will not load due to hardcoded paths
Browse files- .gitattributes +0 -35
- Arial.ttf +0 -0
- app.py +228 -4
.gitattributes
DELETED
|
@@ -1,35 +0,0 @@
|
|
| 1 |
-
*.7z filter=lfs diff=lfs merge=lfs -text
|
| 2 |
-
*.arrow filter=lfs diff=lfs merge=lfs -text
|
| 3 |
-
*.bin filter=lfs diff=lfs merge=lfs -text
|
| 4 |
-
*.bz2 filter=lfs diff=lfs merge=lfs -text
|
| 5 |
-
*.ckpt filter=lfs diff=lfs merge=lfs -text
|
| 6 |
-
*.ftz filter=lfs diff=lfs merge=lfs -text
|
| 7 |
-
*.gz filter=lfs diff=lfs merge=lfs -text
|
| 8 |
-
*.h5 filter=lfs diff=lfs merge=lfs -text
|
| 9 |
-
*.joblib filter=lfs diff=lfs merge=lfs -text
|
| 10 |
-
*.lfs.* filter=lfs diff=lfs merge=lfs -text
|
| 11 |
-
*.mlmodel filter=lfs diff=lfs merge=lfs -text
|
| 12 |
-
*.model filter=lfs diff=lfs merge=lfs -text
|
| 13 |
-
*.msgpack filter=lfs diff=lfs merge=lfs -text
|
| 14 |
-
*.npy filter=lfs diff=lfs merge=lfs -text
|
| 15 |
-
*.npz filter=lfs diff=lfs merge=lfs -text
|
| 16 |
-
*.onnx filter=lfs diff=lfs merge=lfs -text
|
| 17 |
-
*.ot filter=lfs diff=lfs merge=lfs -text
|
| 18 |
-
*.parquet filter=lfs diff=lfs merge=lfs -text
|
| 19 |
-
*.pb filter=lfs diff=lfs merge=lfs -text
|
| 20 |
-
*.pickle filter=lfs diff=lfs merge=lfs -text
|
| 21 |
-
*.pkl filter=lfs diff=lfs merge=lfs -text
|
| 22 |
-
*.pt filter=lfs diff=lfs merge=lfs -text
|
| 23 |
-
*.pth filter=lfs diff=lfs merge=lfs -text
|
| 24 |
-
*.rar filter=lfs diff=lfs merge=lfs -text
|
| 25 |
-
*.safetensors filter=lfs diff=lfs merge=lfs -text
|
| 26 |
-
saved_model/**/* filter=lfs diff=lfs merge=lfs -text
|
| 27 |
-
*.tar.* filter=lfs diff=lfs merge=lfs -text
|
| 28 |
-
*.tar filter=lfs diff=lfs merge=lfs -text
|
| 29 |
-
*.tflite filter=lfs diff=lfs merge=lfs -text
|
| 30 |
-
*.tgz filter=lfs diff=lfs merge=lfs -text
|
| 31 |
-
*.wasm filter=lfs diff=lfs merge=lfs -text
|
| 32 |
-
*.xz filter=lfs diff=lfs merge=lfs -text
|
| 33 |
-
*.zip filter=lfs diff=lfs merge=lfs -text
|
| 34 |
-
*.zst filter=lfs diff=lfs merge=lfs -text
|
| 35 |
-
*tfevents* filter=lfs diff=lfs merge=lfs -text
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Arial.ttf
ADDED
|
Binary file (276 kB). View file
|
|
|
app.py
CHANGED
|
@@ -1,9 +1,233 @@
|
|
|
|
|
|
|
|
|
|
|
| 1 |
import gradio as gr
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 2 |
|
|
|
|
|
|
|
|
|
|
| 3 |
|
| 4 |
-
|
| 5 |
-
|
| 6 |
|
|
|
|
| 7 |
|
| 8 |
-
|
| 9 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import os
|
| 2 |
+
from pathlib import Path
|
| 3 |
+
import pandas as pd
|
| 4 |
import gradio as gr
|
| 5 |
+
from collections import OrderedDict
|
| 6 |
+
from PIL import Image, ImageDraw, ImageFont
|
| 7 |
+
from io import BytesIO
|
| 8 |
+
import PyPDF2
|
| 9 |
+
import pdf2image
|
| 10 |
|
| 11 |
+
MAX_PAGES = 50
|
| 12 |
+
MAX_PDF_SIZE = 100000000 # almost 100MB
|
| 13 |
+
MIN_WIDTH, MIN_HEIGHT = 150, 150
|
| 14 |
|
| 15 |
+
"""
|
| 16 |
+
Load diagnostic dataset
|
| 17 |
|
| 18 |
+
Have pointer to local PDF/grid files
|
| 19 |
|
| 20 |
+
Visualize PDF/grid files based on slider values and (randonly) sampled combination of sliders
|
| 21 |
+
|
| 22 |
+
--> truly interactive visualization of diagnostic samples and their questions
|
| 23 |
+
|
| 24 |
+
"""
|
| 25 |
+
|
| 26 |
+
PDF_PATH = Path("/home/jordy/Downloads/DUDE_train-val-test_binaries/PDF")
|
| 27 |
+
DIAGNOSTIC_PATH = "/home/jordy/code/DUchallenge/DUeval/diagnostic_test-updated.csv" # need access to local path; otherwise will not work
|
| 28 |
+
|
| 29 |
+
answer_types = {
|
| 30 |
+
"abstractive": "Abstractive",
|
| 31 |
+
"extractive": "Extractive",
|
| 32 |
+
"not-answerable": "Not Answerable",
|
| 33 |
+
"list/abstractive": "Abstractive List",
|
| 34 |
+
"list/extractive": "Extractive List",
|
| 35 |
+
}
|
| 36 |
+
|
| 37 |
+
DIAGNOSTIC_TEST = None
|
| 38 |
+
if os.path.exists(DIAGNOSTIC_PATH):
|
| 39 |
+
DIAGNOSTIC_TEST = pd.read_csv(DIAGNOSTIC_PATH)
|
| 40 |
+
|
| 41 |
+
meta_cats = OrderedDict(
|
| 42 |
+
{
|
| 43 |
+
"complexity": ["meta", "multihop", "other_hard", "simple", None],
|
| 44 |
+
"evidence": [
|
| 45 |
+
"handwriting",
|
| 46 |
+
"layout",
|
| 47 |
+
"plain",
|
| 48 |
+
"table_or_list",
|
| 49 |
+
"visual_chart",
|
| 50 |
+
"visual_checkbox",
|
| 51 |
+
"visual_color",
|
| 52 |
+
"visual_image",
|
| 53 |
+
"visual_logo",
|
| 54 |
+
"visual_map",
|
| 55 |
+
"visual_other",
|
| 56 |
+
"visual_signature",
|
| 57 |
+
"visual_stamp",
|
| 58 |
+
None,
|
| 59 |
+
],
|
| 60 |
+
"form": ["date", "numeric", "other", "proper", None],
|
| 61 |
+
"operation": ["arithmetic", "comparison", "counting", "normalization", None],
|
| 62 |
+
"type": ["abstractive", "extractive", None],
|
| 63 |
+
}
|
| 64 |
+
)
|
| 65 |
+
diagnostic_cats = [
|
| 66 |
+
"complexity_meta",
|
| 67 |
+
"complexity_multihop",
|
| 68 |
+
"complexity_other_hard",
|
| 69 |
+
"complexity_simple",
|
| 70 |
+
"evidence_handwriting",
|
| 71 |
+
"evidence_layout",
|
| 72 |
+
"evidence_plain",
|
| 73 |
+
"evidence_table_or_list",
|
| 74 |
+
"evidence_visual_chart",
|
| 75 |
+
"evidence_visual_checkbox",
|
| 76 |
+
"evidence_visual_color",
|
| 77 |
+
"evidence_visual_image",
|
| 78 |
+
"evidence_visual_logo",
|
| 79 |
+
"evidence_visual_map",
|
| 80 |
+
"evidence_visual_other",
|
| 81 |
+
"evidence_visual_signature",
|
| 82 |
+
"evidence_visual_stamp",
|
| 83 |
+
"form_date",
|
| 84 |
+
"form_numeric",
|
| 85 |
+
"form_other",
|
| 86 |
+
"form_proper",
|
| 87 |
+
"operation_arithmetic",
|
| 88 |
+
"operation_comparison",
|
| 89 |
+
"operation_counting",
|
| 90 |
+
"operation_normalization",
|
| 91 |
+
"type_abstractive",
|
| 92 |
+
"type_extractive",
|
| 93 |
+
"num_pages",
|
| 94 |
+
"num_tokens",
|
| 95 |
+
]
|
| 96 |
+
# DIAGNOSTIC_TEST = DIAGNOSTIC_TEST[interest_cols + ["row_hash"]]
|
| 97 |
+
|
| 98 |
+
sliders = [gr.Dropdown(choices=choices, value=choices[-1], label=label) for label, choices in meta_cats.items()]
|
| 99 |
+
|
| 100 |
+
slider_defaults = [None, "visual_checkbox", None, None, None] # [slider.value for slider in sliders]
|
| 101 |
+
|
| 102 |
+
|
| 103 |
+
def equal_image_grid(images):
|
| 104 |
+
def compute_grid(n, max_cols=6):
|
| 105 |
+
equalDivisor = int(n**0.5)
|
| 106 |
+
cols = min(equalDivisor, max_cols)
|
| 107 |
+
rows = equalDivisor
|
| 108 |
+
if rows * cols >= n:
|
| 109 |
+
return rows, cols
|
| 110 |
+
cols += 1
|
| 111 |
+
if rows * cols >= n:
|
| 112 |
+
return rows, cols
|
| 113 |
+
while rows * cols < n:
|
| 114 |
+
rows += 1
|
| 115 |
+
return rows, cols
|
| 116 |
+
|
| 117 |
+
# assert len(images) == rows*cols
|
| 118 |
+
rows, cols = compute_grid(len(images))
|
| 119 |
+
|
| 120 |
+
# rescaling to min width [height padding]
|
| 121 |
+
images = [im for im in images if (im.height > 0) and (im.width > 0)] # could be NA
|
| 122 |
+
|
| 123 |
+
min_width = min(im.width for im in images)
|
| 124 |
+
images = [im.resize((min_width, int(im.height * min_width / im.width)), resample=Image.BICUBIC) for im in images]
|
| 125 |
+
|
| 126 |
+
w, h = max([img.size[0] for img in images]), max([img.size[1] for img in images])
|
| 127 |
+
|
| 128 |
+
grid = Image.new("RGB", size=(cols * w, rows * h))
|
| 129 |
+
grid_w, grid_h = grid.size
|
| 130 |
+
|
| 131 |
+
for i, img in enumerate(images):
|
| 132 |
+
grid.paste(img, box=(i % cols * w, i // cols * h))
|
| 133 |
+
return grid
|
| 134 |
+
|
| 135 |
+
|
| 136 |
+
def add_pagenumbers(im_list, height_scale=40):
|
| 137 |
+
def add_pagenumber(image, i):
|
| 138 |
+
width, height = image.size
|
| 139 |
+
draw = ImageDraw.Draw(image)
|
| 140 |
+
fontsize = int((width * height) ** (0.5) / height_scale)
|
| 141 |
+
font = ImageFont.truetype("Arial.ttf", fontsize)
|
| 142 |
+
margin = int(2 * fontsize)
|
| 143 |
+
draw.text(
|
| 144 |
+
(width - margin, height - margin),
|
| 145 |
+
str(i + 1),
|
| 146 |
+
fill="#D00917",
|
| 147 |
+
font=font,
|
| 148 |
+
spacing=4,
|
| 149 |
+
align="right",
|
| 150 |
+
)
|
| 151 |
+
|
| 152 |
+
for i, image in enumerate(im_list):
|
| 153 |
+
add_pagenumber(image, i)
|
| 154 |
+
|
| 155 |
+
|
| 156 |
+
def pdf_to_grid(pdf_path):
|
| 157 |
+
|
| 158 |
+
|
| 159 |
+
reader = PyPDF2.PdfReader(pdf_path)
|
| 160 |
+
reached_page_limit = False
|
| 161 |
+
images = []
|
| 162 |
+
try:
|
| 163 |
+
for p, page in enumerate(reader.pages):
|
| 164 |
+
if reached_page_limit:
|
| 165 |
+
break
|
| 166 |
+
for image in page.images:
|
| 167 |
+
im = Image.open(BytesIO(image.data))
|
| 168 |
+
if im.width < MIN_WIDTH and im.height < MIN_HEIGHT:
|
| 169 |
+
continue
|
| 170 |
+
images.append(im)
|
| 171 |
+
except Exception as e:
|
| 172 |
+
print(f"{pdf_path} PyPDF get_images {e}")
|
| 173 |
+
images = pdf2image.convert_from_path(pdf_path)
|
| 174 |
+
|
| 175 |
+
# simpler but slower
|
| 176 |
+
# images = pdf2image.convert_from_path(pdf_path)
|
| 177 |
+
|
| 178 |
+
if len(images) == 0:
|
| 179 |
+
return None
|
| 180 |
+
add_pagenumbers(images)
|
| 181 |
+
return equal_image_grid(images)
|
| 182 |
+
|
| 183 |
+
|
| 184 |
+
def main(complexity, evidence, form, operation, type):
|
| 185 |
+
# need to write a query on diagnostic test and sample from it based on slider values
|
| 186 |
+
# then return the sample
|
| 187 |
+
query = " and ".join(
|
| 188 |
+
[
|
| 189 |
+
f"{cat}_{val} == {True}"
|
| 190 |
+
for cat, val in zip(meta_cats.keys(), [complexity, evidence, form, operation, type])
|
| 191 |
+
if val
|
| 192 |
+
]
|
| 193 |
+
)
|
| 194 |
+
results = DIAGNOSTIC_TEST.query(query)
|
| 195 |
+
if len(results) == 0:
|
| 196 |
+
return f"No results found for query {query}", "", "", ""
|
| 197 |
+
|
| 198 |
+
for i, sample in results.sample(frac=1).iterrows():
|
| 199 |
+
print("Sampled: ", sample)
|
| 200 |
+
|
| 201 |
+
# first get PDF file
|
| 202 |
+
PDF, grid = None, None
|
| 203 |
+
pdf_path = PDF_PATH / "test" / (sample["nhash"] + ".pdf")
|
| 204 |
+
if not os.path.exists(pdf_path):
|
| 205 |
+
continue
|
| 206 |
+
PDF = pdf_path
|
| 207 |
+
grid = pdf_to_grid(pdf_path)
|
| 208 |
+
if not grid:
|
| 209 |
+
continue
|
| 210 |
+
# opem and visualize as grid image
|
| 211 |
+
|
| 212 |
+
question, answer = sample["question"], sample["answer"]
|
| 213 |
+
|
| 214 |
+
# get columns where sample is True
|
| 215 |
+
diagnostics = ", ".join([cat for cat in diagnostic_cats if sample[cat]])
|
| 216 |
+
|
| 217 |
+
return question, answer, diagnostics, grid, PDF
|
| 218 |
+
|
| 219 |
+
|
| 220 |
+
# test
|
| 221 |
+
q, a, d, im, f = main(*slider_defaults)
|
| 222 |
+
|
| 223 |
+
|
| 224 |
+
outputs = [
|
| 225 |
+
gr.Textbox(label="question"),
|
| 226 |
+
gr.Textbox(label="answer"),
|
| 227 |
+
gr.Textbox(label="diagnostics"),
|
| 228 |
+
gr.Image(label="image grid of PDF"),
|
| 229 |
+
gr.File(label="PDF"),
|
| 230 |
+
]
|
| 231 |
+
|
| 232 |
+
iface = gr.Interface(fn=main, inputs=sliders, outputs=outputs, description="Visualize diagnostic samples from DUDE")
|
| 233 |
+
iface.launch(share=False)
|