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Update app.py
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app.py
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# app.py — DeepSeek-OCR + BioMedLM
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import os, tempfile, traceback, json
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import gradio as gr
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import torch
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from transformers import AutoModel, AutoTokenizer, AutoModelForCausalLM
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import spaces
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from huggingface_hub import InferenceClient
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import requests
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#
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# CONFIG (env)
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#
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BIO_REMOTE = os.getenv("BIO_REMOTE", "1") == "1" #
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BIO_MODEL_ID = os.getenv("BIO_MODEL_ID", "stanford-crfm/BioMedLM").strip()
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HF_TOKEN = os.getenv("HF_TOKEN")
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HF_PROVIDER = os.getenv("HF_PROVIDER", "hf-inference").strip()
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BIO_FALLBACK_REMOTE = os.getenv("BIO_FALLBACK_REMOTE", "1") == "1" # Si local falla => intenta remoto
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GEN_TEMPERATURE = float(os.getenv("GEN_TEMPERATURE", "0.2"))
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GEN_TOP_P = float(os.getenv("GEN_TOP_P", "0.9"))
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GEN_MAX_NEW_TOKENS = int(os.getenv("GEN_MAX_NEW_TOKENS", "512"))
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GEN_REP_PENALTY = float(os.getenv("GEN_REP_PENALTY", "1.1"))
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GEN_TIMEOUT = int(os.getenv("GEN_TIMEOUT", "60")) #
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STOP_SEQS = ["\nUser:", "### System", "### Context", "### Conversation"]
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# Caches (
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_hf_client = None
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_bio_local_cache = {"model": None, "tokenizer": None}
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#
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#
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#
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def _truncate(text, max_chars=3000):
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return (text or "")[:max_chars]
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def _system_prompt():
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return ("Eres un asistente clínico educativo. No sustituyes el juicio médico. "
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"Usa CONTEXTO_OCR si existe; si falta, pídelo. Evita diagnósticos definitivos.")
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def _ocr_context(ocr_md, ocr_txt):
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return _truncate(ocr_md) or _truncate(ocr_txt) or ""
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def build_prompt(chat_msgs, ocr_md, ocr_txt, user_msg):
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"""Prompt estilo instruct para BioMedLM (no chat nativo)."""
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sys = _system_prompt()
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ctx = _ocr_context(ocr_md, ocr_txt)
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@@ -68,89 +64,85 @@ def build_prompt(chat_msgs, ocr_md, ocr_txt, user_msg):
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prompt += f"### Conversation\n{convo}\nAssistant:"
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return prompt
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#
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#
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#
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def get_biomedlm():
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"""
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global _hf_client
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if BIO_REMOTE:
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if _hf_client is None:
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#
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_hf_client = InferenceClient(
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return ("remote", _hf_client)
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return ("local", None)
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def
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max_new_tokens: int, stop: list, timeout: int) -> str:
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"""
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Fallback directo a la API de Inference (HTTP) si falla InferenceClient.text_generation
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Maneja respuestas tanto de serverless como TGI.
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"""
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url = f"https://api-inference.huggingface.co/models/{model_id}"
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headers = {"Authorization": f"Bearer {HF_TOKEN}"} if HF_TOKEN else {}
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payload = {
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"
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"
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"stop": stop,
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"return_full_text": False
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},
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"options": {"use_cache": False, "wait_for_model": True}
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}
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def call_biomedlm_remote(prompt: str) -> (str, str):
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"""
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"""
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client = get_biomedlm()[1]
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try:
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temperature=GEN_TEMPERATURE,
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top_p=GEN_TOP_P,
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stop_sequences=STOP_SEQS,
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details=False, # mantener string plano
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stream=False,
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timeout=GEN_TIMEOUT,
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)
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answer =
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return answer, ""
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except Exception as e:
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# Fallback
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try:
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answer =
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GEN_TEMPERATURE, GEN_TOP_P, GEN_REP_PENALTY,
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GEN_MAX_NEW_TOKENS, STOP_SEQS, GEN_TIMEOUT
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).strip()
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dbg = f"[Fallback HTTP HF] {e.__class__.__name__}: {str(e) or repr(e)}"
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return answer, dbg
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except Exception as e2:
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raise RuntimeError(
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@spaces.GPU
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def biomedlm_infer_local(prompt: str,
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top_p=0.9,
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rep_penalty=1.1,
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max_new_tokens=512) -> str:
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"""Ejecución local en worker GPU;
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try:
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# Carga perezosa dentro del worker GPU
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if _bio_local_cache["model"] is None:
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tok = AutoTokenizer.from_pretrained(BIO_MODEL_ID, use_fast=True)
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if torch.cuda.is_available()
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dtype = torch.float32
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model = AutoModelForCausalLM.from_pretrained(BIO_MODEL_ID, torch_dtype=dtype)
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if torch.cuda.is_available():
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model = model.to("cuda")
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_bio_local_cache["model"] = model.eval()
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_bio_local_cache["tokenizer"] = tok
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model = _bio_local_cache["model"]
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tok = _bio_local_cache["tokenizer"]
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inputs = tok(prompt, return_tensors="pt")
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if torch.cuda.is_available():
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inputs = {k: v.to("cuda") for k, v in inputs.items()}
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)
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text = tok.decode(gen_ids[0][inputs["input_ids"].shape[1]:], skip_special_tokens=True)
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return "OK::" + text.strip()
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except Exception as e:
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return f"ERR::[{err_cls}] {str(e) or repr(e)}"
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def biomedlm_reply(user_msg, chat_msgs, ocr_md, ocr_txt):
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"""Wrapper que decide remoto/local y maneja fallback + mensajes de error explícitos."""
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try:
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if not user_msg:
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user_msg = "Analiza el CONTEXTO_OCR anterior y responde a partir de ese contenido."
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prompt = build_prompt(chat_msgs, ocr_md, ocr_txt, user_msg)
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mode,
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# Preferido: remoto (evita límites ZeroGPU y CUDA en main)
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if mode == "remote":
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answer, dbg = call_biomedlm_remote(prompt)
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updated = (chat_msgs or []) + [
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rep_penalty=GEN_REP_PENALTY,
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max_new_tokens=GEN_MAX_NEW_TOKENS
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)
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if res.startswith("OK::"):
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answer = res[4:]
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updated = (chat_msgs or []) + [
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]
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return updated, "", gr.update(value="")
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else:
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# Error local: mensaje detallado viene en res
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err_msg = res[5:] if res.startswith("ERR::") else res
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]
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return updated, "", gr.update(value=f"[Local->Remoto fallback]\n{err_msg}\n{dbg2}")
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else:
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updated = (chat_msgs or []) + [
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{"role": "user", "content": user_msg},
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{"role": "assistant", "content": "⚠️ Error LLM (local). Revisa el panel de debug."}
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]
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return updated, "", gr.update(value=err_msg)
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except Exception as e:
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err = f"{e.__class__.__name__}: {str(e) or repr(e)}"
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]
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return updated, "", gr.update(value=f"{err}\n{tb}")
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def clear_chat():
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return [], "", gr.update(value="")
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#
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# DeepSeek-OCR (
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#
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# ===============================================================
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def _load_ocr_model():
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model_name = "deepseek-ai/DeepSeek-OCR"
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ocr_tokenizer = AutoTokenizer.from_pretrained(model_name, trust_remote_code=True)
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attn_impl = os.getenv("OCR_ATTN_IMPL", "flash_attention_2")
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try:
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ocr_model = AutoModel.from_pretrained(
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model_name,
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_attn_implementation=attn_impl,
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trust_remote_code=True,
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use_safetensors=True
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).eval()
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return ocr_tokenizer, ocr_model
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except Exception as e:
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if any(k in str(e).lower() for k in ["flash_attn", "flashattention2", "flash_attention_2"]):
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ocr_model = AutoModel.from_pretrained(
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model_name,
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_attn_implementation="eager",
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trust_remote_code=True,
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use_safetensors=True
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).eval()
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return ocr_tokenizer, ocr_model
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raise
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if image is None:
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return None, "Please upload an image first.", "Please upload an image first."
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# Mover a GPU SOLO dentro del worker
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if torch.cuda.is_available():
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dtype = torch.bfloat16 if torch.cuda.is_bf16_supported() else torch.float16
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model_device = model.to(dtype).to("cuda")
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text_result = plain_text_result if plain_text_result else markdown_content
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return result_image, markdown_content, text_result
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#
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# UI (Gradio 5)
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#
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with gr.Blocks(title="DeepSeek-OCR + BioMedLM", theme=gr.themes.Soft()) as demo:
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gr.Markdown(
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"""
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with gr.Row():
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with gr.Column(scale=1):
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image_input = gr.Image(type="pil", label="Upload Image", sources=["upload", "clipboard", "webcam"])
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model_size = gr.Dropdown(
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choices=["Free OCR", "Convert to Markdown"],
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value="Convert to Markdown",
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label="Task Type"
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)
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eval_mode_checkbox = gr.Checkbox(
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value=False,
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label="Enable Evaluation Mode",
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info="Solo texto (más rápido). Desmárcalo para ver imagen anotada y markdown."
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)
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submit_btn = gr.Button("Process Image", variant="primary")
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with gr.Column(scale=2):
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with gr.Tabs():
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with gr.TabItem("Annotated Image"):
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with gr.TabItem("Markdown Preview"):
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output_markdown = gr.Markdown()
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with gr.TabItem("Markdown Source (or Eval Output)"):
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output_text = gr.Textbox(lines=18, show_copy_button=True, interactive=False)
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with gr.Row():
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outputs=[ocr_md_state, ocr_txt_state, md_preview, txt_preview],
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)
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send_btn.click(
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inputs=[user_in, chatbot, ocr_md_state, ocr_txt_state],
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outputs=[chatbot, user_in, error_box]
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)
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clear_btn.click(fn=clear_chat, outputs=[chatbot, user_in, error_box])
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if __name__ == "__main__":
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# app.py — DeepSeek-OCR + BioMedLM (HF router fix + ZeroGPU-safe) — Gradio 5
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import os, tempfile, traceback, json
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import gradio as gr
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import torch
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from transformers import AutoModel, AutoTokenizer, AutoModelForCausalLM
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import spaces
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from huggingface_hub import InferenceClient
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import requests
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# =========================
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# CONFIG (env)
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# =========================
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BIO_REMOTE = os.getenv("BIO_REMOTE", "1") == "1" # recomendado en Spaces ZeroGPU
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BIO_MODEL_ID = os.getenv("BIO_MODEL_ID", "stanford-crfm/BioMedLM").strip()
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HF_TOKEN = os.getenv("HF_TOKEN")
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HF_PROVIDER = os.getenv("HF_PROVIDER", "hf-inference").strip()
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GEN_TEMPERATURE = float(os.getenv("GEN_TEMPERATURE", "0.2"))
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GEN_TOP_P = float(os.getenv("GEN_TOP_P", "0.9"))
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GEN_MAX_NEW_TOKENS = int(os.getenv("GEN_MAX_NEW_TOKENS", "512"))
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GEN_REP_PENALTY = float(os.getenv("GEN_REP_PENALTY", "1.1"))
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GEN_TIMEOUT = int(os.getenv("GEN_TIMEOUT", "60")) # s
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STOP_SEQS = ["\nUser:", "### System", "### Context", "### Conversation"]
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# Caches (sin tocar CUDA en el proceso principal)
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_hf_client = None
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_bio_local_cache = {"model": None, "tokenizer": None}
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# =========================
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# Prompt helpers
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# =========================
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def _truncate(text, max_chars=3000): return (text or "")[:max_chars]
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def _system_prompt():
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return ("Eres un asistente clínico educativo. No sustituyes el juicio médico. "
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"Usa CONTEXTO_OCR si existe; si falta, pídelo. Evita diagnósticos definitivos.")
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def _ocr_context(ocr_md, ocr_txt): return _truncate(ocr_md) or _truncate(ocr_txt) or ""
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def build_prompt(chat_msgs, ocr_md, ocr_txt, user_msg):
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sys = _system_prompt()
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ctx = _ocr_context(ocr_md, ocr_txt)
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prompt += f"### Conversation\n{convo}\nAssistant:"
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return prompt
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# =========================
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# BioMedLM remoto/local
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# =========================
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def get_biomedlm():
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"""Decidir modo. No tocar CUDA aquí."""
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global _hf_client
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if BIO_REMOTE:
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if _hf_client is None:
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# timeout va en el constructor del cliente (no en text_generation)
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_hf_client = InferenceClient(
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model=BIO_MODEL_ID,
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provider=HF_PROVIDER,
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token=HF_TOKEN,
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timeout=GEN_TIMEOUT, # ← así es correcto
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)
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return ("remote", _hf_client)
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return ("local", None)
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def _hf_http_chat(prompt: str) -> str:
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"""Fallback HTTP al router HF (dos rutas posibles)."""
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headers = {"Authorization": f"Bearer {HF_TOKEN}"} if HF_TOKEN else {}
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payload = {
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"model": BIO_MODEL_ID,
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"messages": [{"role": "user", "content": prompt}],
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+
"max_tokens": GEN_MAX_NEW_TOKENS,
|
| 92 |
+
"temperature": GEN_TEMPERATURE,
|
| 93 |
+
"top_p": GEN_TOP_P,
|
| 94 |
+
"stop": STOP_SEQS,
|
|
|
|
|
|
|
|
|
|
|
|
|
| 95 |
}
|
| 96 |
+
|
| 97 |
+
# 1) ruta OpenAI-compat
|
| 98 |
+
urls = [
|
| 99 |
+
"https://router.huggingface.co/v1/chat/completions",
|
| 100 |
+
# 2) algunos clientes piden prefijo /hf-inference
|
| 101 |
+
"https://router.huggingface.co/hf-inference/v1/chat/completions",
|
| 102 |
+
]
|
| 103 |
+
last_exc = None
|
| 104 |
+
for url in urls:
|
| 105 |
+
try:
|
| 106 |
+
r = requests.post(url, headers=headers, json=payload, timeout=GEN_TIMEOUT)
|
| 107 |
+
if r.status_code == 200:
|
| 108 |
+
data = r.json()
|
| 109 |
+
# OpenAI-like response
|
| 110 |
+
if isinstance(data, dict) and "choices" in data and data["choices"]:
|
| 111 |
+
msg = data["choices"][0].get("message") or {}
|
| 112 |
+
return (msg.get("content") or "").strip()
|
| 113 |
+
return json.dumps(data)[:4000]
|
| 114 |
+
# si 410 en api vieja, seguir intentando
|
| 115 |
+
last_exc = RuntimeError(f"HTTP {r.status_code}: {r.text[:800]}")
|
| 116 |
+
except Exception as e:
|
| 117 |
+
last_exc = e
|
| 118 |
+
raise last_exc or RuntimeError("HF router error")
|
| 119 |
|
| 120 |
def call_biomedlm_remote(prompt: str) -> (str, str):
|
| 121 |
"""
|
| 122 |
+
Usa chat.completions.create (OpenAI-like). Si falla, cae a HTTP router.
|
| 123 |
+
Retorna (respuesta, debug_msg)
|
| 124 |
"""
|
| 125 |
client = get_biomedlm()[1]
|
| 126 |
try:
|
| 127 |
+
resp = client.chat.completions.create(
|
| 128 |
+
model=BIO_MODEL_ID,
|
| 129 |
+
messages=[{"role": "user", "content": prompt}],
|
| 130 |
+
max_tokens=GEN_MAX_NEW_TOKENS,
|
| 131 |
temperature=GEN_TEMPERATURE,
|
| 132 |
top_p=GEN_TOP_P,
|
| 133 |
+
stop=STOP_SEQS,
|
|
|
|
|
|
|
|
|
|
|
|
|
| 134 |
)
|
| 135 |
+
answer = (resp.choices[0].message.content or "").strip()
|
| 136 |
return answer, ""
|
| 137 |
except Exception as e:
|
| 138 |
+
# Fallback HTTP al router nuevo
|
| 139 |
try:
|
| 140 |
+
answer = _hf_http_chat(prompt)
|
| 141 |
+
return answer, f"[Fallback HTTP router] {e.__class__.__name__}: {e}"
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 142 |
except Exception as e2:
|
| 143 |
+
raise RuntimeError(
|
| 144 |
+
f"Remote generation failed: {e.__class__.__name__}: {e} | HTTP fallback: {e2.__class__.__name__}: {e2}"
|
| 145 |
+
)
|
| 146 |
|
| 147 |
@spaces.GPU
|
| 148 |
def biomedlm_infer_local(prompt: str,
|
|
|
|
| 150 |
top_p=0.9,
|
| 151 |
rep_penalty=1.1,
|
| 152 |
max_new_tokens=512) -> str:
|
| 153 |
+
"""Ejecución local en worker GPU; devuelve OK:: o ERR::..."""
|
| 154 |
try:
|
|
|
|
| 155 |
if _bio_local_cache["model"] is None:
|
| 156 |
tok = AutoTokenizer.from_pretrained(BIO_MODEL_ID, use_fast=True)
|
| 157 |
+
dtype = torch.bfloat16 if (torch.cuda.is_available() and torch.cuda.is_bf16_supported()) else (
|
| 158 |
+
torch.float16 if torch.cuda.is_available() else torch.float32
|
| 159 |
+
)
|
|
|
|
|
|
|
| 160 |
model = AutoModelForCausalLM.from_pretrained(BIO_MODEL_ID, torch_dtype=dtype)
|
| 161 |
if torch.cuda.is_available():
|
| 162 |
model = model.to("cuda")
|
|
|
|
| 163 |
_bio_local_cache["model"] = model.eval()
|
| 164 |
_bio_local_cache["tokenizer"] = tok
|
| 165 |
|
| 166 |
model = _bio_local_cache["model"]
|
| 167 |
tok = _bio_local_cache["tokenizer"]
|
|
|
|
| 168 |
inputs = tok(prompt, return_tensors="pt")
|
| 169 |
if torch.cuda.is_available():
|
| 170 |
inputs = {k: v.to("cuda") for k, v in inputs.items()}
|
|
|
|
| 180 |
)
|
| 181 |
text = tok.decode(gen_ids[0][inputs["input_ids"].shape[1]:], skip_special_tokens=True)
|
| 182 |
return "OK::" + text.strip()
|
|
|
|
| 183 |
except Exception as e:
|
| 184 |
+
return f"ERR::[{e.__class__.__name__}] {str(e) or repr(e)}"
|
|
|
|
| 185 |
|
| 186 |
def biomedlm_reply(user_msg, chat_msgs, ocr_md, ocr_txt):
|
|
|
|
| 187 |
try:
|
| 188 |
if not user_msg:
|
| 189 |
user_msg = "Analiza el CONTEXTO_OCR anterior y responde a partir de ese contenido."
|
| 190 |
prompt = build_prompt(chat_msgs, ocr_md, ocr_txt, user_msg)
|
| 191 |
|
| 192 |
+
mode, _ = get_biomedlm()
|
|
|
|
|
|
|
| 193 |
if mode == "remote":
|
| 194 |
answer, dbg = call_biomedlm_remote(prompt)
|
| 195 |
updated = (chat_msgs or []) + [
|
|
|
|
| 206 |
rep_penalty=GEN_REP_PENALTY,
|
| 207 |
max_new_tokens=GEN_MAX_NEW_TOKENS
|
| 208 |
)
|
|
|
|
| 209 |
if res.startswith("OK::"):
|
| 210 |
answer = res[4:]
|
| 211 |
updated = (chat_msgs or []) + [
|
|
|
|
| 214 |
]
|
| 215 |
return updated, "", gr.update(value="")
|
| 216 |
else:
|
|
|
|
| 217 |
err_msg = res[5:] if res.startswith("ERR::") else res
|
| 218 |
+
# fallback a remoto si se permite
|
| 219 |
+
answer2, dbg2 = call_biomedlm_remote(prompt)
|
| 220 |
+
updated = (chat_msgs or []) + [
|
| 221 |
+
{"role": "user", "content": user_msg},
|
| 222 |
+
{"role": "assistant", "content": answer2}
|
| 223 |
+
]
|
| 224 |
+
return updated, "", gr.update(value=f"[Local->Remoto fallback]\n{err_msg}\n{dbg2}")
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 225 |
|
| 226 |
except Exception as e:
|
| 227 |
err = f"{e.__class__.__name__}: {str(e) or repr(e)}"
|
|
|
|
| 232 |
]
|
| 233 |
return updated, "", gr.update(value=f"{err}\n{tb}")
|
| 234 |
|
| 235 |
+
def clear_chat(): return [], "", gr.update(value="")
|
|
|
|
| 236 |
|
| 237 |
+
# =========================
|
| 238 |
+
# DeepSeek-OCR (sin CUDA en main)
|
| 239 |
+
# =========================
|
|
|
|
| 240 |
def _load_ocr_model():
|
| 241 |
model_name = "deepseek-ai/DeepSeek-OCR"
|
| 242 |
ocr_tokenizer = AutoTokenizer.from_pretrained(model_name, trust_remote_code=True)
|
| 243 |
attn_impl = os.getenv("OCR_ATTN_IMPL", "flash_attention_2")
|
| 244 |
try:
|
| 245 |
ocr_model = AutoModel.from_pretrained(
|
| 246 |
+
model_name, _attn_implementation=attn_impl, trust_remote_code=True, use_safetensors=True
|
|
|
|
|
|
|
|
|
|
| 247 |
).eval()
|
| 248 |
return ocr_tokenizer, ocr_model
|
| 249 |
except Exception as e:
|
| 250 |
if any(k in str(e).lower() for k in ["flash_attn", "flashattention2", "flash_attention_2"]):
|
| 251 |
ocr_model = AutoModel.from_pretrained(
|
| 252 |
+
model_name, _attn_implementation="eager", trust_remote_code=True, use_safetensors=True
|
|
|
|
|
|
|
|
|
|
| 253 |
).eval()
|
| 254 |
return ocr_tokenizer, ocr_model
|
| 255 |
raise
|
|
|
|
| 261 |
if image is None:
|
| 262 |
return None, "Please upload an image first.", "Please upload an image first."
|
| 263 |
|
|
|
|
| 264 |
if torch.cuda.is_available():
|
| 265 |
dtype = torch.bfloat16 if torch.cuda.is_bf16_supported() else torch.float16
|
| 266 |
model_device = model.to(dtype).to("cuda")
|
|
|
|
| 310 |
text_result = plain_text_result if plain_text_result else markdown_content
|
| 311 |
return result_image, markdown_content, text_result
|
| 312 |
|
| 313 |
+
# =========================
|
| 314 |
# UI (Gradio 5)
|
| 315 |
+
# =========================
|
| 316 |
with gr.Blocks(title="DeepSeek-OCR + BioMedLM", theme=gr.themes.Soft()) as demo:
|
| 317 |
gr.Markdown(
|
| 318 |
"""
|
|
|
|
| 329 |
with gr.Row():
|
| 330 |
with gr.Column(scale=1):
|
| 331 |
image_input = gr.Image(type="pil", label="Upload Image", sources=["upload", "clipboard", "webcam"])
|
| 332 |
+
model_size = gr.Dropdown(choices=["Tiny", "Small", "Base", "Large", "Gundam (Recommended)"],
|
| 333 |
+
value="Gundam (Recommended)", label="Model Size")
|
| 334 |
+
task_type = gr.Dropdown(choices=["Free OCR", "Convert to Markdown"],
|
| 335 |
+
value="Convert to Markdown", label="Task Type")
|
| 336 |
+
eval_mode_checkbox = gr.Checkbox(value=False, label="Enable Evaluation Mode",
|
| 337 |
+
info="Solo texto (más rápido). Desmárcalo para ver imagen anotada y markdown.")
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 338 |
submit_btn = gr.Button("Process Image", variant="primary")
|
| 339 |
|
| 340 |
with gr.Column(scale=2):
|
| 341 |
with gr.Tabs():
|
| 342 |
+
with gr.TabItem("Annotated Image"): output_image = gr.Image(interactive=False)
|
| 343 |
+
with gr.TabItem("Markdown Preview"): output_markdown = gr.Markdown()
|
|
|
|
|
|
|
| 344 |
with gr.TabItem("Markdown Source (or Eval Output)"):
|
| 345 |
output_text = gr.Textbox(lines=18, show_copy_button=True, interactive=False)
|
| 346 |
with gr.Row():
|
|
|
|
| 368 |
outputs=[ocr_md_state, ocr_txt_state, md_preview, txt_preview],
|
| 369 |
)
|
| 370 |
|
| 371 |
+
send_btn.click(fn=biomedlm_reply, inputs=[user_in, chatbot, ocr_md_state, ocr_txt_state],
|
| 372 |
+
outputs=[chatbot, user_in, error_box])
|
|
|
|
|
|
|
|
|
|
| 373 |
clear_btn.click(fn=clear_chat, outputs=[chatbot, user_in, error_box])
|
| 374 |
|
| 375 |
if __name__ == "__main__":
|