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d6684f1
1
Parent(s):
9ed1c3d
added bounding box features
Browse files- Dockerfile +2 -0
- app.py +56 -2
Dockerfile
CHANGED
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@@ -13,6 +13,8 @@ COPY --chown=user ./requirements.txt requirements.txt
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RUN pip install --no-cache-dir --upgrade -r requirements.txt
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RUN pip install torch torchvision --index-url https://download.pytorch.org/whl/cpu
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RUN pip install torchxrayvision
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COPY --chown=user . /app
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CMD ["uvicorn", "app:app", "--host", "0.0.0.0", "--port", "7860"]
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RUN pip install --no-cache-dir --upgrade -r requirements.txt
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RUN pip install torch torchvision --index-url https://download.pytorch.org/whl/cpu
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RUN pip install torchxrayvision
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RUN pip install grad-cam
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RUN pip install opencv-python
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COPY --chown=user . /app
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CMD ["uvicorn", "app:app", "--host", "0.0.0.0", "--port", "7860"]
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app.py
CHANGED
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@@ -1,11 +1,64 @@
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from fastapi import FastAPI,Query,HTTPException
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import torchxrayvision as xrv
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import skimage, torch, torchvision
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import
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app = FastAPI()
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model = xrv.models.DenseNet(weights="densenet121-res224-all")
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@app.get("/")
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def greet_json():
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return {"Hello": "World!"}
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@@ -28,8 +81,9 @@ def predict(image_url:str = Query(..., description="URL to a chest X-ray image")
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for k,v in prediction.items():
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pred_output.update({k:round(v,2)})
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return {"prediction_result":pred_output,"bounding_box":{pred_label:
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except Exception as e:
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print(e)
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raise HTTPException(status_code=400, detail=f"Failed to fetch/process image: {str(e)}")
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from fastapi import FastAPI,Query,HTTPException
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import torchxrayvision as xrv
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import skimage, torch, torchvision
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import cv2
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import numpy as np
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from pytorch_grad_cam import GradCAM
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from pytorch_grad_cam.utils.model_targets import ClassifierOutputTarget
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from fastapi.middleware.cors import CORSMiddleware
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app = FastAPI()
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# Add the frontend origin here
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origins = [
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"http://localhost:8080", # Your frontend running on port 8080
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"http://127.0.0.1:8080"
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]
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app.add_middleware(
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CORSMiddleware,
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allow_origins=origins, # OR ["*"] only during dev
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allow_credentials=True,
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allow_methods=["*"],
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allow_headers=["*"],
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)
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model = xrv.models.DenseNet(weights="densenet121-res224-all")
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def show_anomaly_bounding_box(img_tensor, model, class_index=None):
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target_layer = model.features[-1]
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cam = GradCAM(model=model, target_layers=[target_layer])
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with torch.no_grad():
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outputs = model(img_tensor[None, ...])
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pred_index = class_index if class_index is not None else torch.argmax(outputs[0]).item()
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grayscale_cam = cam(input_tensor=img_tensor[None, ...],
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targets=[ClassifierOutputTarget(pred_index)])
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grayscale_cam = grayscale_cam[0, :]
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input_img = img_tensor.numpy()[0]
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input_img_norm = (input_img - input_img.min()) / (input_img.max() - input_img.min())
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input_img_rgb = cv2.cvtColor((input_img_norm * 255).astype(np.uint8), cv2.COLOR_GRAY2RGB)
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cam_resized = cv2.resize(grayscale_cam, (224, 224))
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cam_uint8 = (cam_resized * 255).astype(np.uint8)
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_, thresh = cv2.threshold(cam_uint8, 100, 255, cv2.THRESH_BINARY)
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contours, _ = cv2.findContours(thresh, cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_SIMPLE)
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bounding_box = ()
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for cnt in contours:
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x, y, w, h = cv2.boundingRect(cnt)
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bounding_box = ((x,y),(x+w,y+h))
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# cv2.rectangle(input_img_rgb, (x, y), (x + w, y + h), (0, 255, 0), 2)
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return bounding_box
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@app.get("/")
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def greet_json():
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return {"Hello": "World!"}
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for k,v in prediction.items():
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pred_output.update({k:round(v,2)})
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get_bounding_box = show_anomaly_bounding_box(img,model=model)
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return {"prediction_result":pred_output,"bounding_box":{pred_label:get_bounding_box}}
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except Exception as e:
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print(e)
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raise HTTPException(status_code=400, detail=f"Failed to fetch/process image: {str(e)}")
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