Spaces:
Sleeping
Sleeping
Commit ·
7a317d2
1
Parent(s): c34ac93
Add all backend files for HF Space deployment
Browse files- Dockerfile +38 -0
- database.py +513 -0
- encryption.py +71 -0
- localization.py +83 -0
- requirements.txt +21 -0
- storage.py +92 -0
Dockerfile
ADDED
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@@ -0,0 +1,38 @@
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# Hugging Face Spaces Docker Configuration
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FROM python:3.10-slim
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# Create non-root user (required by HuggingFace)
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RUN useradd -m -u 1000 user
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ENV HOME=/home/user
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ENV PATH="/home/user/.local/bin:$PATH"
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WORKDIR /app
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# Install system dependencies as root
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RUN apt-get update && apt-get install -y --no-install-recommends \
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libgl1 \
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libglib2.0-0 \
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libsm6 \
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libxext6 \
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libxrender1 \
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&& rm -rf /var/lib/apt/lists/*
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# Create directories as root BEFORE switching user
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RUN mkdir -p /app/storage/uploads /app/storage/processed && \
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chown -R user:user /app
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# Switch to non-root user
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USER user
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# Copy requirements and install
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COPY --chown=user requirements.txt .
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RUN pip install --no-cache-dir --user -r requirements.txt
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# Copy the rest of the application
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COPY --chown=user . /app
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# Expose port 7860 (required by Hugging Face Spaces)
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EXPOSE 7860
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# Run the application
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CMD ["uvicorn", "main:app", "--host", "0.0.0.0", "--port", "7860"]
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database.py
ADDED
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@@ -0,0 +1,513 @@
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| 1 |
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import sqlite3
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import os
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| 3 |
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import logging
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| 4 |
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from typing import Optional, List, Dict, Any
|
| 5 |
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from enum import Enum
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| 6 |
+
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| 7 |
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class JobStatus(str, Enum):
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| 8 |
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PENDING = "pending"
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| 9 |
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PROCESSING = "processing"
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| 10 |
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COMPLETED = "completed"
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| 11 |
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FAILED = "failed"
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| 12 |
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| 13 |
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BASE_DIR = os.path.dirname(os.path.abspath(__file__))
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| 14 |
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# HUGGING FACE PERSISTENCE FIX: Use /data if available
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| 15 |
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if os.path.exists('/data'):
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| 16 |
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DB_NAME = '/data/elephmind.db'
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| 17 |
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logging.info("Using PERSISTENT storage at /data/elephmind.db")
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| 18 |
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else:
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| 19 |
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DB_NAME = os.path.join(BASE_DIR, "elephmind.db")
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| 20 |
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logging.info(f"Using LOCAL storage at {DB_NAME}")
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| 21 |
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| 22 |
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def get_db_connection():
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| 23 |
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conn = sqlite3.connect(DB_NAME)
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| 24 |
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conn.row_factory = sqlite3.Row
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| 25 |
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return conn
|
| 26 |
+
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| 27 |
+
def init_db():
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| 28 |
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conn = get_db_connection()
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| 29 |
+
c = conn.cursor()
|
| 30 |
+
|
| 31 |
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# Create Users Table
|
| 32 |
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c.execute('''
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| 33 |
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CREATE TABLE IF NOT EXISTS users (
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| 34 |
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id INTEGER PRIMARY KEY AUTOINCREMENT,
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| 35 |
+
username TEXT UNIQUE NOT NULL,
|
| 36 |
+
hashed_password TEXT NOT NULL,
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| 37 |
+
email TEXT,
|
| 38 |
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security_question TEXT NOT NULL,
|
| 39 |
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security_answer TEXT NOT NULL,
|
| 40 |
+
created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
|
| 41 |
+
)
|
| 42 |
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''')
|
| 43 |
+
|
| 44 |
+
# Create Feedback Table
|
| 45 |
+
c.execute('''
|
| 46 |
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CREATE TABLE IF NOT EXISTS feedback (
|
| 47 |
+
id INTEGER PRIMARY KEY AUTOINCREMENT,
|
| 48 |
+
username TEXT,
|
| 49 |
+
rating INTEGER,
|
| 50 |
+
comment TEXT,
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| 51 |
+
created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
|
| 52 |
+
)
|
| 53 |
+
''')
|
| 54 |
+
|
| 55 |
+
# Create Audit Log Table (RGPD Compliance)
|
| 56 |
+
c.execute('''
|
| 57 |
+
CREATE TABLE IF NOT EXISTS audit_log (
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| 58 |
+
id INTEGER PRIMARY KEY AUTOINCREMENT,
|
| 59 |
+
username TEXT,
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| 60 |
+
action TEXT NOT NULL,
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| 61 |
+
resource TEXT,
|
| 62 |
+
ip_address TEXT,
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| 63 |
+
created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
|
| 64 |
+
)
|
| 65 |
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''')
|
| 66 |
+
|
| 67 |
+
# --- MIGRATIONS ---
|
| 68 |
+
# Ensure security columns exist (backward compatibility)
|
| 69 |
+
try:
|
| 70 |
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c.execute("ALTER TABLE users ADD COLUMN security_question TEXT DEFAULT 'Question?'")
|
| 71 |
+
except sqlite3.OperationalError:
|
| 72 |
+
pass # Column exists
|
| 73 |
+
|
| 74 |
+
try:
|
| 75 |
+
c.execute("ALTER TABLE users ADD COLUMN security_answer TEXT DEFAULT 'answer'")
|
| 76 |
+
except sqlite3.OperationalError:
|
| 77 |
+
pass # Column exists
|
| 78 |
+
# ------------------
|
| 79 |
+
|
| 80 |
+
# Create Patients Table
|
| 81 |
+
c.execute('''
|
| 82 |
+
CREATE TABLE IF NOT EXISTS patients (
|
| 83 |
+
id INTEGER PRIMARY KEY AUTOINCREMENT,
|
| 84 |
+
patient_id TEXT UNIQUE NOT NULL, -- e.g. PAT-2026-1234
|
| 85 |
+
owner_username TEXT NOT NULL,
|
| 86 |
+
first_name TEXT,
|
| 87 |
+
last_name TEXT,
|
| 88 |
+
birth_date TEXT,
|
| 89 |
+
photo TEXT, -- Stores base64 or URL
|
| 90 |
+
created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP,
|
| 91 |
+
FOREIGN KEY(owner_username) REFERENCES users(username)
|
| 92 |
+
)
|
| 93 |
+
''')
|
| 94 |
+
|
| 95 |
+
# Create Jobs Table (PERSISTENCE)
|
| 96 |
+
c.execute('''
|
| 97 |
+
CREATE TABLE IF NOT EXISTS jobs (
|
| 98 |
+
id TEXT PRIMARY KEY,
|
| 99 |
+
status TEXT NOT NULL,
|
| 100 |
+
result TEXT, -- JSON serialized
|
| 101 |
+
error TEXT,
|
| 102 |
+
created_at REAL,
|
| 103 |
+
storage_path TEXT,
|
| 104 |
+
username TEXT,
|
| 105 |
+
file_type TEXT,
|
| 106 |
+
FOREIGN KEY(username) REFERENCES users(username)
|
| 107 |
+
)
|
| 108 |
+
''')
|
| 109 |
+
|
| 110 |
+
conn.commit()
|
| 111 |
+
conn.close()
|
| 112 |
+
logging.info(f"Database {DB_NAME} initialized successfully.")
|
| 113 |
+
|
| 114 |
+
# --- User Operations ---
|
| 115 |
+
|
| 116 |
+
def create_user(user: Dict[str, Any]) -> bool:
|
| 117 |
+
try:
|
| 118 |
+
conn = get_db_connection()
|
| 119 |
+
c = conn.cursor()
|
| 120 |
+
c.execute('''
|
| 121 |
+
INSERT INTO users (username, hashed_password, email, security_question, security_answer)
|
| 122 |
+
VALUES (?, ?, ?, ?, ?)
|
| 123 |
+
''', (
|
| 124 |
+
user['username'],
|
| 125 |
+
user['hashed_password'],
|
| 126 |
+
user.get('email', ''),
|
| 127 |
+
user['security_question'],
|
| 128 |
+
user['security_answer']
|
| 129 |
+
))
|
| 130 |
+
conn.commit()
|
| 131 |
+
return True
|
| 132 |
+
except sqlite3.IntegrityError:
|
| 133 |
+
return False
|
| 134 |
+
except Exception as e:
|
| 135 |
+
logging.error(f"Error creating user: {e}")
|
| 136 |
+
return False
|
| 137 |
+
finally:
|
| 138 |
+
conn.close()
|
| 139 |
+
|
| 140 |
+
def get_user_by_username(username: str) -> Optional[Dict[str, Any]]:
|
| 141 |
+
conn = get_db_connection()
|
| 142 |
+
c = conn.cursor()
|
| 143 |
+
c.execute('SELECT * FROM users WHERE username = ?', (username,))
|
| 144 |
+
row = c.fetchone()
|
| 145 |
+
conn.close()
|
| 146 |
+
if row:
|
| 147 |
+
return dict(row)
|
| 148 |
+
return None
|
| 149 |
+
|
| 150 |
+
def update_password(username: str, new_hashed_password: str) -> bool:
|
| 151 |
+
try:
|
| 152 |
+
conn = get_db_connection()
|
| 153 |
+
c = conn.cursor()
|
| 154 |
+
c.execute('UPDATE users SET hashed_password = ? WHERE username = ?', (new_hashed_password, username))
|
| 155 |
+
conn.commit()
|
| 156 |
+
conn.close()
|
| 157 |
+
return True
|
| 158 |
+
except Exception as e:
|
| 159 |
+
logging.error(f"Error updating password: {e}")
|
| 160 |
+
return False
|
| 161 |
+
|
| 162 |
+
# --- Feedback Operations ---
|
| 163 |
+
|
| 164 |
+
def add_feedback(username: str, rating: int, comment: str):
|
| 165 |
+
conn = get_db_connection()
|
| 166 |
+
c = conn.cursor()
|
| 167 |
+
c.execute('INSERT INTO feedback (username, rating, comment) VALUES (?, ?, ?)', (username, rating, comment))
|
| 168 |
+
conn.commit()
|
| 169 |
+
conn.close()
|
| 170 |
+
|
| 171 |
+
# --- Audit Log Operations (RGPD Compliance) ---
|
| 172 |
+
|
| 173 |
+
def log_audit(username: str, action: str, resource: str = None, ip_address: str = None):
|
| 174 |
+
"""Log user actions for RGPD compliance and security auditing."""
|
| 175 |
+
try:
|
| 176 |
+
conn = get_db_connection()
|
| 177 |
+
c = conn.cursor()
|
| 178 |
+
c.execute(
|
| 179 |
+
'INSERT INTO audit_log (username, action, resource, ip_address) VALUES (?, ?, ?, ?)',
|
| 180 |
+
(username, action, resource, ip_address)
|
| 181 |
+
)
|
| 182 |
+
conn.commit()
|
| 183 |
+
conn.close()
|
| 184 |
+
except Exception as e:
|
| 185 |
+
logging.error(f"Error logging audit: {e}")
|
| 186 |
+
|
| 187 |
+
def get_user_audit_log(username: str, limit: int = 100) -> List[Dict[str, Any]]:
|
| 188 |
+
"""Get audit log for a specific user."""
|
| 189 |
+
conn = get_db_connection()
|
| 190 |
+
c = conn.cursor()
|
| 191 |
+
c.execute(
|
| 192 |
+
'SELECT * FROM audit_log WHERE username = ? ORDER BY created_at DESC LIMIT ?',
|
| 193 |
+
(username, limit)
|
| 194 |
+
)
|
| 195 |
+
rows = c.fetchall()
|
| 196 |
+
conn.close()
|
| 197 |
+
return [dict(row) for row in rows]
|
| 198 |
+
|
| 199 |
+
# --- Analysis Registry (REAL DATA ONLY) ---
|
| 200 |
+
|
| 201 |
+
def init_analysis_registry():
|
| 202 |
+
"""Create the analysis_registry table if it doesn't exist."""
|
| 203 |
+
conn = get_db_connection()
|
| 204 |
+
c = conn.cursor()
|
| 205 |
+
c.execute('''
|
| 206 |
+
CREATE TABLE IF NOT EXISTS analysis_registry (
|
| 207 |
+
id INTEGER PRIMARY KEY AUTOINCREMENT,
|
| 208 |
+
username TEXT NOT NULL,
|
| 209 |
+
domain TEXT NOT NULL,
|
| 210 |
+
top_diagnosis TEXT,
|
| 211 |
+
confidence REAL,
|
| 212 |
+
priority TEXT,
|
| 213 |
+
computation_time_ms INTEGER,
|
| 214 |
+
file_type TEXT,
|
| 215 |
+
created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
|
| 216 |
+
)
|
| 217 |
+
''')
|
| 218 |
+
conn.commit()
|
| 219 |
+
conn.close()
|
| 220 |
+
|
| 221 |
+
def log_analysis(
|
| 222 |
+
username: str,
|
| 223 |
+
domain: str,
|
| 224 |
+
top_diagnosis: str,
|
| 225 |
+
confidence: float,
|
| 226 |
+
priority: str,
|
| 227 |
+
computation_time_ms: int,
|
| 228 |
+
file_type: str
|
| 229 |
+
) -> bool:
|
| 230 |
+
"""Log a real analysis to the registry. NO FAKE DATA."""
|
| 231 |
+
try:
|
| 232 |
+
conn = get_db_connection()
|
| 233 |
+
c = conn.cursor()
|
| 234 |
+
c.execute('''
|
| 235 |
+
INSERT INTO analysis_registry
|
| 236 |
+
(username, domain, top_diagnosis, confidence, priority, computation_time_ms, file_type)
|
| 237 |
+
VALUES (?, ?, ?, ?, ?, ?, ?)
|
| 238 |
+
''', (username, domain, top_diagnosis, confidence, priority, computation_time_ms, file_type))
|
| 239 |
+
conn.commit()
|
| 240 |
+
conn.close()
|
| 241 |
+
return True
|
| 242 |
+
except Exception as e:
|
| 243 |
+
logging.error(f"Error logging analysis: {e}")
|
| 244 |
+
return False
|
| 245 |
+
|
| 246 |
+
def get_dashboard_stats(username: str) -> Dict[str, Any]:
|
| 247 |
+
"""Get real dashboard statistics for a user. Returns zeros if no data."""
|
| 248 |
+
conn = get_db_connection()
|
| 249 |
+
c = conn.cursor()
|
| 250 |
+
|
| 251 |
+
# Total count
|
| 252 |
+
c.execute('SELECT COUNT(*) FROM analysis_registry WHERE username = ?', (username,))
|
| 253 |
+
total = c.fetchone()[0]
|
| 254 |
+
|
| 255 |
+
# By domain
|
| 256 |
+
c.execute('''
|
| 257 |
+
SELECT domain, COUNT(*) as count
|
| 258 |
+
FROM analysis_registry
|
| 259 |
+
WHERE username = ?
|
| 260 |
+
GROUP BY domain
|
| 261 |
+
''', (username,))
|
| 262 |
+
by_domain = {row['domain']: row['count'] for row in c.fetchall()}
|
| 263 |
+
|
| 264 |
+
# By priority
|
| 265 |
+
c.execute('''
|
| 266 |
+
SELECT priority, COUNT(*) as count
|
| 267 |
+
FROM analysis_registry
|
| 268 |
+
WHERE username = ?
|
| 269 |
+
GROUP BY priority
|
| 270 |
+
''', (username,))
|
| 271 |
+
by_priority = {row['priority']: row['count'] for row in c.fetchall()}
|
| 272 |
+
|
| 273 |
+
# Average computation time
|
| 274 |
+
c.execute('''
|
| 275 |
+
SELECT AVG(computation_time_ms)
|
| 276 |
+
FROM analysis_registry
|
| 277 |
+
WHERE username = ?
|
| 278 |
+
''', (username,))
|
| 279 |
+
avg_time = c.fetchone()[0] or 0
|
| 280 |
+
|
| 281 |
+
conn.close()
|
| 282 |
+
|
| 283 |
+
return {
|
| 284 |
+
"total_analyses": total,
|
| 285 |
+
"by_domain": by_domain,
|
| 286 |
+
"by_priority": by_priority,
|
| 287 |
+
"avg_computation_time_ms": round(avg_time, 0)
|
| 288 |
+
}
|
| 289 |
+
|
| 290 |
+
def get_recent_analyses(username: str, limit: int = 10) -> List[Dict[str, Any]]:
|
| 291 |
+
"""Get recent real analyses for a user. Returns empty list if none."""
|
| 292 |
+
conn = get_db_connection()
|
| 293 |
+
c = conn.cursor()
|
| 294 |
+
c.execute('''
|
| 295 |
+
SELECT id, domain, top_diagnosis, confidence, priority, computation_time_ms, file_type, created_at
|
| 296 |
+
FROM analysis_registry
|
| 297 |
+
WHERE username = ?
|
| 298 |
+
ORDER BY created_at DESC
|
| 299 |
+
LIMIT ?
|
| 300 |
+
''', (username, limit))
|
| 301 |
+
rows = c.fetchall()
|
| 302 |
+
conn.close()
|
| 303 |
+
return [dict(row) for row in rows]
|
| 304 |
+
|
| 305 |
+
# --- Patient Operations (New for Migration) ---
|
| 306 |
+
|
| 307 |
+
def create_patient(
|
| 308 |
+
owner_username: str,
|
| 309 |
+
patient_id: str,
|
| 310 |
+
first_name: str,
|
| 311 |
+
last_name: str,
|
| 312 |
+
birth_date: str,
|
| 313 |
+
photo: str
|
| 314 |
+
) -> Optional[int]:
|
| 315 |
+
"""Create a new patient record."""
|
| 316 |
+
try:
|
| 317 |
+
conn = get_db_connection()
|
| 318 |
+
c = conn.cursor()
|
| 319 |
+
c.execute('''
|
| 320 |
+
INSERT INTO patients (owner_username, patient_id, first_name, last_name, birth_date, photo)
|
| 321 |
+
VALUES (?, ?, ?, ?, ?, ?)
|
| 322 |
+
''', (owner_username, patient_id, first_name, last_name, birth_date, photo))
|
| 323 |
+
patient_id_db = c.lastrowid
|
| 324 |
+
conn.commit()
|
| 325 |
+
conn.close()
|
| 326 |
+
return patient_id_db
|
| 327 |
+
except Exception as e:
|
| 328 |
+
logging.error(f"Error creating patient: {e}")
|
| 329 |
+
return None
|
| 330 |
+
|
| 331 |
+
def get_patients_by_user(username: str) -> List[Dict[str, Any]]:
|
| 332 |
+
"""Get all patients belonging to a user."""
|
| 333 |
+
conn = get_db_connection()
|
| 334 |
+
c = conn.cursor()
|
| 335 |
+
c.execute('SELECT * FROM patients WHERE owner_username = ? ORDER BY created_at DESC', (username,))
|
| 336 |
+
rows = c.fetchall()
|
| 337 |
+
conn.close()
|
| 338 |
+
return [dict(row) for row in rows]
|
| 339 |
+
|
| 340 |
+
def delete_patient(username: str, patient_db_id: int) -> bool:
|
| 341 |
+
"""Delete a patient record if owned by user."""
|
| 342 |
+
try:
|
| 343 |
+
conn = get_db_connection()
|
| 344 |
+
c = conn.cursor()
|
| 345 |
+
c.execute('DELETE FROM patients WHERE id = ? AND owner_username = ?', (patient_db_id, username))
|
| 346 |
+
count = c.rowcount
|
| 347 |
+
conn.commit()
|
| 348 |
+
conn.close()
|
| 349 |
+
return count > 0
|
| 350 |
+
except Exception as e:
|
| 351 |
+
logging.error(f"Error deleting patient: {e}")
|
| 352 |
+
return False
|
| 353 |
+
|
| 354 |
+
def update_patient(username: str, patient_db_id: int, updates: Dict[str, Any]) -> bool:
|
| 355 |
+
"""Update patient fields."""
|
| 356 |
+
try:
|
| 357 |
+
conn = get_db_connection()
|
| 358 |
+
c = conn.cursor()
|
| 359 |
+
|
| 360 |
+
# Build query dynamically
|
| 361 |
+
fields = []
|
| 362 |
+
values = []
|
| 363 |
+
for k, v in updates.items():
|
| 364 |
+
if k in ['first_name', 'last_name', 'birth_date', 'photo']:
|
| 365 |
+
fields.append(f"{k} = ?")
|
| 366 |
+
values.append(v)
|
| 367 |
+
|
| 368 |
+
if not fields:
|
| 369 |
+
return False
|
| 370 |
+
|
| 371 |
+
values.extend([patient_db_id, username])
|
| 372 |
+
query = f"UPDATE patients SET {', '.join(fields)} WHERE id = ? AND owner_username = ?"
|
| 373 |
+
|
| 374 |
+
|
| 375 |
+
c.execute(query, values)
|
| 376 |
+
count = c.rowcount
|
| 377 |
+
conn.commit()
|
| 378 |
+
conn.close()
|
| 379 |
+
return count > 0
|
| 380 |
+
except Exception as e:
|
| 381 |
+
logging.error(f"Error updating patient: {e}")
|
| 382 |
+
return False
|
| 383 |
+
|
| 384 |
+
# --- Job Operations (Persistence) ---
|
| 385 |
+
|
| 386 |
+
import json
|
| 387 |
+
|
| 388 |
+
def create_job(job_data: Dict[str, Any]):
|
| 389 |
+
"""Create a new job record."""
|
| 390 |
+
try:
|
| 391 |
+
conn = get_db_connection()
|
| 392 |
+
c = conn.cursor()
|
| 393 |
+
c.execute('''
|
| 394 |
+
INSERT INTO jobs (id, status, result, error, created_at, storage_path, username, file_type)
|
| 395 |
+
VALUES (?, ?, ?, ?, ?, ?, ?, ?)
|
| 396 |
+
''', (
|
| 397 |
+
job_data['id'],
|
| 398 |
+
job_data.get('status', 'pending'),
|
| 399 |
+
json.dumps(job_data.get('result')) if job_data.get('result') else None,
|
| 400 |
+
job_data.get('error'),
|
| 401 |
+
job_data['created_at'],
|
| 402 |
+
job_data.get('storage_path'),
|
| 403 |
+
job_data.get('username'),
|
| 404 |
+
job_data.get('file_type')
|
| 405 |
+
))
|
| 406 |
+
conn.commit()
|
| 407 |
+
conn.close()
|
| 408 |
+
return True
|
| 409 |
+
except Exception as e:
|
| 410 |
+
logging.error(f"Error creating job: {e}")
|
| 411 |
+
return False
|
| 412 |
+
|
| 413 |
+
def get_job(job_id: str, username: Optional[str] = None) -> Optional[Dict[str, Any]]:
|
| 414 |
+
"""Retrieve job by ID, optionally enforcing ownership via SQL."""
|
| 415 |
+
conn = get_db_connection()
|
| 416 |
+
c = conn.cursor()
|
| 417 |
+
|
| 418 |
+
if username:
|
| 419 |
+
c.execute('SELECT * FROM jobs WHERE id = ? AND username = ?', (job_id, username))
|
| 420 |
+
else:
|
| 421 |
+
c.execute('SELECT * FROM jobs WHERE id = ?', (job_id,))
|
| 422 |
+
|
| 423 |
+
row = c.fetchone()
|
| 424 |
+
conn.close()
|
| 425 |
+
|
| 426 |
+
if row:
|
| 427 |
+
job = dict(row)
|
| 428 |
+
if job['result']:
|
| 429 |
+
try:
|
| 430 |
+
job['result'] = json.loads(job['result'])
|
| 431 |
+
except:
|
| 432 |
+
job['result'] = None
|
| 433 |
+
return job
|
| 434 |
+
return None
|
| 435 |
+
|
| 436 |
+
def update_job_status(job_id: str, status: str, result: Optional[Dict] = None, error: Optional[str] = None):
|
| 437 |
+
"""Update job status and result."""
|
| 438 |
+
try:
|
| 439 |
+
conn = get_db_connection()
|
| 440 |
+
c = conn.cursor()
|
| 441 |
+
|
| 442 |
+
updates = ["status = ?"]
|
| 443 |
+
params = [status]
|
| 444 |
+
|
| 445 |
+
if result is not None:
|
| 446 |
+
updates.append("result = ?")
|
| 447 |
+
params.append(json.dumps(result))
|
| 448 |
+
|
| 449 |
+
if error is not None:
|
| 450 |
+
updates.append("error = ?")
|
| 451 |
+
params.append(error)
|
| 452 |
+
|
| 453 |
+
params.append(job_id)
|
| 454 |
+
|
| 455 |
+
query = f"UPDATE jobs SET {', '.join(updates)} WHERE id = ?"
|
| 456 |
+
c.execute(query, params)
|
| 457 |
+
conn.commit()
|
| 458 |
+
conn.close()
|
| 459 |
+
return True
|
| 460 |
+
except Exception as e:
|
| 461 |
+
logging.error(f"Error updating job: {e}")
|
| 462 |
+
return False
|
| 463 |
+
|
| 464 |
+
|
| 465 |
+
|
| 466 |
+
def get_latest_job(username: str) -> Optional[Dict[str, Any]]:
|
| 467 |
+
"""Retrieve the most recent job for a user."""
|
| 468 |
+
conn = get_db_connection()
|
| 469 |
+
c = conn.cursor()
|
| 470 |
+
c.execute('''
|
| 471 |
+
SELECT * FROM jobs
|
| 472 |
+
WHERE username = ?
|
| 473 |
+
ORDER BY created_at DESC
|
| 474 |
+
LIMIT 1
|
| 475 |
+
''', (username,))
|
| 476 |
+
row = c.fetchone()
|
| 477 |
+
conn.close()
|
| 478 |
+
|
| 479 |
+
if row:
|
| 480 |
+
job = dict(row)
|
| 481 |
+
if job['result']:
|
| 482 |
+
try:
|
| 483 |
+
job['result'] = json.loads(job['result'])
|
| 484 |
+
except:
|
| 485 |
+
job['result'] = None
|
| 486 |
+
return job
|
| 487 |
+
return None
|
| 488 |
+
|
| 489 |
+
def get_active_job_by_image(username: str, image_id: str) -> Optional[Dict[str, Any]]:
|
| 490 |
+
"""
|
| 491 |
+
Retrieve the most recent job for a specific image and user.
|
| 492 |
+
Used for Idempotence (Strict Lifecycle).
|
| 493 |
+
"""
|
| 494 |
+
conn = get_db_connection()
|
| 495 |
+
c = conn.cursor()
|
| 496 |
+
c.execute('''
|
| 497 |
+
SELECT * FROM jobs
|
| 498 |
+
WHERE username = ? AND storage_path = ?
|
| 499 |
+
ORDER BY created_at DESC
|
| 500 |
+
LIMIT 1
|
| 501 |
+
''', (username, image_id))
|
| 502 |
+
row = c.fetchone()
|
| 503 |
+
conn.close()
|
| 504 |
+
|
| 505 |
+
if row:
|
| 506 |
+
job = dict(row)
|
| 507 |
+
if job['result']:
|
| 508 |
+
try:
|
| 509 |
+
job['result'] = json.loads(job['result'])
|
| 510 |
+
except:
|
| 511 |
+
job['result'] = None
|
| 512 |
+
return job
|
| 513 |
+
return None
|
encryption.py
ADDED
|
@@ -0,0 +1,71 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
from cryptography.fernet import Fernet
|
| 2 |
+
import os
|
| 3 |
+
import sys
|
| 4 |
+
import logging
|
| 5 |
+
from typing import Optional
|
| 6 |
+
|
| 7 |
+
# -------------------------------------------------------------------------
|
| 8 |
+
# ENCRYPTION CONFIGURATION - PRODUCTION READY
|
| 9 |
+
# -------------------------------------------------------------------------
|
| 10 |
+
|
| 11 |
+
# Environment detection
|
| 12 |
+
ENVIRONMENT = os.getenv("ENVIRONMENT", "development")
|
| 13 |
+
IS_PRODUCTION = ENVIRONMENT == "production"
|
| 14 |
+
|
| 15 |
+
# Encryption Key - Load from environment variable
|
| 16 |
+
ENCRYPTION_KEY = os.getenv("ENCRYPTION_KEY")
|
| 17 |
+
|
| 18 |
+
if not ENCRYPTION_KEY:
|
| 19 |
+
if IS_PRODUCTION:
|
| 20 |
+
logging.critical("🔴 FATAL ERROR: ENCRYPTION_KEY must be set in production environment")
|
| 21 |
+
logging.critical("Generate one with: python -c 'from cryptography.fernet import Fernet; print(Fernet.generate_key().decode())'")
|
| 22 |
+
sys.exit(1) # Fail-fast in production
|
| 23 |
+
else:
|
| 24 |
+
# Development fallback with ephemeral key
|
| 25 |
+
ENCRYPTION_KEY = Fernet.generate_key().decode()
|
| 26 |
+
logging.warning("⚠️ WARNING: Using ephemeral encryption key (development only)")
|
| 27 |
+
|
| 28 |
+
# Initialize cipher
|
| 29 |
+
cipher_suite = Fernet(ENCRYPTION_KEY.encode() if isinstance(ENCRYPTION_KEY, str) else ENCRYPTION_KEY)
|
| 30 |
+
|
| 31 |
+
def encrypt_data(data: str) -> str:
|
| 32 |
+
"""
|
| 33 |
+
Encrypts a string and returns the encrypted token as a string.
|
| 34 |
+
"""
|
| 35 |
+
if not data: return ""
|
| 36 |
+
encrypted_bytes = cipher_suite.encrypt(data.encode('utf-8'))
|
| 37 |
+
return encrypted_bytes.decode('utf-8')
|
| 38 |
+
|
| 39 |
+
def decrypt_data(token: str) -> Optional[str]:
|
| 40 |
+
"""
|
| 41 |
+
Decrypts a token and returns the original string.
|
| 42 |
+
"""
|
| 43 |
+
if not token: return None
|
| 44 |
+
try:
|
| 45 |
+
decrypted_bytes = cipher_suite.decrypt(token.encode('utf-8'))
|
| 46 |
+
return decrypted_bytes.decode('utf-8')
|
| 47 |
+
except Exception as e:
|
| 48 |
+
print(f"Decryption failed: {e}")
|
| 49 |
+
return None
|
| 50 |
+
|
| 51 |
+
def rotate_key():
|
| 52 |
+
"""
|
| 53 |
+
Example function to rotate keys (advanced).
|
| 54 |
+
"""
|
| 55 |
+
global key, cipher_suite
|
| 56 |
+
key = Fernet.generate_key()
|
| 57 |
+
cipher_suite = Fernet(key)
|
| 58 |
+
with open(ENCRYPTION_KEY_PATH, "wb") as key_file:
|
| 59 |
+
key_file.write(key)
|
| 60 |
+
print(f"New key generated and saved to {ENCRYPTION_KEY_PATH}")
|
| 61 |
+
|
| 62 |
+
if __name__ == "__main__":
|
| 63 |
+
# Test
|
| 64 |
+
original = "Jean Dupont - Patient Zero"
|
| 65 |
+
encrypted = encrypt_data(original)
|
| 66 |
+
decrypted = decrypt_data(encrypted)
|
| 67 |
+
|
| 68 |
+
print(f"Original: {original}")
|
| 69 |
+
print(f"Encrypted: {encrypted}")
|
| 70 |
+
print(f"Decrypted: {decrypted}")
|
| 71 |
+
assert original == decrypted
|
localization.py
ADDED
|
@@ -0,0 +1,83 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# Mappings de localisation (Anglais -> Français)
|
| 2 |
+
# Ce fichier permet de traduire les résultats de l'IA sans modifier les prompts originaux
|
| 3 |
+
# qui doivent rester en anglais pour la performance du modèle.
|
| 4 |
+
|
| 5 |
+
DOMAIN_TRANSLATIONS = {
|
| 6 |
+
'Thoracic': {
|
| 7 |
+
'label': 'Thoracique',
|
| 8 |
+
'description': 'Analyse Radiographique du Thorax'
|
| 9 |
+
},
|
| 10 |
+
'Dermatology': {
|
| 11 |
+
'label': 'Dermatologie',
|
| 12 |
+
'description': 'Analyse Dermatoscope des Lésions Cutanées'
|
| 13 |
+
},
|
| 14 |
+
'Histology': {
|
| 15 |
+
'label': 'Histologie',
|
| 16 |
+
'description': 'Analyse Microscopique (H&E)'
|
| 17 |
+
},
|
| 18 |
+
'Ophthalmology': {
|
| 19 |
+
'label': 'Ophtalmologie',
|
| 20 |
+
'description': 'Fond d\'Oeil (Rétine)'
|
| 21 |
+
},
|
| 22 |
+
'Orthopedics': {
|
| 23 |
+
'label': 'Orthopédie',
|
| 24 |
+
'description': 'Radiographie Osseuse'
|
| 25 |
+
}
|
| 26 |
+
}
|
| 27 |
+
|
| 28 |
+
LABEL_TRANSLATIONS = {
|
| 29 |
+
# --- THORACIC ---
|
| 30 |
+
'Diffuse interstitial opacities or ground-glass pattern (Viral/Atypical Pneumonia)':
|
| 31 |
+
'Opacités interstitielles diffuses ou aspect en verre dépoli (Pneumonie Virale/Atypique)',
|
| 32 |
+
|
| 33 |
+
'Focal alveolar consolidation with air bronchograms (Bacterial Pneumonia)':
|
| 34 |
+
'Condensation alvéolaire focale avec bronchogrammes aériens (Pneumonie Bactérienne)',
|
| 35 |
+
|
| 36 |
+
'Perfectly clear lungs, sharp costophrenic angles, no pathology':
|
| 37 |
+
'Poumons parfaitement clairs, angles costophréniques nets, aucune pathologie',
|
| 38 |
+
|
| 39 |
+
'Pneumothorax (Lung collapse)': 'Pneumothorax (Décollement de la plèvre)',
|
| 40 |
+
'Pleural Effusion (Fluid)': 'Épanchement Pleural (Liquide)',
|
| 41 |
+
'Cardiomegaly (Enlarged heart)': 'Cardiomégalie (Cœur élargi)',
|
| 42 |
+
'Pulmonary Edema': 'Œdème Pulmonaire',
|
| 43 |
+
'Lung Nodule or Mass': 'Nodule ou Masse Pulmonaire',
|
| 44 |
+
'Atelectasis (Lung collapse)': 'Atélectasie (Affaissement pulmonaire)',
|
| 45 |
+
|
| 46 |
+
# --- DERMATOLOGY ---
|
| 47 |
+
'A healthy skin area without lesion': 'Zone de peau saine sans lésion',
|
| 48 |
+
'A benign nevus (mole) regular, symmetrical and homogeneous': 'Nævus bénin (grain de beauté) régulier, symétrique et homogène',
|
| 49 |
+
'A seborrheic keratosis (benign warty lesion)': 'Kératose séborrhéique (lésion verruqueuse bénigne)',
|
| 50 |
+
'A malignant melanoma with asymmetry, irregular borders and multiple colors': 'Mélanome malin (Asymétrie, Bords irréguliers, Couleurs multiples)',
|
| 51 |
+
'A basal cell carcinoma (pearly or ulcerated lesion)': 'Carcinome basocellulaire (lésion perlée ou ulcérée)',
|
| 52 |
+
'A squamous cell carcinoma (crusty or budding lesion)': 'Carcinome épidermoïde (lésion croûteuse ou bourgeonnante)',
|
| 53 |
+
'A non-specific inflammatory skin lesion': 'Lésion cutanée inflammatoire non spécifique',
|
| 54 |
+
|
| 55 |
+
# --- ORTHOPEDICS ---
|
| 56 |
+
'Severe osteoarthritis with bone-on-bone contact and large osteophytes (Grade 4)': 'Arthrose sévère avec contact os-contre-os et ostéophytes importants (Grade 4)',
|
| 57 |
+
'Moderate osteoarthritis with definite joint space narrowing (Grade 2-3)': 'Arthrose modérée avec pincement articulaire net (Grade 2-3)',
|
| 58 |
+
'Normal knee joint with preserved joint space and no osteophytes (Grade 0-1)': 'Genou normal, interligne articulaire préservé (Grade 0-1)',
|
| 59 |
+
'Total knee arthroplasty (TKA) with metallic implant': 'Prothèse totale de genou (implant métallique)',
|
| 60 |
+
'Acute knee fracture or dislocation': 'Fracture ou luxation aiguë du genou',
|
| 61 |
+
'Other x-ray view (Chest, Hand, Foot, Pediatric) - OUT OF DISTRIBUTION': 'Autre vue radiographique (Hors périmètre)',
|
| 62 |
+
'A knee x-ray view (Knee Joint)': 'Radiographie du Genou'
|
| 63 |
+
}
|
| 64 |
+
|
| 65 |
+
def localize_result(result_json):
|
| 66 |
+
"""
|
| 67 |
+
Traduit les résultats bruts (Anglais) en Français
|
| 68 |
+
en utilisant les dictionnaires de mapping.
|
| 69 |
+
"""
|
| 70 |
+
# 1. Localiser le Domaine
|
| 71 |
+
domain_key = result_json['domain']['label']
|
| 72 |
+
if domain_key in DOMAIN_TRANSLATIONS:
|
| 73 |
+
result_json['domain']['label'] = DOMAIN_TRANSLATIONS[domain_key]['label']
|
| 74 |
+
result_json['domain']['description'] = DOMAIN_TRANSLATIONS[domain_key]['description']
|
| 75 |
+
|
| 76 |
+
# 2. Localiser les Résultats Spécifiques
|
| 77 |
+
for item in result_json['specific']:
|
| 78 |
+
original_label = item['label']
|
| 79 |
+
if original_label in LABEL_TRANSLATIONS:
|
| 80 |
+
item['label'] = LABEL_TRANSLATIONS[original_label]
|
| 81 |
+
# Si pas de traduction trouvée, on garde l'anglais (fallback)
|
| 82 |
+
|
| 83 |
+
return result_json
|
requirements.txt
ADDED
|
@@ -0,0 +1,21 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
fastapi
|
| 2 |
+
uvicorn
|
| 3 |
+
python-multipart
|
| 4 |
+
requests
|
| 5 |
+
transformers
|
| 6 |
+
torch
|
| 7 |
+
Pillow
|
| 8 |
+
sentencepiece
|
| 9 |
+
pydicom
|
| 10 |
+
numpy
|
| 11 |
+
grad-cam
|
| 12 |
+
python-jose[cryptography]
|
| 13 |
+
passlib
|
| 14 |
+
argon2-cffi
|
| 15 |
+
bcrypt==4.0.1
|
| 16 |
+
cryptography
|
| 17 |
+
python-dotenv
|
| 18 |
+
opencv-python
|
| 19 |
+
python-swiftclient
|
| 20 |
+
protobuf
|
| 21 |
+
huggingface_hub
|
storage.py
ADDED
|
@@ -0,0 +1,92 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import os
|
| 2 |
+
import abc
|
| 3 |
+
from datetime import datetime
|
| 4 |
+
|
| 5 |
+
class StorageProvider(abc.ABC):
|
| 6 |
+
@abc.abstractmethod
|
| 7 |
+
def save_file(self, file_bytes: bytes, filename: str) -> str:
|
| 8 |
+
pass
|
| 9 |
+
|
| 10 |
+
@abc.abstractmethod
|
| 11 |
+
def get_file(self, filename: str) -> bytes:
|
| 12 |
+
pass
|
| 13 |
+
|
| 14 |
+
class LocalStorage(StorageProvider):
|
| 15 |
+
def __init__(self, base_dir="data_storage"):
|
| 16 |
+
self.base_dir = base_dir
|
| 17 |
+
os.makedirs(base_dir, exist_ok=True)
|
| 18 |
+
|
| 19 |
+
def save_file(self, file_bytes: bytes, filename: str) -> str:
|
| 20 |
+
# Prepend timestamp to avoid collision
|
| 21 |
+
ts = datetime.now().strftime("%Y%m%d_%H%M%S")
|
| 22 |
+
safe_name = f"{ts}_{filename}"
|
| 23 |
+
path = os.path.join(self.base_dir, safe_name)
|
| 24 |
+
with open(path, "wb") as f:
|
| 25 |
+
f.write(file_bytes)
|
| 26 |
+
return path
|
| 27 |
+
|
| 28 |
+
def get_file(self, filename: str) -> bytes:
|
| 29 |
+
path = os.path.join(self.base_dir, filename)
|
| 30 |
+
if not os.path.exists(path):
|
| 31 |
+
return None
|
| 32 |
+
with open(path, "rb") as f:
|
| 33 |
+
return f.read()
|
| 34 |
+
|
| 35 |
+
class SwiftStorage(StorageProvider):
|
| 36 |
+
"""
|
| 37 |
+
OpenStack Swift Storage Provider.
|
| 38 |
+
Requires python-swiftclient installed.
|
| 39 |
+
"""
|
| 40 |
+
def __init__(self, auth_url, username, password, project_name, container_name="elephmind_images"):
|
| 41 |
+
# Import here to avoid error on Windows if not installed
|
| 42 |
+
try:
|
| 43 |
+
from swiftclient import Connection
|
| 44 |
+
except ImportError:
|
| 45 |
+
raise ImportError("python-swiftclient not installed!")
|
| 46 |
+
|
| 47 |
+
self.container_name = container_name
|
| 48 |
+
self.conn = Connection(
|
| 49 |
+
authurl=auth_url,
|
| 50 |
+
user=username,
|
| 51 |
+
key=password,
|
| 52 |
+
tenant_name=project_name,
|
| 53 |
+
auth_version='3',
|
| 54 |
+
os_options={'user_domain_name': 'Default', 'project_domain_name': 'Default'}
|
| 55 |
+
)
|
| 56 |
+
# Ensure container exists
|
| 57 |
+
try:
|
| 58 |
+
self.conn.put_container(self.container_name)
|
| 59 |
+
except Exception as e:
|
| 60 |
+
print(f"Swift Connection Error: {e}")
|
| 61 |
+
|
| 62 |
+
def save_file(self, file_bytes: bytes, filename: str) -> str:
|
| 63 |
+
ts = datetime.now().strftime("%Y%m%d_%H%M%S")
|
| 64 |
+
safe_name = f"{ts}_{filename}"
|
| 65 |
+
self.conn.put_object(
|
| 66 |
+
self.container_name,
|
| 67 |
+
safe_name,
|
| 68 |
+
contents=file_bytes,
|
| 69 |
+
content_type='application/octet-stream'
|
| 70 |
+
)
|
| 71 |
+
return f"swift://{self.container_name}/{safe_name}"
|
| 72 |
+
|
| 73 |
+
def get_file(self, filename: str) -> bytes:
|
| 74 |
+
# filename could be safe_name
|
| 75 |
+
# logic to extract key if needed
|
| 76 |
+
try:
|
| 77 |
+
_, obj = self.conn.get_object(self.container_name, filename)
|
| 78 |
+
return obj
|
| 79 |
+
except Exception:
|
| 80 |
+
return None
|
| 81 |
+
|
| 82 |
+
# Factory
|
| 83 |
+
def get_storage_provider(config_mode="LOCAL"):
|
| 84 |
+
if config_mode == "OPENSTACK":
|
| 85 |
+
return SwiftStorage(
|
| 86 |
+
auth_url=os.getenv("OS_AUTH_URL"),
|
| 87 |
+
username=os.getenv("OS_USERNAME"),
|
| 88 |
+
password=os.getenv("OS_PASSWORD"),
|
| 89 |
+
project_name=os.getenv("OS_PROJECT_NAME")
|
| 90 |
+
)
|
| 91 |
+
else:
|
| 92 |
+
return LocalStorage()
|