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maotao_file/codon_table/codon_usage_Ec.csv

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+triplet,amino_acid,fraction,frequency,number
+UUU,F,0.57,22.2,30462
+UCU,S,0.15,8.4,11512
+UAU,Y,0.57,16.1,22037
+UGU,C,0.44,5.1,7016
+UUC,F,0.43,16.5,22705
+UCC,S,0.15,8.6,11802
+UAC,Y,0.43,12.2,16795
+UGC,C,0.56,6.4,8797
+UUA,L,0.13,13.8,18894
+UCA,S,0.12,7.0,9620
+UAA,*,0.64,2.0,2765
+UGA,*,0.29,0.9,1249
+UUG,L,0.13,13.6,18664
+UCG,S,0.15,8.9,12210
+UAG,*,0.07,0.2,321
+UGG,W,1.00,15.2,20889
+CUU,L,0.10,11.0,15082
+CCU,P,0.16,7.0,9540
+CAU,H,0.57,13.0,17791
+CGU,R,0.38,21.0,28866
+CUC,L,0.10,11.1,15272
+CCC,P,0.12,5.5,7490
+CAC,H,0.43,9.8,13399
+CGC,R,0.40,22.3,30530
+CUA,L,0.04,3.8,5266
+CCA,P,0.19,8.4,11569
+CAA,Q,0.35,15.4,21121
+CGA,R,0.06,3.5,4810
+CUG,L,0.50,53.1,72898
+CCG,P,0.53,23.4,32080
+CAG,Q,0.65,29.0,39835
+CGG,R,0.10,5.4,7401
+AUU,I,0.51,30.4,41644
+ACU,T,0.16,8.8,12119
+AAU,N,0.45,17.6,24106
+AGU,S,0.15,8.7,11924
+AUC,I,0.42,25.2,34568
+ACC,T,0.44,23.5,32265
+AAC,N,0.55,21.6,29581
+AGC,S,0.28,16.1,22067
+AUA,I,0.07,4.2,5733
+ACA,T,0.13,6.9,9452
+AAA,K,0.76,33.6,46116
+AGA,R,0.04,2.0,2771
+AUG,M,1.00,27.8,38167
+ACG,T,0.27,14.4,19820
+AAG,K,0.24,10.3,14174
+AGG,R,0.02,1.1,1496
+GUU,V,0.26,18.2,24991
+GCU,A,0.16,15.2,20813
+GAU,D,0.63,32.2,44217
+GGU,G,0.34,24.7,33875
+GUC,V,0.22,15.3,21050
+GCC,A,0.27,25.7,35252
+GAC,D,0.37,19.1,26270
+GGC,G,0.41,29.8,40849
+GUA,V,0.15,10.9,14901
+GCA,A,0.21,20.1,27567
+GAA,E,0.69,39.7,54431
+GGA,G,0.11,7.9,10774
+GUG,V,0.37,26.3,36108
+GCG,A,0.36,33.9,46524
+GAG,E,0.31,18.0,24629
+GGG,G,0.15,11.0,15115

maotao_file/codon_table/codon_usage_Human.csv

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+triplet,amino_acid,fraction,frequency,number
+UUU,F,0.46,17.6,714298
+UCU,S,0.19,15.2,618711
+UAU,Y,0.44,12.2,495699
+UGU,C,0.46,10.6,430311
+UUC,F,0.54,20.3,824692
+UCC,S,0.22,17.7,718892
+UAC,Y,0.56,15.3,622407
+UGC,C,0.54,12.6,513028
+UUA,L,0.08,7.7,311881
+UCA,S,0.15,12.2,496448
+UAA,*,0.30,1.0,40285
+UGA,*,0.47,1.6,63237
+UUG,L,0.13,12.9,525688
+UCG,S,0.05,4.4,179419
+UAG,*,0.24,0.8,32109
+UGG,W,1.00,13.2,535595
+CUU,L,0.13,13.2,536515
+CCU,P,0.29,17.5,713233
+CAU,H,0.42,10.9,441711
+CGU,R,0.08,4.5,184609
+CUC,L,0.20,19.6,796638
+CCC,P,0.32,19.8,804620
+CAC,H,0.58,15.1,613713
+CGC,R,0.18,10.4,423516
+CUA,L,0.07,7.2,290751
+CCA,P,0.28,16.9,688038
+CAA,Q,0.27,12.3,501911
+CGA,R,0.11,6.2,250760
+CUG,L,0.40,39.6,1611801
+CCG,P,0.11,6.9,281570
+CAG,Q,0.73,34.2,1391973
+CGG,R,0.20,11.4,464485
+AUU,I,0.36,16.0,650473
+ACU,T,0.25,13.1,533609
+AAU,N,0.47,17.0,689701
+AGU,S,0.15,12.1,493429
+AUC,I,0.47,20.8,846466
+ACC,T,0.36,18.9,768147
+AAC,N,0.53,19.1,776603
+AGC,S,0.24,19.5,791383
+AUA,I,0.17,7.5,304565
+ACA,T,0.28,15.1,614523
+AAA,K,0.43,24.4,993621
+AGA,R,0.21,12.2,494682
+AUG,M,1.00,22.0,896005
+ACG,T,0.11,6.1,246105
+AAG,K,0.57,31.9,1295568
+AGG,R,0.21,12.0,486463
+GUU,V,0.18,11.0,448607
+GCU,A,0.27,18.4,750096
+GAU,D,0.46,21.8,885429
+GGU,G,0.16,10.8,437126
+GUC,V,0.24,14.5,588138
+GCC,A,0.40,27.7,1127679
+GAC,D,0.54,25.1,1020595
+GGC,G,0.34,22.2,903565
+GUA,V,0.12,7.1,287712
+GCA,A,0.23,15.8,643471
+GAA,E,0.42,29.0,1177632
+GGA,G,0.25,16.5,669873
+GUG,V,0.46,28.1,1143534
+GCG,A,0.11,7.4,299495
+GAG,E,0.58,39.6,1609975
+GGG,G,0.25,16.5,669768

maotao_file/codon_table/codon_usage_Pic.csv

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+triplet,amino_acid,fraction,frequency,number
+UUU,F,0.54,24.1,1963
+UCU,S,0.29,24.4,1983
+UAU,Y,0.47,16.0,1300
+UGU,C,0.64,7.7,626
+UUC,F,0.46,20.6,1675
+UCC,S,0.20,16.5,1344
+UAC,Y,0.53,18.1,1473
+UGC,C,0.36,4.4,356
+UUA,L,0.16,15.6,1265
+UCA,S,0.18,15.2,1234
+UAA,*,0.51,0.8,69
+UGA,*,0.20,0.3,27
+UUG,L,0.33,31.5,2562
+UCG,S,0.09,7.4,598
+UAG,*,0.29,0.5,40
+UGG,W,1.00,10.3,834
+CUU,L,0.16,15.9,1289
+CCU,P,0.35,15.8,1282
+CAU,H,0.57,11.8,960
+CGU,R,0.17,6.9,564
+CUC,L,0.08,7.6,620
+CCC,P,0.15,6.8,553
+CAC,H,0.43,9.1,737
+CGC,R,0.05,2.2,175
+CUA,L,0.11,10.7,873
+CCA,P,0.42,18.9,1540
+CAA,Q,0.61,25.4,2069
+CGA,R,0.10,4.2,340
+CUG,L,0.16,14.9,1215
+CCG,P,0.09,3.9,320
+CAG,Q,0.39,16.3,1323
+CGG,R,0.05,1.9,158
+AUU,I,0.50,31.1,2532
+ACU,T,0.40,22.4,1820
+AAU,N,0.48,25.1,2038
+AGU,S,0.15,12.5,1020
+AUC,I,0.31,19.4,1580
+ACC,T,0.26,14.5,1175
+AAC,N,0.52,26.7,2168
+AGC,S,0.09,7.6,621
+AUA,I,0.18,11.1,906
+ACA,T,0.24,13.8,1118
+AAA,K,0.47,29.9,2433
+AGA,R,0.48,20.1,1634
+AUG,M,1.00,18.7,1517
+ACG,T,0.11,6.0,491
+AAG,K,0.53,33.8,2748
+AGG,R,0.16,6.6,539
+GUU,V,0.42,26.9,2188
+GCU,A,0.45,28.9,2351
+GAU,D,0.58,35.7,2899
+GGU,G,0.44,25.5,2075
+GUC,V,0.23,14.9,1210
+GCC,A,0.26,16.6,1348
+GAC,D,0.42,25.9,2103
+GGC,G,0.14,8.1,655
+GUA,V,0.15,9.9,804
+GCA,A,0.23,15.1,1228
+GAA,E,0.56,37.4,3043
+GGA,G,0.33,19.1,1550
+GUG,V,0.19,12.3,998
+GCG,A,0.06,3.9,314
+GAG,E,0.44,29.0,2360
+GGG,G,0.10,5.8,468

maotao_file/codon_table/codon_usage_Sac.csv

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+triplet,amino_acid,fraction,frequency,number
+UUU,F,0.59,26.1,170666
+UCU,S,0.26,23.5,153557
+UAU,Y,0.56,18.8,122728
+UGU,C,0.63,8.1,52903
+UUC,F,0.41,18.4,120510
+UCC,S,0.16,14.2,92923
+UAC,Y,0.44,14.8,96596
+UGC,C,0.37,4.8,31095
+UUA,L,0.28,26.2,170884
+UCA,S,0.21,18.7,122028
+UAA,*,0.47,1.1,6913
+UGA,*,0.30,0.7,4447
+UUG,L,0.29,27.2,177573
+UCG,S,0.10,8.6,55951
+UAG,*,0.23,0.5,3312
+UGG,W,1.00,10.4,67789
+CUU,L,0.13,12.3,80076
+CCU,P,0.31,13.5,88263
+CAU,H,0.64,13.6,89007
+CGU,R,0.14,6.4,41791
+CUC,L,0.06,5.4,35545
+CCC,P,0.15,6.8,44309
+CAC,H,0.36,7.8,50785
+CGC,R,0.06,2.6,16993
+CUA,L,0.14,13.4,87619
+CCA,P,0.42,18.3,119641
+CAA,Q,0.69,27.3,178251
+CGA,R,0.07,3.0,19562
+CUG,L,0.11,10.5,68494
+CCG,P,0.12,5.3,34597
+CAG,Q,0.31,12.1,79121
+CGG,R,0.04,1.7,11351
+AUU,I,0.46,30.1,196893
+ACU,T,0.35,20.3,132522
+AAU,N,0.59,35.7,233124
+AGU,S,0.16,14.2,92466
+AUC,I,0.26,17.2,112176
+ACC,T,0.22,12.7,83207
+AAC,N,0.41,24.8,162199
+AGC,S,0.11,9.8,63726
+AUA,I,0.27,17.8,116254
+ACA,T,0.30,17.8,116084
+AAA,K,0.58,41.9,273618
+AGA,R,0.48,21.3,139081
+AUG,M,1.00,20.9,136805
+ACG,T,0.14,8.0,52045
+AAG,K,0.42,30.8,201361
+AGG,R,0.21,9.2,60289
+GUU,V,0.39,22.1,144243
+GCU,A,0.38,21.2,138358
+GAU,D,0.65,37.6,245641
+GGU,G,0.47,23.9,156109
+GUC,V,0.21,11.8,76947
+GCC,A,0.22,12.6,82357
+GAC,D,0.35,20.2,132048
+GGC,G,0.19,9.8,63903
+GUA,V,0.21,11.8,76927
+GCA,A,0.29,16.2,105910
+GAA,E,0.70,45.6,297944
+GGA,G,0.22,10.9,71216
+GUG,V,0.19,10.8,70337
+GCG,A,0.11,6.2,40358
+GAG,E,0.30,19.2,125717
+GGG,G,0.12,6.0,39359

maotao_file/codon_table/codon_usage_mouse.csv

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+triplet,amino_acid,fraction,frequency,number
+UUU,F,0.44,17.2,422153
+UCU,S,0.20,16.2,398250
+UAU,Y,0.43,12.2,298518
+UGU,C,0.48,11.4,279729
+UUC,F,0.56,21.8,535439
+UCC,S,0.22,18.1,444041
+UAC,Y,0.57,16.1,394074
+UGC,C,0.52,12.3,301384
+UUA,L,0.07,6.7,165150
+UCA,S,0.14,11.8,289799
+UAA,*,0.28,1.0,23403
+UGA,*,0.49,1.6,40148
+UUG,L,0.13,13.4,329668
+UCG,S,0.05,4.2,103815
+UAG,*,0.23,0.8,19126
+UGG,W,1.00,12.5,306619
+CUU,L,0.13,13.4,329757
+CCU,P,0.31,18.4,450637
+CAU,H,0.41,10.6,260637
+CGU,R,0.08,4.7,114854
+CUC,L,0.20,20.2,495018
+CCC,P,0.30,18.2,446868
+CAC,H,0.59,15.3,375626
+CGC,R,0.17,9.4,229758
+CUA,L,0.08,8.1,198032
+CCA,P,0.29,17.3,423707
+CAA,Q,0.26,12.0,293318
+CGA,R,0.12,6.6,161412
+CUG,L,0.39,39.5,969515
+CCG,P,0.10,6.2,151521
+CAG,Q,0.74,34.1,836320
+CGG,R,0.19,10.2,250836
+AUU,I,0.34,15.4,377698
+ACU,T,0.25,13.7,335039
+AAU,N,0.43,15.6,382284
+AGU,S,0.15,12.7,311331
+AUC,I,0.50,22.5,552184
+ACC,T,0.35,19.0,465115
+AAC,N,0.57,20.3,499149
+AGC,S,0.24,19.7,483013
+AUA,I,0.16,7.4,180467
+ACA,T,0.29,16.0,391437
+AAA,K,0.39,21.9,537723
+AGA,R,0.22,12.1,297135
+AUG,M,1.00,22.8,559953
+ACG,T,0.10,5.6,138180
+AAG,K,0.61,33.6,825270
+AGG,R,0.22,12.2,299472
+GUU,V,0.17,10.7,262535
+GCU,A,0.29,20.0,491093
+GAU,D,0.45,21.0,515049
+GGU,G,0.18,11.4,280522
+GUC,V,0.25,15.4,377902
+GCC,A,0.38,26.0,637878
+GAC,D,0.55,26.0,638504
+GGC,G,0.33,21.2,520069
+GUA,V,0.12,7.4,182733
+GCA,A,0.23,15.8,388723
+GAA,E,0.41,27.0,661498
+GGA,G,0.26,16.8,411344
+GUG,V,0.46,28.4,696158
+GCG,A,0.09,6.4,157124
+GAG,E,0.59,39.4,965963
+GGG,G,0.23,15.2,372099