Drug-Gemma / src /predict.py
Jay Prajapati
v1.0.0
b8ffacb
from src.model import tdc_prompts, txgemma_predict
def predict_kiba_score(drug_smile, amino_acid):
TDC_PROMPT = tdc_prompts["KIBA"].replace("{Drug SMILES}", drug_smile).replace("{Target amino acid sequence}", amino_acid)
response = txgemma_predict(TDC_PROMPT)
return response.split("Answer:")[1].strip()
def predict(task, drug_smile, amino_acid=None):
if task == "KIBA Score":
if amino_acid is None:
raise ValueError("amino_acid parameter is required for KIBA task")
kiba_score = predict_kiba_score(drug_smile, amino_acid)
return f"{kiba_score} Binding Affinity On Scale of 0-1000"
if task == "Skin Reaction":
TDC_PROMPT = tdc_prompts["Skin_Reaction"].replace("{Drug SMILES}", drug_smile)
response = txgemma_predict(TDC_PROMPT).split("Answer:")[1].strip()
if "(A)" in response: response = f"{drug_smile} does not cause a skin reaction!"
elif "(B)" in response: response = f"{drug_smile} causes a skin reaction!"
return response
if task == "Liver Safety":
TDC_PROMPT = tdc_prompts["DILI"].replace("{Drug SMILES}", drug_smile)
response = txgemma_predict(TDC_PROMPT).split("Answer:")[1].strip()
if "(A)" in response: response = f"{drug_smile} does not damage a liver!"
elif "(B)" in response: response = f"{drug_smile} can damage a liver!"
return response