cardioai-api / app.py
hssling's picture
Strengthen ECG prompt to avoid generic refusal outputs
5dd7eca
raw
history blame
5.07 kB
import gradio as gr
import torch
from transformers import AutoProcessor, Qwen2VLForConditionalGeneration, BitsAndBytesConfig
from peft import PeftModel
from PIL import Image
import json
import os
DEFAULT_MODEL_ID = "Qwen/Qwen2-VL-2B-Instruct"
DEFAULT_ADAPTER_ID = "hssling/cardioai-adapter"
CONFIG_PATH = "model_config.json"
def load_runtime_config():
config = {
"base_model": os.environ.get("BASE_MODEL_ID", DEFAULT_MODEL_ID),
"adapter_repo": os.environ.get("ADAPTER_REPO_ID", DEFAULT_ADAPTER_ID),
"adapter_revision": os.environ.get("ADAPTER_REVISION", "main")
}
if os.path.exists(CONFIG_PATH):
try:
with open(CONFIG_PATH, "r", encoding="utf-8") as f:
disk_cfg = json.load(f)
config["base_model"] = disk_cfg.get("base_model", config["base_model"])
config["adapter_repo"] = disk_cfg.get("adapter_repo", config["adapter_repo"])
config["adapter_revision"] = disk_cfg.get("adapter_revision", config["adapter_revision"])
except Exception as e:
print(f"Failed to read {CONFIG_PATH}; falling back to defaults. Error: {e}")
return config
cfg = load_runtime_config()
MODEL_ID = cfg["base_model"]
ADAPTER_ID = cfg["adapter_repo"]
ADAPTER_REV = cfg["adapter_revision"]
print("Starting App Engine...")
os.makedirs("/tmp/offload", exist_ok=True)
device = "cuda" if torch.cuda.is_available() else "cpu"
processor = AutoProcessor.from_pretrained(MODEL_ID, use_fast=False)
model_kwargs = {
"pretrained_model_name_or_path": MODEL_ID,
"device_map": "auto",
"low_cpu_mem_usage": True,
"offload_folder": "/tmp/offload"
}
if device == "cuda":
model_kwargs["torch_dtype"] = torch.float16
model_kwargs["quantization_config"] = BitsAndBytesConfig(
load_in_4bit=True,
bnb_4bit_quant_type="nf4",
bnb_4bit_compute_dtype=torch.float16,
bnb_4bit_use_double_quant=True
)
else:
# CPU space: keep dtype low to reduce memory footprint.
model_kwargs["torch_dtype"] = torch.float16
model = Qwen2VLForConditionalGeneration.from_pretrained(**model_kwargs)
if ADAPTER_ID:
print(f"Loading custom fine-tuned LoRA weights: {ADAPTER_ID}@{ADAPTER_REV}")
try:
model = PeftModel.from_pretrained(
model,
ADAPTER_ID,
revision=ADAPTER_REV,
is_trainable=False
)
print("Adapter load successful.")
except Exception as e:
print(f"Failed to load adapter; serving base model instead. Error: {e}")
def diagnose_ecg(image: Image.Image = None, temp: float = 0.4, max_tokens: int = 768):
try:
if image is None:
return json.dumps({"error": "No image provided."})
system_prompt = (
"You are CardioAI, an ECG interpretation engine. "
"Always analyze the provided ECG image directly. "
"Do not provide generic AI disclaimers. "
"Return concise clinical content only."
)
user_prompt = (
"Interpret this ECG image and return exactly these sections: "
"1) Impression, 2) Rhythm, 3) Rate, 4) ST-T Findings, 5) Urgency. "
"If image quality is insufficient, write 'Non-diagnostic ECG image quality' in Impression."
)
messages = [
{"role": "system", "content": system_prompt},
{
"role": "user",
"content": [
{"type": "image"},
{"type": "text", "text": user_prompt}
]
}
]
text_input = processor.apply_chat_template(messages, tokenize=False, add_generation_prompt=True)
inputs = processor(
text=[text_input],
images=[image],
padding=True,
return_tensors="pt"
)
model_device = model.device if hasattr(model, "device") else torch.device(device)
inputs = {k: v.to(model_device) for k, v in inputs.items()}
with torch.no_grad():
generated_ids = model.generate(**inputs, max_new_tokens=int(max_tokens), temperature=float(temp), top_p=0.9, do_sample=True)
generated_ids_trimmed = [
out_ids[len(in_ids):] for in_ids, out_ids in zip(inputs["input_ids"], generated_ids)
]
output_text = processor.batch_decode(generated_ids_trimmed, skip_special_tokens=True, clean_up_tokenization_spaces=False)[0]
return output_text
except Exception as e:
return f"Error: {str(e)}"
demo = gr.Interface(
fn=diagnose_ecg,
inputs=[
gr.Image(type="pil", label="ECG Image Scan"),
gr.Slider(minimum=0.0, maximum=1.0, value=0.4, step=0.1, label="Temperature"),
gr.Slider(minimum=128, maximum=1536, value=768, step=128, label="Max Tokens")
],
outputs=gr.Markdown(label="Clinical Report Output"),
title="CardioAI Inference API",
description="Fine-tuned Medical LLM for Electrocardiogram (ECG) Tracings."
)
if __name__ == "__main__":
demo.launch()