| |
| |
| |
| |
| |
| |
| import numpy as np |
|
|
|
|
| def crop_tag(cell): |
| return f'[{cell[1]}:{cell[3]},{cell[0]}:{cell[2]}]' |
|
|
|
|
| def crop_slice(cell): |
| return slice(cell[1], cell[3]), slice(cell[0], cell[2]) |
|
|
|
|
| def _start_pos(total_size, win_size, overlap): |
| |
| |
| assert 0 <= overlap < 1 |
| assert total_size >= win_size |
| spacing = win_size * (1 - overlap) |
| last_pt = total_size - win_size |
| n_windows = 2 + int((last_pt - 1) // spacing) |
| return np.linspace(0, last_pt, n_windows).round().astype(int) |
|
|
|
|
| def multiple_of_16(x): |
| return (x // 16) * 16 |
|
|
|
|
| def _make_overlapping_grid(H, W, size, overlap): |
| H_win = multiple_of_16(H * size // max(H, W)) |
| W_win = multiple_of_16(W * size // max(H, W)) |
| x = _start_pos(W, W_win, overlap) |
| y = _start_pos(H, H_win, overlap) |
| grid = np.stack(np.meshgrid(x, y, indexing='xy'), axis=-1) |
| grid = np.concatenate((grid, grid + (W_win, H_win)), axis=-1) |
| return grid.reshape(-1, 4) |
|
|
|
|
| def _cell_size(cell2): |
| width, height = cell2[:, 2] - cell2[:, 0], cell2[:, 3] - cell2[:, 1] |
| assert width.min() >= 0 |
| assert height.min() >= 0 |
| return width, height |
|
|
|
|
| def _norm_windows(cell2, H2, W2, forced_resolution=None): |
| |
| outcell = cell2.copy() |
| width, height = _cell_size(cell2) |
| width2, height2 = width.clip(max=W2), height.clip(max=H2) |
| if forced_resolution is None: |
| width2[width < height] = (height2[width < height] * 3.01 / 4).clip(max=W2) |
| height2[width >= height] = (width2[width >= height] * 3.01 / 4).clip(max=H2) |
| else: |
| forced_H, forced_W = forced_resolution |
| width2[:] = forced_W |
| height2[:] = forced_H |
|
|
| half = (width2 - width) / 2 |
| outcell[:, 0] -= half |
| outcell[:, 2] += half |
| half = (height2 - height) / 2 |
| outcell[:, 1] -= half |
| outcell[:, 3] += half |
|
|
| |
| outcell = np.floor(outcell).astype(int) |
| |
| tmpw, tmph = _cell_size(outcell) |
| outcell[:, 0] += tmpw.astype(tmpw.dtype) - width2.astype(tmpw.dtype) |
| outcell[:, 1] += tmph.astype(tmpw.dtype) - height2.astype(tmpw.dtype) |
|
|
| |
| outcell[:, 0::2] -= outcell[:, [0]].clip(max=0) |
| outcell[:, 1::2] -= outcell[:, [1]].clip(max=0) |
| outcell[:, 0::2] -= outcell[:, [2]].clip(min=W2) - W2 |
| outcell[:, 1::2] -= outcell[:, [3]].clip(min=H2) - H2 |
|
|
| width, height = _cell_size(outcell) |
| assert np.all(width == width2.astype(width.dtype)) and np.all( |
| height == height2.astype(height.dtype)), "Error, output is not of the expected shape." |
| assert np.all(width <= W2) |
| assert np.all(height <= H2) |
| return outcell |
|
|
|
|
| def _weight_pixels(cell, pix, assigned, gauss_var=2): |
| center = cell.reshape(-1, 2, 2).mean(axis=1) |
| width, height = _cell_size(cell) |
|
|
| |
| dist = (center[:, None] - pix[None]) / np.c_[width, height][:, None] |
| dist2 = np.square(dist).sum(axis=-1) |
|
|
| assert assigned.shape == dist2.shape |
| res = np.where(assigned, np.exp(-gauss_var * dist2), 0) |
| return res |
|
|
|
|
| def pos2d_in_rect(p1, cell1): |
| x, y = p1.T |
| l, t, r, b = cell1 |
| assigned = (l <= x) & (x < r) & (t <= y) & (y < b) |
| return assigned |
|
|
|
|
| def _score_cell(cell1, H2, W2, p1, p2, min_corres=10, forced_resolution=None): |
| assert p1.shape == p2.shape |
|
|
| |
| assigned = pos2d_in_rect(p1, cell1[None].T) |
| assert assigned.shape == (len(cell1), len(p1)) |
|
|
| |
| valid_cells = assigned.sum(axis=1) >= min_corres |
| cell1 = cell1[valid_cells] |
| assigned = assigned[valid_cells] |
| if not valid_cells.any(): |
| return cell1, cell1, assigned |
|
|
| |
| assigned_p1 = np.empty((len(cell1), len(p1), 2), dtype=np.float32) |
| assigned_p2 = np.empty((len(cell1), len(p2), 2), dtype=np.float32) |
| assigned_p1[:] = p1[None] |
| assigned_p2[:] = p2[None] |
| assigned_p1[~assigned] = np.nan |
| assigned_p2[~assigned] = np.nan |
|
|
| |
| |
| cell_center2 = np.nanmean(assigned_p2, axis=1) |
| im1_q25, im1_q75 = np.nanquantile(assigned_p1, (0.1, 0.9), axis=1) |
| im2_q25, im2_q75 = np.nanquantile(assigned_p2, (0.1, 0.9), axis=1) |
|
|
| robust_std1 = (im1_q75 - im1_q25).clip(20.) |
| robust_std2 = (im2_q75 - im2_q25).clip(20.) |
|
|
| cell_size1 = (cell1[:, 2:4] - cell1[:, 0:2]) |
| cell_size2 = cell_size1 * robust_std2 / robust_std1 |
| cell2 = np.c_[cell_center2 - cell_size2 / 2, cell_center2 + cell_size2 / 2] |
|
|
| |
| cell2 = _norm_windows(cell2, H2, W2, forced_resolution=forced_resolution) |
|
|
| |
| corres_weights = _weight_pixels(cell1, p1, assigned) * _weight_pixels(cell2, p2, assigned) |
|
|
| |
| return cell1, cell2, corres_weights |
|
|
|
|
| def greedy_selection(corres_weights, target=0.9): |
| |
| |
| assert 0 < target <= 1 |
| corres_weights = corres_weights.copy() |
|
|
| total = corres_weights.max(axis=0).sum() |
| target *= total |
|
|
| |
| res = [] |
| cur = np.zeros(corres_weights.shape[1]) |
|
|
| while cur.sum() < target: |
| |
| best = corres_weights.sum(axis=1).argmax() |
| res.append(best) |
|
|
| |
| cur += corres_weights[best] |
| |
|
|
| |
| corres_weights = (corres_weights - corres_weights[best]).clip(min=0) |
|
|
| return res |
|
|
|
|
| def select_pairs_of_crops(img_q, img_b, pos2d_in_query, pos2d_in_ref, maxdim=512, overlap=.5, forced_resolution=None): |
| |
| grid_q = _make_overlapping_grid(*img_q.shape[:2], maxdim, overlap) |
| grid_b = _make_overlapping_grid(*img_b.shape[:2], maxdim, overlap) |
|
|
| assert forced_resolution is None or len(forced_resolution) == 2 |
| if isinstance(forced_resolution[0], int) or not len(forced_resolution[0]) == 2: |
| forced_resolution1 = forced_resolution2 = forced_resolution |
| else: |
| assert len(forced_resolution[1]) == 2 |
| forced_resolution1 = forced_resolution[0] |
| forced_resolution2 = forced_resolution[1] |
|
|
| |
| grid_q = _norm_windows(grid_q.astype(float), *img_q.shape[:2], forced_resolution=forced_resolution1) |
| grid_b = _norm_windows(grid_b.astype(float), *img_b.shape[:2], forced_resolution=forced_resolution2) |
|
|
| |
| pairs_q = _score_cell(grid_q, *img_b.shape[:2], pos2d_in_query, pos2d_in_ref, forced_resolution=forced_resolution2) |
| pairs_b = _score_cell(grid_b, *img_q.shape[:2], pos2d_in_ref, pos2d_in_query, forced_resolution=forced_resolution1) |
| pairs_b = pairs_b[1], pairs_b[0], pairs_b[2] |
|
|
| |
| cell1, cell2, corres_weights = map(np.concatenate, zip(pairs_q, pairs_b)) |
| if len(corres_weights) == 0: |
| return |
| order = greedy_selection(corres_weights, target=0.9) |
|
|
| for i in order: |
| def pair_tag(qi, bi): return (str(qi) + crop_tag(cell1[i]), str(bi) + crop_tag(cell2[i])) |
| yield cell1[i], cell2[i], pair_tag |
|
|