Upload 2 files

app.py

@@ -38,12 +38,6 @@ Please be patient — takes about 20–30 minutes to process.
                     placeholder="https://github.com/google-deepmind/alphagenome"
                 )
 
-                key_in = gr.Textbox(
-                    label="🔑 Claude API Key",
-                    placeholder="sk-ant-...",
-                    type="password"
-                )
-
                 repo_key_in = gr.Textbox(
                     label="🔐 API Key (optional, for repositories requiring authentication)",
                     placeholder="Enter API key for private repositories",
@@ -67,10 +61,6 @@ Please be patient — takes about 20–30 minutes to process.
                     <div style="font-weight: bold; margin-bottom: 2px;">GitHub URL:</div>
                     <code style="display: block; background: white; padding: 6px 8px; border-radius: 4px; border: 1px solid #ddd; word-break: break-all;">https://github.com/google-deepmind/alphagenome</code>
                 </div>
-                <div style="margin-bottom: 8px;">
-                    <div style="font-weight: bold; margin-bottom: 2px;">Claude API Key:</div>
-                    <code style="display: block; background: white; padding: 6px 8px; border-radius: 4px; border: 1px solid #ddd; word-break: break-all;">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</code>
-                </div>
                 <div>
                     <div style="font-weight: bold; margin-bottom: 2px;">Repo API Key:</div>
                     <code style="display: block; background: white; padding: 6px 8px; border-radius: 4px; border: 1px solid #ddd; word-break: break-all;">AIzaSyDZ-IxStzMSUElDGWS7U9v6BIDr_0WMoO8</code>
@@ -103,13 +93,12 @@ Please be patient — takes about 20–30 minutes to process.
     def fill_example():
         return (
             "https://github.com/google-deepmind/alphagenome",
-            "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",
             "AIzaSyDZ-IxStzMSUElDGWS7U9v6BIDr_0WMoO8",
             ""
         )
 
     # Button click handler
-    def run_pipeline(github_url, repo_api_key, claude_api_key, tutorials_filter):
+    def run_pipeline(github_url, repo_api_key, tutorials_filter):
         """
         Run the Paper2Agent pipeline with the provided inputs.
         """
@@ -124,17 +113,12 @@ Please be patient — takes about 20–30 minutes to process.
                 ui_logs.append("❌ Error: GitHub Repo URL is required")
                 return "\n".join(ui_logs), None, ""
 
-            if not claude_api_key or not claude_api_key.strip():
-                ui_logs.append("❌ Error: Claude API Key is required")
-                return "\n".join(ui_logs), None, ""
-
             # Create Results folder
             results_path = ROOT / "Results"
             results_path.mkdir(parents=True, exist_ok=True)
 
             ui_logs.append(f"🚀 Starting Paper2Agent pipeline...")
             ui_logs.append(f"📘 GitHub Repo: {github_url}")
-            ui_logs.append(f"🔑 Claude API Key: {'*' * (len(claude_api_key) - 4)}{claude_api_key[-4:]}")
 
             if tutorials_filter:
                 ui_logs.append(f"📚 Tutorial Filter: {tutorials_filter}")
@@ -143,9 +127,8 @@ Please be patient — takes about 20–30 minutes to process.
             ui_logs.append("\n" + "="*70)
             yield "\n".join(ui_logs), None, ""
 
-            # Set environment variable for Claude API key (for SDK initialization)
+            # Set environment for subprocess
             env = os.environ.copy()
-            env['ANTHROPIC_API_KEY'] = claude_api_key
             env['PYTHONUNBUFFERED'] = '1'
 
             # Build command with unbuffered Python
@@ -233,13 +216,13 @@ Please be patient — takes about 20–30 minutes to process.
     example_btn.click(
         fn=fill_example,
         inputs=[],
-        outputs=[github_in, key_in, repo_key_in, tutorials_in]
+        outputs=[github_in, repo_key_in, tutorials_in]
     )
 
     # Connect run button
     run_btn.click(
         fn=run_pipeline,
-        inputs=[github_in, repo_key_in, key_in, tutorials_in],
+        inputs=[github_in, repo_key_in, tutorials_in],
         outputs=[logs_out, zip_out, overleaf_out]
     )
 

test.py

@@ -18,7 +18,8 @@ from pathlib import Path
 from utils import copy_project_resources, clone_github_repo, prepare_folder_structure
 from prompts.tasks import step1_environment_setup_and_tutorial_discovery, step2_tutorial_execution, step3_tool_extraction_and_testing, step4_mcp_integration
 
-# ANTHROPIC_API_KEY should be set via environment variable by the caller (app.py)
+# Read API key from environment variable
+api_key_anthropic = os.environ["ANTHROPIC_API_KEY"]
 
 async def fully_automatic(tasks: list, task_descriptions: list = None, log_file_path: str = None):
     options = ClaudeAgentOptions(