Spaces:
Sleeping
Sleeping
iamhmh
commited on
Commit
·
397dad3
1
Parent(s):
a03ff22
Initial model upload
Browse files- app.py +17 -0
- inference.py +90 -0
- labels.json +9 -0
- model.pth +3 -0
- model.py +91 -0
- requirements.txt +5 -0
app.py
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import gradio as gr
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from inference import predict
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def classify(image):
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idx, label, probs = predict(image)
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return {label: float(1.0)}
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demo = gr.Interface(
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fn=classify,
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inputs=gr.Image(type="filepath", label="Upload a dermatoscopic image"),
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outputs=gr.Label(label="Predicted lesion"),
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title="Derm-CNN HAM10000 – Skin Lesion Classifier",
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description="Upload a dermatoscopic image and get the predicted skin lesion class.",
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allow_flagging="never"
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)
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demo.launch()
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inference.py
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import argparse
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import json
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from pathlib import Path
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import numpy as np
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import torch
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from PIL import Image
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from model import load_model
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def load_labels(labels_path: str = "labels.json") -> dict[int, str]:
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labels_file = Path(labels_path)
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if not labels_file.exists():
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raise FileNotFoundError(f"labels.json not found at: {labels_file}")
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with labels_file.open("r", encoding="utf-8") as f:
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raw = json.load(f)
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return {int(k): v for k, v in raw.items()}
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def preprocess_image(image_path: str) -> torch.Tensor:
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img_file = Path(image_path)
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if not img_file.exists():
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raise FileNotFoundError(f"Image not found at: {img_file}")
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img = Image.open(img_file).convert("RGB")
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img = img.resize((28, 28))
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arr = np.array(img).astype("float32") / 255.0 # [H, W, C] in [0,1]
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arr = np.transpose(arr, (2, 0, 1)) # [C, H, W]
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tensor = torch.from_numpy(arr).unsqueeze(0) # [1, 3, 28, 28]
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return tensor
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def predict(
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image_path: str,
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weights_path: str = "model.pth",
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labels_path: str = "labels.json"
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):
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model, device = load_model(weights_path)
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id2label = load_labels(labels_path)
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x = preprocess_image(image_path).to(device)
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with torch.no_grad():
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logits = model(x)
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probs = torch.softmax(logits, dim=1)[0]
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pred_idx = int(torch.argmax(probs).item())
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pred_label = id2label.get(pred_idx, str(pred_idx))
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probs_list = probs.cpu().tolist()
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return pred_idx, pred_label, probs_list
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def main():
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parser = argparse.ArgumentParser(
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description="Run inference with SkinCNN on a dermatoscopic image."
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)
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parser.add_argument("image", type=str, help="Path to input dermatoscopic image.")
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parser.add_argument(
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"--weights",
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type=str,
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default="model.pth",
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help="Path to model weights (.pth).",
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)
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parser.add_argument(
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"--labels",
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type=str,
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default="labels.json",
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help="Path to labels.json.",
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)
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args = parser.parse_args()
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idx, label, probs = predict(
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image_path=args.image,
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weights_path=args.weights,
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labels_path=args.labels,
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)
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print(f"Predicted class index: {idx}")
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print(f"Predicted label : {label}")
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print(f"Probabilities : {probs}")
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if __name__ == "__main__":
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main()
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labels.json
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{
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"0": "Actinic keratoses (akiec)",
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"1": "Basal cell carcinoma (bcc)",
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"2": "Benign keratosis (bkl)",
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"3": "Dermatofibroma (df)",
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"4": "Melanoma (mel)",
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"5": "Melanocytic nevi (nv)",
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"6": "Vascular lesions (vasc)"
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}
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model.pth
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version https://git-lfs.github.com/spec/v1
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oid sha256:c720b1a42a5c99ff88a858e71fff5587d0c9c8c21a6c7d6997c6c048f90c7551
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size 5119928
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model.py
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import torch
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import torch.nn as nn
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class SkinCNN(nn.Module):
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def __init__(self, num_classes: int = 7):
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super().__init__()
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# Feature extractor
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self.features = nn.Sequential(
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# Block 1: 3 -> 32
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nn.Conv2d(3, 32, kernel_size=3, padding=1),
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nn.ReLU(),
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nn.MaxPool2d(kernel_size=2), # 28x28 -> 14x14
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nn.BatchNorm2d(32),
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# Block 2: 32 -> 64 -> 64
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nn.Conv2d(32, 64, kernel_size=3, padding=1),
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nn.ReLU(),
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nn.Conv2d(64, 64, kernel_size=3, padding=1),
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nn.ReLU(),
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nn.MaxPool2d(kernel_size=2), # 14x14 -> 7x7
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nn.BatchNorm2d(64),
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# Block 3: 64 -> 128 -> 128
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nn.Conv2d(64, 128, kernel_size=3, padding=1),
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nn.ReLU(),
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nn.Conv2d(128, 128, kernel_size=3, padding=1),
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nn.ReLU(),
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nn.MaxPool2d(kernel_size=2), # 7x7 -> 3x3
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nn.BatchNorm2d(128),
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# Block 4: 128 -> 256 -> 256
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nn.Conv2d(128, 256, kernel_size=3, padding=1),
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nn.ReLU(),
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nn.Conv2d(256, 256, kernel_size=3, padding=1),
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nn.ReLU(),
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nn.MaxPool2d(kernel_size=2) # 3x3 -> 1x1
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)
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# Classifier: 5 FC layers with BatchNorm + Dropout at input
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self.classifier = nn.Sequential(
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nn.Flatten(),
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nn.Dropout(0.2),
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# 256*1*1 -> 256
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nn.Linear(256 * 1 * 1, 256),
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nn.ReLU(),
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nn.BatchNorm1d(256),
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# 256 -> 128
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nn.Linear(256, 128),
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nn.ReLU(),
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nn.BatchNorm1d(128),
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# 128 -> 64
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nn.Linear(128, 64),
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nn.ReLU(),
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nn.BatchNorm1d(64),
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# 64 -> 32
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nn.Linear(64, 32),
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nn.ReLU(),
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nn.BatchNorm1d(32),
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# 32 -> num_classes
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nn.Linear(32, num_classes)
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)
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def forward(self, x: torch.Tensor) -> torch.Tensor:
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x = self.features(x)
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x = self.classifier(x)
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return x
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def load_model(
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weights_path: str = "model.pth",
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device: str | None = None
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) -> tuple[nn.Module, torch.device]:
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if device is None:
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device = "cuda" if torch.cuda.is_available() else "cpu"
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device = torch.device(device)
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model = SkinCNN(num_classes=7)
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state_dict = torch.load(weights_path, map_location=device)
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model.load_state_dict(state_dict)
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model.to(device)
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model.eval()
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return model, device
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requirements.txt
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torch
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torchvision
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numpy
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pillow
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gradio
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