fix

app.py

@@ -1,24 +1,14 @@
+
 import os
 import gradio as gr
-import pandas as pd
-import numpy as np
 
 
 from langchain_community.utilities import SQLDatabase
 from langchain_anthropic import ChatAnthropic
 
-from typing import Any
 
-from langchain_core.messages import ToolMessage
-from langchain_core.runnables import RunnableLambda, RunnableWithFallbacks
-from langgraph.prebuilt import ToolNode
-import pandas as pd
-import numpy as np
-from sqlalchemy import create_engine
+
 from langgraph.checkpoint.memory import InMemorySaver
-from langchain_core.runnables.history import RunnableWithMessageHistory
-from langchain_core.chat_history import InMemoryChatMessageHistory
-import json
 from langchain_community.agent_toolkits import SQLDatabaseToolkit
 from langchain.agents import create_agent
 
@@ -29,11 +19,8 @@ from scripts.uniprot import get_protein_location
 from scripts.db import create_database
 from scripts.utils import *
 
-import threading
-import time
-import random
-import subprocess
 
+#os.environ["OMP_NUM_THREADS"] = "1"
 
 DB_URI = "sqlite:///proteomics.db"
 

requirements.txt

@@ -1,14 +1,10 @@
-unstructured
-bitsandbytes 
-trl==0.4.7
-langchain==0.3.15
-langchain-community==0.3.15
+langchain
+langchain-community
 gradio
 nltk==3.9.1
-rank-bm25==0.2.2
 metapub
 langchain-experimental
-langgraph==0.4.0
+langgraph
 langchain-anthropic 
 langgraph-checkpoint-sqlite