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optimizer.py

@@ -409,6 +409,6 @@ def optimize_sequence(sequence: str, organism: str = "Escherichia coli K12",
             use_nsga3 = False
 
     if not use_nsga3:
-        iterations = {"fast": 500, "standard": 1000, "thorough": 2000}.get(quality, 1000)
+        iterations = {"fast": 1000, "standard": 3000, "thorough": 5000}.get(quality, 3000)
         optimizer = SimpleOptimizer(organism, excluded_sites)
         return optimizer.optimize(sequence, is_protein, iterations)