Spaces:
Sleeping
Sleeping
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Parent(s):
Deploy to Space
Browse files- .gitattributes +35 -0
- .github/workflows/deploy-to-spaces.yml +31 -0
- LICENSE +201 -0
- README.md +13 -0
- app.py +395 -0
- images/PMC1156947_3.jpg +0 -0
- models/column_detection.pt +3 -0
- models/column_segmentation.pt +3 -0
- models/row_detection.pt +3 -0
- models/row_segmentation.pt +3 -0
- models/table_detection.pt +3 -0
- requirements.txt +3 -0
- usage.py +50 -0
.gitattributes
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*.7z filter=lfs diff=lfs merge=lfs -text
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*.arrow filter=lfs diff=lfs merge=lfs -text
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*.bin filter=lfs diff=lfs merge=lfs -text
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*.bz2 filter=lfs diff=lfs merge=lfs -text
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*.ckpt filter=lfs diff=lfs merge=lfs -text
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*.ftz filter=lfs diff=lfs merge=lfs -text
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*.gz filter=lfs diff=lfs merge=lfs -text
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*.h5 filter=lfs diff=lfs merge=lfs -text
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*.joblib filter=lfs diff=lfs merge=lfs -text
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*.lfs.* filter=lfs diff=lfs merge=lfs -text
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*.mlmodel filter=lfs diff=lfs merge=lfs -text
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*.model filter=lfs diff=lfs merge=lfs -text
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*.msgpack filter=lfs diff=lfs merge=lfs -text
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*.npy filter=lfs diff=lfs merge=lfs -text
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*.npz filter=lfs diff=lfs merge=lfs -text
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*.onnx filter=lfs diff=lfs merge=lfs -text
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*.parquet filter=lfs diff=lfs merge=lfs -text
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*.pb filter=lfs diff=lfs merge=lfs -text
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*.pickle filter=lfs diff=lfs merge=lfs -text
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*.pt filter=lfs diff=lfs merge=lfs -text
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*.pth filter=lfs diff=lfs merge=lfs -text
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*.rar filter=lfs diff=lfs merge=lfs -text
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*.safetensors filter=lfs diff=lfs merge=lfs -text
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saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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*.tar.* filter=lfs diff=lfs merge=lfs -text
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*.tar filter=lfs diff=lfs merge=lfs -text
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*.tflite filter=lfs diff=lfs merge=lfs -text
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*.tgz filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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.github/workflows/deploy-to-spaces.yml
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name: Deploy to Spaces
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on:
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push:
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branches: [ hfspace ]
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jobs:
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deploy:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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with:
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fetch-depth: 1
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ref: hfspace
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lfs: true
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- name: Configure Git
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run: |
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git config --global user.email "github-actions[bot]@users.noreply.github.com"
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git config --global user.name "github-actions[bot]"
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git lfs install
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- name: Push to Space
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env:
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HF_TOKEN: ${{ secrets.HF_TOKEN }}
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run: |
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git checkout --orphan temp_branch
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git add -A
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git commit -m "Deploy to Space"
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git lfs push --all https://jayllfpt:$HF_TOKEN@huggingface.co/spaces/jayllfpt/table2html temp_branch
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git push -f https://jayllfpt:$HF_TOKEN@huggingface.co/spaces/jayllfpt/table2html temp_branch:main
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LICENSE
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other commercial damages or losses), even if such Contributor
|
| 163 |
+
has been advised of the possibility of such damages.
|
| 164 |
+
|
| 165 |
+
9. Accepting Warranty or Additional Liability. While redistributing
|
| 166 |
+
the Work or Derivative Works thereof, You may choose to offer,
|
| 167 |
+
and charge a fee for, acceptance of support, warranty, indemnity,
|
| 168 |
+
or other liability obligations and/or rights consistent with this
|
| 169 |
+
License. However, in accepting such obligations, You may act only
|
| 170 |
+
on Your own behalf and on Your sole responsibility, not on behalf
|
| 171 |
+
of any other Contributor, and only if You agree to indemnify,
|
| 172 |
+
defend, and hold each Contributor harmless for any liability
|
| 173 |
+
incurred by, or claims asserted against, such Contributor by reason
|
| 174 |
+
of your accepting any such warranty or additional liability.
|
| 175 |
+
|
| 176 |
+
END OF TERMS AND CONDITIONS
|
| 177 |
+
|
| 178 |
+
APPENDIX: How to apply the Apache License to your work.
|
| 179 |
+
|
| 180 |
+
To apply the Apache License to your work, attach the following
|
| 181 |
+
boilerplate notice, with the fields enclosed by brackets "[]"
|
| 182 |
+
replaced with your own identifying information. (Don't include
|
| 183 |
+
the brackets!) The text should be enclosed in the appropriate
|
| 184 |
+
comment syntax for the file format. We also recommend that a
|
| 185 |
+
file or class name and description of purpose be included on the
|
| 186 |
+
same "printed page" as the copyright notice for easier
|
| 187 |
+
identification within third-party archives.
|
| 188 |
+
|
| 189 |
+
Copyright [yyyy] [name of copyright owner]
|
| 190 |
+
|
| 191 |
+
Licensed under the Apache License, Version 2.0 (the "License");
|
| 192 |
+
you may not use this file except in compliance with the License.
|
| 193 |
+
You may obtain a copy of the License at
|
| 194 |
+
|
| 195 |
+
http://www.apache.org/licenses/LICENSE-2.0
|
| 196 |
+
|
| 197 |
+
Unless required by applicable law or agreed to in writing, software
|
| 198 |
+
distributed under the License is distributed on an "AS IS" BASIS,
|
| 199 |
+
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
| 200 |
+
See the License for the specific language governing permissions and
|
| 201 |
+
limitations under the License.
|
README.md
ADDED
|
@@ -0,0 +1,13 @@
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|
| 1 |
+
---
|
| 2 |
+
title: table2html
|
| 3 |
+
emoji: 🐧
|
| 4 |
+
colorFrom: pink
|
| 5 |
+
colorTo: blue
|
| 6 |
+
sdk: streamlit
|
| 7 |
+
sdk_version: 1.40.1
|
| 8 |
+
app_file: app.py
|
| 9 |
+
pinned: false
|
| 10 |
+
license: apache-2.0
|
| 11 |
+
---
|
| 12 |
+
|
| 13 |
+
Check out the configuration reference at https://huggingface.co/docs/hub/spaces-config-reference
|
app.py
ADDED
|
@@ -0,0 +1,395 @@
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|
|
|
|
|
| 1 |
+
import cv2
|
| 2 |
+
import streamlit as st
|
| 3 |
+
from table2html import Table2HTML
|
| 4 |
+
from table2html.source import visualize_boxes, crop_image
|
| 5 |
+
import numpy as np
|
| 6 |
+
import time
|
| 7 |
+
import os
|
| 8 |
+
import tempfile
|
| 9 |
+
import fitz # PyMuPDF
|
| 10 |
+
from PIL import Image
|
| 11 |
+
|
| 12 |
+
|
| 13 |
+
default_configs = {
|
| 14 |
+
'table_detection': {
|
| 15 |
+
'model_path': 'models/table_detection.pt',
|
| 16 |
+
'confidence_threshold': 0.25,
|
| 17 |
+
'iou_threshold': 0.7
|
| 18 |
+
},
|
| 19 |
+
'column_detection': {
|
| 20 |
+
'model_path': 'models/column_detection.pt',
|
| 21 |
+
'confidence_threshold': 0.25,
|
| 22 |
+
'iou_threshold': 0.7,
|
| 23 |
+
'task': 'detect'
|
| 24 |
+
},
|
| 25 |
+
'row_detection': {
|
| 26 |
+
'model_path': 'models/row_detection.pt',
|
| 27 |
+
'confidence_threshold': 0.25,
|
| 28 |
+
'iou_threshold': 0.7,
|
| 29 |
+
'task': 'detect'
|
| 30 |
+
},
|
| 31 |
+
'table_crop_padding': 15
|
| 32 |
+
}
|
| 33 |
+
|
| 34 |
+
thumbnail_columns = 5
|
| 35 |
+
|
| 36 |
+
|
| 37 |
+
def initialize_session_state():
|
| 38 |
+
if 'table_detections' not in st.session_state:
|
| 39 |
+
st.session_state.table_detections = []
|
| 40 |
+
if 'structure_detections' not in st.session_state:
|
| 41 |
+
st.session_state.structure_detections = []
|
| 42 |
+
if 'cropped_tables' not in st.session_state:
|
| 43 |
+
st.session_state.cropped_tables = []
|
| 44 |
+
if 'html_tables' not in st.session_state:
|
| 45 |
+
st.session_state.html_tables = []
|
| 46 |
+
if 'detection_data' not in st.session_state:
|
| 47 |
+
st.session_state.detection_data = []
|
| 48 |
+
if 'current_image' not in st.session_state:
|
| 49 |
+
st.session_state.current_image = None
|
| 50 |
+
if 'configs' not in st.session_state:
|
| 51 |
+
st.session_state.configs = default_configs
|
| 52 |
+
|
| 53 |
+
|
| 54 |
+
def clear_results():
|
| 55 |
+
st.session_state.table_detections = []
|
| 56 |
+
st.session_state.structure_detections = []
|
| 57 |
+
st.session_state.cropped_tables = []
|
| 58 |
+
st.session_state.html_tables = []
|
| 59 |
+
|
| 60 |
+
|
| 61 |
+
def detect_update_results(image, configs):
|
| 62 |
+
table2html = Table2HTML(
|
| 63 |
+
table_detection_config=configs["table_detection"],
|
| 64 |
+
row_detection_config=configs["row_detection"],
|
| 65 |
+
column_detection_config=configs["column_detection"]
|
| 66 |
+
)
|
| 67 |
+
detection_data = table2html(image, configs["table_crop_padding"])
|
| 68 |
+
|
| 69 |
+
if len(detection_data) == 0:
|
| 70 |
+
st.warning("No tables detected on this page.")
|
| 71 |
+
return
|
| 72 |
+
|
| 73 |
+
# Clear previous results
|
| 74 |
+
st.session_state.detection_data = detection_data
|
| 75 |
+
|
| 76 |
+
for data in detection_data:
|
| 77 |
+
# Store table detection visualization
|
| 78 |
+
table_detection = visualize_boxes(
|
| 79 |
+
image.copy(),
|
| 80 |
+
[data["table_bbox"]],
|
| 81 |
+
color=(0, 0, 255),
|
| 82 |
+
thickness=2
|
| 83 |
+
)
|
| 84 |
+
st.session_state.table_detections.append(table_detection)
|
| 85 |
+
|
| 86 |
+
# Store cropped table
|
| 87 |
+
cropped_table = crop_image(
|
| 88 |
+
image, data["table_bbox"], configs["table_crop_padding"])
|
| 89 |
+
st.session_state.cropped_tables.append(cropped_table)
|
| 90 |
+
|
| 91 |
+
# Store structure detection visualization
|
| 92 |
+
structure_detection = visualize_boxes(
|
| 93 |
+
cropped_table.copy(),
|
| 94 |
+
[cell['box'] for cell in data['cells']],
|
| 95 |
+
color=(0, 255, 0),
|
| 96 |
+
thickness=1
|
| 97 |
+
)
|
| 98 |
+
st.session_state.structure_detections.append(structure_detection)
|
| 99 |
+
|
| 100 |
+
# Store HTML
|
| 101 |
+
st.session_state.html_tables.append(data["html"])
|
| 102 |
+
|
| 103 |
+
|
| 104 |
+
def inference_one_image(image, configs):
|
| 105 |
+
clear_results()
|
| 106 |
+
with st.spinner("Processing..."):
|
| 107 |
+
start_time = time.time()
|
| 108 |
+
|
| 109 |
+
try:
|
| 110 |
+
# Update process_image call to include all model paths
|
| 111 |
+
detect_update_results(image, configs)
|
| 112 |
+
|
| 113 |
+
# Clean up temporary files if using custom models
|
| 114 |
+
for model_type, config in configs.items():
|
| 115 |
+
if f"{model_type}_option" in st.session_state and \
|
| 116 |
+
st.session_state[f"{model_type}_option"] == "custom":
|
| 117 |
+
os.unlink(config["model_path"])
|
| 118 |
+
|
| 119 |
+
execution_time = time.time() - start_time
|
| 120 |
+
st.success(
|
| 121 |
+
f"Processing completed in {execution_time:.2f} seconds")
|
| 122 |
+
except Exception as e:
|
| 123 |
+
st.error(f"Error processing image: {str(e)}")
|
| 124 |
+
# Clean up temporary files on error
|
| 125 |
+
for model_type, config in configs.items():
|
| 126 |
+
if f"{model_type}_option" in st.session_state and \
|
| 127 |
+
st.session_state[f"{model_type}_option"] == "custom":
|
| 128 |
+
os.unlink(config["model_path"])
|
| 129 |
+
|
| 130 |
+
|
| 131 |
+
def main():
|
| 132 |
+
initialize_session_state()
|
| 133 |
+
st.set_page_config(layout="wide")
|
| 134 |
+
|
| 135 |
+
# Add page selection
|
| 136 |
+
page = st.sidebar.radio("Select Page", ["Inference", "Configuration"])
|
| 137 |
+
|
| 138 |
+
if page == "Inference":
|
| 139 |
+
st.title("Table Detection and Recognition")
|
| 140 |
+
|
| 141 |
+
# Image Upload Section
|
| 142 |
+
st.subheader("Image Upload")
|
| 143 |
+
uploaded_file = st.file_uploader(
|
| 144 |
+
"Choose an image or PDF file",
|
| 145 |
+
type=['jpg', 'jpeg', 'png', 'pdf']
|
| 146 |
+
)
|
| 147 |
+
|
| 148 |
+
# Get configurations from session state
|
| 149 |
+
configs = st.session_state.get('configs', default_configs)
|
| 150 |
+
|
| 151 |
+
current_image = None
|
| 152 |
+
|
| 153 |
+
if uploaded_file is not None and all(configs.values()):
|
| 154 |
+
if uploaded_file.type == "application/pdf":
|
| 155 |
+
# Convert PDF to images
|
| 156 |
+
pdf_bytes = uploaded_file.read()
|
| 157 |
+
pdf_images = []
|
| 158 |
+
|
| 159 |
+
doc = fitz.open(stream=pdf_bytes, filetype="pdf")
|
| 160 |
+
|
| 161 |
+
for page_num in range(doc.page_count):
|
| 162 |
+
page = doc[page_num]
|
| 163 |
+
pix = page.get_pixmap(dpi=200)
|
| 164 |
+
pil_image = Image.frombytes(
|
| 165 |
+
"RGB", [pix.width, pix.height], pix.samples)
|
| 166 |
+
img_array = np.array(pil_image)
|
| 167 |
+
pdf_images.append(img_array)
|
| 168 |
+
|
| 169 |
+
# Show thumbnails
|
| 170 |
+
st.write("Select a page to process:")
|
| 171 |
+
cols = st.columns(thumbnail_columns)
|
| 172 |
+
for idx, img in enumerate(pdf_images):
|
| 173 |
+
with cols[idx % thumbnail_columns]:
|
| 174 |
+
st.image(img, width=150, use_container_width=True)
|
| 175 |
+
if st.button(f"Process Page {idx+1}"):
|
| 176 |
+
current_image = img
|
| 177 |
+
st.session_state.current_image = img
|
| 178 |
+
inference_one_image(
|
| 179 |
+
current_image, configs)
|
| 180 |
+
else:
|
| 181 |
+
# Handle regular image upload
|
| 182 |
+
file_bytes = np.asarray(
|
| 183 |
+
bytearray(uploaded_file.read()), dtype=np.uint8)
|
| 184 |
+
current_image = cv2.imdecode(file_bytes, cv2.IMREAD_COLOR)
|
| 185 |
+
st.session_state.current_image = current_image
|
| 186 |
+
|
| 187 |
+
# Process button
|
| 188 |
+
if st.button("Process Image"):
|
| 189 |
+
inference_one_image(
|
| 190 |
+
current_image, configs)
|
| 191 |
+
|
| 192 |
+
if len(st.session_state.cropped_tables) > 0:
|
| 193 |
+
st.header("Results")
|
| 194 |
+
|
| 195 |
+
# General Results Section
|
| 196 |
+
st.subheader("General Results")
|
| 197 |
+
gen_img_col, gen_html_col = st.columns([1, 1])
|
| 198 |
+
|
| 199 |
+
with gen_img_col:
|
| 200 |
+
show_all_detections = st.toggle(
|
| 201 |
+
"Show Table Detections",
|
| 202 |
+
value=False,
|
| 203 |
+
key="show_all_detections"
|
| 204 |
+
)
|
| 205 |
+
|
| 206 |
+
# Display either original image or detection visualization
|
| 207 |
+
if show_all_detections and len(st.session_state.detection_data) > 0:
|
| 208 |
+
# Create visualization with all table detections
|
| 209 |
+
all_tables_viz = visualize_boxes(
|
| 210 |
+
st.session_state.current_image.copy(),
|
| 211 |
+
[data["table_bbox"]
|
| 212 |
+
for data in st.session_state.detection_data],
|
| 213 |
+
color=(0, 0, 255),
|
| 214 |
+
thickness=2
|
| 215 |
+
)
|
| 216 |
+
st.image(
|
| 217 |
+
all_tables_viz,
|
| 218 |
+
caption="All Table Detections",
|
| 219 |
+
use_container_width=True
|
| 220 |
+
)
|
| 221 |
+
else:
|
| 222 |
+
st.image(
|
| 223 |
+
st.session_state.current_image,
|
| 224 |
+
caption="Original Image",
|
| 225 |
+
use_container_width=True
|
| 226 |
+
)
|
| 227 |
+
|
| 228 |
+
with gen_html_col:
|
| 229 |
+
st.markdown("### All HTML Tables:")
|
| 230 |
+
# Combine all HTML tables
|
| 231 |
+
all_html = "\n".join(st.session_state.html_tables)
|
| 232 |
+
st.markdown(all_html, unsafe_allow_html=True)
|
| 233 |
+
|
| 234 |
+
# Download all HTML tables
|
| 235 |
+
combined_html = "<!DOCTYPE html><html><body>\n" + all_html + "\n</body></html>"
|
| 236 |
+
st.download_button(
|
| 237 |
+
label="Download All Tables HTML",
|
| 238 |
+
data=combined_html,
|
| 239 |
+
file_name="all_tables.html",
|
| 240 |
+
mime="text/html",
|
| 241 |
+
key="download_all_btn"
|
| 242 |
+
)
|
| 243 |
+
|
| 244 |
+
st.divider()
|
| 245 |
+
|
| 246 |
+
# Detailed Results Section
|
| 247 |
+
show_details = st.toggle("Show Detailed Results", value=False)
|
| 248 |
+
|
| 249 |
+
if show_details:
|
| 250 |
+
st.subheader("Detailed Results")
|
| 251 |
+
for idx in range(len(st.session_state.cropped_tables)):
|
| 252 |
+
st.subheader(f"Table {idx + 1}")
|
| 253 |
+
|
| 254 |
+
# Visualization controls for each table
|
| 255 |
+
control_col1, control_col2 = st.columns([1, 1])
|
| 256 |
+
with control_col1:
|
| 257 |
+
show_table_detection = st.toggle(
|
| 258 |
+
f"Show Table Detection for Table {idx + 1}",
|
| 259 |
+
value=False,
|
| 260 |
+
key=f"table_detection_{idx}"
|
| 261 |
+
)
|
| 262 |
+
with control_col2:
|
| 263 |
+
show_structure_detection = st.toggle(
|
| 264 |
+
f"Show Structure Detection for Table {idx + 1}",
|
| 265 |
+
value=False,
|
| 266 |
+
key=f"structure_detection_{idx}"
|
| 267 |
+
)
|
| 268 |
+
|
| 269 |
+
# Create columns for each table result
|
| 270 |
+
img_col, html_col = st.columns([1, 1])
|
| 271 |
+
|
| 272 |
+
with img_col:
|
| 273 |
+
# Show either the cropped table or visualizations based on toggles
|
| 274 |
+
if show_table_detection:
|
| 275 |
+
st.image(
|
| 276 |
+
st.session_state.table_detections[idx],
|
| 277 |
+
caption="Table Detection",
|
| 278 |
+
use_container_width=True
|
| 279 |
+
)
|
| 280 |
+
if show_structure_detection:
|
| 281 |
+
st.image(
|
| 282 |
+
st.session_state.structure_detections[idx],
|
| 283 |
+
caption="Structure Detection",
|
| 284 |
+
use_container_width=True
|
| 285 |
+
)
|
| 286 |
+
if not show_table_detection and not show_structure_detection:
|
| 287 |
+
st.image(
|
| 288 |
+
st.session_state.cropped_tables[idx],
|
| 289 |
+
caption="Cropped Table",
|
| 290 |
+
use_container_width=True
|
| 291 |
+
)
|
| 292 |
+
|
| 293 |
+
with html_col:
|
| 294 |
+
st.markdown("### HTML Output:")
|
| 295 |
+
st.markdown(
|
| 296 |
+
st.session_state.html_tables[idx],
|
| 297 |
+
unsafe_allow_html=True
|
| 298 |
+
)
|
| 299 |
+
st.download_button(
|
| 300 |
+
label=f"Download Table {idx + 1} HTML",
|
| 301 |
+
data=st.session_state.html_tables[idx],
|
| 302 |
+
file_name=f"table_{idx + 1}.html",
|
| 303 |
+
mime="text/html",
|
| 304 |
+
key=f"download_btn_{idx}"
|
| 305 |
+
)
|
| 306 |
+
|
| 307 |
+
st.divider()
|
| 308 |
+
|
| 309 |
+
else: # Configuration page
|
| 310 |
+
st.title("Model Configuration")
|
| 311 |
+
|
| 312 |
+
# Model selection options
|
| 313 |
+
model_types = ["Table Detection", "Column Detection", "Row Detection"]
|
| 314 |
+
configs = {} # Store both paths and thresholds
|
| 315 |
+
|
| 316 |
+
for idx, model_type in enumerate(model_types):
|
| 317 |
+
st.markdown(f"### {model_type}")
|
| 318 |
+
key_prefix = model_type.lower().replace(" ", "_")
|
| 319 |
+
|
| 320 |
+
# Model file selection
|
| 321 |
+
model_option = st.radio(
|
| 322 |
+
f"Choose {model_type} Model",
|
| 323 |
+
options=["default", "custom"],
|
| 324 |
+
horizontal=True,
|
| 325 |
+
key=f"{key_prefix}_option"
|
| 326 |
+
)
|
| 327 |
+
|
| 328 |
+
if model_option == "default":
|
| 329 |
+
default_path = f"models/{key_prefix}.pt"
|
| 330 |
+
configs[key_prefix] = {"model_path": default_path}
|
| 331 |
+
st.info(f"Using default model: {default_path}")
|
| 332 |
+
else:
|
| 333 |
+
model_upload = st.file_uploader(
|
| 334 |
+
f"Choose {model_type} Model File (.pt)",
|
| 335 |
+
type=['pt'],
|
| 336 |
+
key=f"{key_prefix}_upload"
|
| 337 |
+
)
|
| 338 |
+
if model_upload:
|
| 339 |
+
with tempfile.NamedTemporaryFile(delete=False, suffix='.pt') as tmp_file:
|
| 340 |
+
tmp_file.write(model_upload.getvalue())
|
| 341 |
+
configs[key_prefix] = {
|
| 342 |
+
"model_path": tmp_file.name}
|
| 343 |
+
else:
|
| 344 |
+
configs[key_prefix] = {"model_path": None}
|
| 345 |
+
st.warning(
|
| 346 |
+
f"Please upload a {model_type.lower()} model file")
|
| 347 |
+
|
| 348 |
+
# Add threshold controls
|
| 349 |
+
thresh_col1, thresh_col2 = st.columns(2)
|
| 350 |
+
with thresh_col1:
|
| 351 |
+
conf_threshold = st.slider(
|
| 352 |
+
f"{model_type} Confidence Threshold",
|
| 353 |
+
min_value=0.0,
|
| 354 |
+
max_value=1.0,
|
| 355 |
+
value=0.25,
|
| 356 |
+
step=0.05,
|
| 357 |
+
key=f"{key_prefix}_conf_threshold"
|
| 358 |
+
)
|
| 359 |
+
with thresh_col2:
|
| 360 |
+
iou_threshold = st.slider(
|
| 361 |
+
f"{model_type} IOU Threshold",
|
| 362 |
+
min_value=0.0,
|
| 363 |
+
max_value=1.0,
|
| 364 |
+
value=0.7,
|
| 365 |
+
step=0.05,
|
| 366 |
+
key=f"{key_prefix}_iou_threshold"
|
| 367 |
+
)
|
| 368 |
+
|
| 369 |
+
if configs[key_prefix]["model_path"]:
|
| 370 |
+
configs[key_prefix].update({
|
| 371 |
+
"confidence_threshold": conf_threshold,
|
| 372 |
+
"iou_threshold": iou_threshold
|
| 373 |
+
})
|
| 374 |
+
# Add task field for row and column detection
|
| 375 |
+
if key_prefix in ["column_detection", "row_detection"]:
|
| 376 |
+
configs[key_prefix]["task"] = "detect"
|
| 377 |
+
|
| 378 |
+
st.divider()
|
| 379 |
+
|
| 380 |
+
# Padding input below the model configurations
|
| 381 |
+
table_crop_padding = st.number_input(
|
| 382 |
+
"Table Crop Padding",
|
| 383 |
+
value=15,
|
| 384 |
+
min_value=0,
|
| 385 |
+
max_value=100
|
| 386 |
+
)
|
| 387 |
+
|
| 388 |
+
# Save configurations to session state
|
| 389 |
+
if st.button("Save Configuration"):
|
| 390 |
+
st.session_state.configs = configs
|
| 391 |
+
st.success("Configuration saved successfully!")
|
| 392 |
+
|
| 393 |
+
|
| 394 |
+
if __name__ == "__main__":
|
| 395 |
+
main()
|
images/PMC1156947_3.jpg
ADDED
|
models/column_detection.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:7e15f9f0ef4de361d880e359c899e50ee6c0f6d26d9a7dfa41b6d46f94c8817a
|
| 3 |
+
size 40499813
|
models/column_segmentation.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:5d5b57c2b2ab7dfb2b7a05ff41ef4b80d1eceb44274dc1e0acaadf9ba217e916
|
| 3 |
+
size 45142063
|
models/row_detection.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:3fe6d5360016dd2d426d3971578ca6806557e1ee64379c56a97e79ba0d2e2ed1
|
| 3 |
+
size 40499813
|
models/row_segmentation.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:db22b415fd54ff5f32f3b83f05a95ecf3e4093c4a174fc3fceddb2cd4028e12f
|
| 3 |
+
size 45131055
|
models/table_detection.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:a1d3701d0c42ac395423089965a8b6e16e4af292ccc3054ae016ea709833f014
|
| 3 |
+
size 19172627
|
requirements.txt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
table2html
|
| 2 |
+
streamlit
|
| 3 |
+
pymupdf
|
usage.py
ADDED
|
@@ -0,0 +1,50 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
from table2html.source import visualize_boxes
|
| 2 |
+
from table2html.source import crop_image
|
| 3 |
+
from table2html import Table2HTML
|
| 4 |
+
import cv2
|
| 5 |
+
|
| 6 |
+
|
| 7 |
+
table_crop_padding = 15
|
| 8 |
+
|
| 9 |
+
table_config = {
|
| 10 |
+
|
| 11 |
+
}
|
| 12 |
+
|
| 13 |
+
row_config = {
|
| 14 |
+
|
| 15 |
+
}
|
| 16 |
+
|
| 17 |
+
column_config = {
|
| 18 |
+
|
| 19 |
+
}
|
| 20 |
+
|
| 21 |
+
table2html = Table2HTML(table_config, row_config, column_config)
|
| 22 |
+
|
| 23 |
+
image = cv2.imread(
|
| 24 |
+
r"C:\Users\jayll\Downloads\no_tables.jpg")
|
| 25 |
+
|
| 26 |
+
detection_data = table2html(image, table_crop_padding)
|
| 27 |
+
|
| 28 |
+
for i, data in enumerate(detection_data):
|
| 29 |
+
table_image = crop_image(image, data["table_bbox"], table_crop_padding)
|
| 30 |
+
cv2.imwrite(
|
| 31 |
+
"table_detection.jpg",
|
| 32 |
+
visualize_boxes(
|
| 33 |
+
image,
|
| 34 |
+
[data["table_bbox"]],
|
| 35 |
+
color=(0, 0, 255),
|
| 36 |
+
thickness=1
|
| 37 |
+
)
|
| 38 |
+
)
|
| 39 |
+
cv2.imwrite(
|
| 40 |
+
"structure_detection.jpg",
|
| 41 |
+
visualize_boxes(
|
| 42 |
+
table_image,
|
| 43 |
+
[cell['box'] for cell in data['cells']],
|
| 44 |
+
color=(0, 255, 0),
|
| 45 |
+
thickness=1
|
| 46 |
+
)
|
| 47 |
+
)
|
| 48 |
+
|
| 49 |
+
with open(f"table_{i}.html", "w") as f:
|
| 50 |
+
f.write(data["html"])
|