Fix: remove pyc binary files and update gitignore

.gitignore

@@ -0,0 +1 @@
+**/__pycache__/

demo_brainvlm_folder_files.py → app.py

@@ -955,7 +955,7 @@ import copy
 
 # cfg_model_2 = cfg.model_cfg
 # cfg_model_2['ckpt'] = '/home/ynwang/brain_llm/MiniGPT-4/eval_configs/minigpt4_eval_report.yaml'
-model_config.ckpt = '/home/ynwang/brain_llm/MiniGPT-4/minigpt4/ckpt/20250611193/checkpoint_1.pth'
+model_config.ckpt = './checkpoint_1.pth'
 model_2 = model_cls.from_config(model_config).to('cuda:{}'.format(args.gpu_id))
 
 # model_2 = copy.deepcopy(model.to('cpu')).to('cuda:{}'.format(args.gpu_id+1))

checkpoint_0.pth

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:b686015efa2e881ea64245e67ee5f2e55868765389b3e4a38ca3e4dbf73d2e98
+size 313018367

checkpoint_1.pth

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2f5da752c50173f4a198ecf7448561cf07c0e0b0b68bc038ea4f08a0c00fc053
+size 313018687

eval_configs/minigpt4_eval.yaml

@@ -11,7 +11,7 @@ model:
   # ckpt: /home/ynwang/MiniGPT-4/minigpt4/ckpt/lora_128/checkpoint_7.pth
   # ckpt: "/disk1/Data/Medical-Ours/Brain_Tumor_data/ckpt/brain_llm/output/minigpt4_stage2_finetune/20250521154/checkpoint_5.pth"
   # ckpt: "/home/ynwang/brain_llm/MiniGPT-4/minigpt4/ckpt/20250611193/checkpoint_1.pth"
-  ckpt: "/home/ynwang/brain_llm/MiniGPT-4/minigpt4/ckpt/20250211111/checkpoint_0.pth"
+  ckpt: "./checkpoint_0.pth"
 datasets:
   # tcia_classification:
   #   batch_size: 1

minigpt4/configs/models/minigpt4_vicuna0.yaml

@@ -16,7 +16,7 @@ model:
   prompt: ""
 
   # llama_model: "/home/haoran/yinong/mnigpt-4/ckpt/vicuna-7b/"
-  llama_model: "/disk1/Data/Medical-Ours/Brain_Tumor_data/ckpt/models--meta-llama--Llama-3.1-8B-Instruct/snapshots/0e9e39f249a16976918f6564b8830bc894c89659"
+  llama_model: "meta-llama/Llama-3.1-8B-Instruct"
 
 preprocess:
     vis_processor:

requirements.txt

@@ -0,0 +1,32 @@
+--extra-index-url https://download.pytorch.org/whl/cu118
+torch==2.0.0+cu118
+torchaudio==2.0.1+cu118
+torchvision==0.15.1+cu118
+huggingface-hub==0.29.2
+matplotlib==3.7.0
+psutil==5.9.4
+iopath
+pyyaml==6.0
+regex==2022.10.31
+tokenizers==0.20.3
+tqdm==4.64.1
+transformers==4.45.2
+timm==0.6.13
+webdataset==0.2.48
+omegaconf==2.3.0
+opencv-python==4.7.0.72
+decord==0.6.0
+peft==0.2.0
+sentence-transformers
+gradio==4.44.1
+accelerate==1.4.0
+bitsandbytes==0.37.0
+scikit-image
+visual-genome
+wandb
+nibabel==5.3.2
+open_clip_torch==2.31.0
+einops==0.8.1
+monai==1.4.0
+pydicom==2.4.4
+torchio==0.20.19