction: {pred_class}\nConfidence: {confidence:.2f}%\n\n"
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result_text += "All Probabilities:\n"
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for i, name in enumerate(CLASS_NAMES):
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result_text += f" {name}: {predictions[0][i]*100:.2f}%\n"
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try:
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heatmap = make_gradcam_heatmap(img_array, model)
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heatmap = cv2.resize(heatmap, (224, 224))
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heatmap = np.uint8(255 * heatmap)
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heatmap_colored = cv2.applyColorMap(heatmap, cv2.COLORMAP_JET)
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original = np.array(img)
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superimposed = cv2.addWeighted(original, 0.6, heatmap_colored, 0.4, 0)
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output_image = superimposed
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description="Upload an H&E stained histopathology image to classify as Non-Tumor, Viable Tumor, or Necrotic Tumor."
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)
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demo.launch()
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