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@@ -40,3 +40,5 @@ fairseq/data/data_utils_fast.cpython-38-darwin.so filter=lfs diff=lfs merge=lfs
 fairseq/data/token_block_utils_fast.cpython-310-darwin.so filter=lfs diff=lfs merge=lfs -text
 fairseq/data/token_block_utils_fast.cpython-36m-darwin.so filter=lfs diff=lfs merge=lfs -text
 fairseq/data/token_block_utils_fast.cpython-38-darwin.so filter=lfs diff=lfs merge=lfs -text
+fairseq/data/data_utils_fast.cpython-310-x86_64-linux-gnu.so filter=lfs diff=lfs merge=lfs -text
+fairseq/data/token_block_utils_fast.cpython-310-x86_64-linux-gnu.so filter=lfs diff=lfs merge=lfs -text

fairseq/__init__.py

@@ -0,0 +1,26 @@
+# Copyright (c) Facebook, Inc. and its affiliates.
+#
+# This source code is licensed under the MIT license found in the
+# LICENSE file in the root directory of this source tree.
+
+__all__ = ['pdb']
+__version__ = '0.9.0'
+
+import sys
+
+# backwards compatibility to support `from fairseq.meters import AverageMeter`
+from fairseq.logging import meters, metrics, progress_bar  # noqa
+sys.modules['fairseq.meters'] = meters
+sys.modules['fairseq.metrics'] = metrics
+sys.modules['fairseq.progress_bar'] = progress_bar
+
+import fairseq.criterions  # noqa
+import fairseq.models  # noqa
+import fairseq.modules  # noqa
+import fairseq.optim  # noqa
+import fairseq.optim.lr_scheduler  # noqa
+import fairseq.pdb  # noqa
+import fairseq.tasks  # noqa
+
+import fairseq.benchmark  # noqa
+import fairseq.model_parallel  # noqa

fairseq/benchmark/__init__.py

@@ -0,0 +1,12 @@
+# Copyright (c) Facebook, Inc. and its affiliates.
+#
+# This source code is licensed under the MIT license found in the
+# LICENSE file in the root directory of this source tree.
+
+# import models/tasks to register them
+from . import (  # noqa
+    dummy_lm,
+    dummy_masked_lm,
+    dummy_model,
+    dummy_mt,
+)

fairseq/benchmark/dummy_lm.py

@@ -0,0 +1,118 @@
+# Copyright (c) Facebook, Inc. and its affiliates.
+#
+# This source code is licensed under the MIT license found in the
+# LICENSE file in the root directory of this source tree.
+
+import logging
+
+import numpy as np
+import torch
+
+from fairseq.data import Dictionary, FairseqDataset
+from fairseq.tasks import FairseqTask, register_task
+
+
+logger = logging.getLogger(__name__)
+
+
+@register_task('dummy_lm')
+class DummyLMTask(FairseqTask):
+
+    @staticmethod
+    def add_args(parser):
+        """Add task-specific arguments to the parser."""
+        parser.add_argument('--dict-size', default=49996, type=int)
+        parser.add_argument('--dataset-size', default=100000, type=int)
+        parser.add_argument('--tokens-per-sample', default=512, type=int,
+                            help='max number of total tokens over all segments '
+                                 'per sample for BERT dataset')
+
+    def __init__(self, args, dictionary):
+        super().__init__(args)
+        self.dictionary = dictionary
+        self.seed = args.seed
+
+        dictionary.pad_to_multiple_(8)  # often faster if divisible by 8
+
+        seq = torch.arange(args.tokens_per_sample + 1) + dictionary.pad() + 1
+
+        self.dummy_src = seq[:-1]
+        self.dummy_tgt = seq[1:]
+
+    @classmethod
+    def setup_task(cls, args, **kwargs):
+        """Setup the task. """
+        dictionary = Dictionary()
+        for i in range(args.dict_size):
+            dictionary.add_symbol('word{}'.format(i))
+        logger.info('dictionary: {} types'.format(len(dictionary)))
+        return cls(args, dictionary)
+
+    def load_dataset(self, split, epoch=1, combine=False, **kwargs):
+        """Load a given dataset split.
+        Args:
+            split (str): name of the split (e.g., train, valid, test)
+        """
+        if self.args.max_sentences is not None:
+            bsz = self.args.max_sentences
+        else:
+            bsz = max(1, self.args.max_tokens // self.args.tokens_per_sample)
+        self.datasets[split] = DummyDataset(
+            {
+                'id': 1,
+                'net_input': {
+                    'src_tokens': torch.stack([self.dummy_src for _ in range(bsz)]),
+                    'src_lengths': torch.full(
+                        (bsz, ), self.args.tokens_per_sample, dtype=torch.long
+                    ),
+                },
+                'target': torch.stack([self.dummy_tgt for _ in range(bsz)]),
+                'nsentences': bsz,
+                'ntokens': bsz * self.args.tokens_per_sample,
+            },
+            num_items=self.args.dataset_size,
+            item_size=self.args.tokens_per_sample,
+        )
+
+    @property
+    def source_dictionary(self):
+        return self.dictionary
+
+    @property
+    def target_dictionary(self):
+        return self.dictionary
+
+
+class DummyDataset(FairseqDataset):
+
+    def __init__(self, batch, num_items, item_size):
+        super().__init__()
+        self.batch = batch
+        self.num_items = num_items
+        self.item_size = item_size
+
+    def __getitem__(self, index):
+        return index
+
+    def __len__(self):
+        return self.num_items
+
+    def collater(self, samples):
+        return self.batch
+
+    @property
+    def sizes(self):
+        return np.array([self.item_size] * self.num_items)
+
+    def num_tokens(self, index):
+        return self.item_size
+
+    def size(self, index):
+        return self.item_size
+
+    def ordered_indices(self):
+        return np.arange(self.num_items)
+
+    @property
+    def supports_prefetch(self):
+        return False

fairseq/benchmark/dummy_masked_lm.py

@@ -0,0 +1,127 @@
+# Copyright (c) Facebook, Inc. and its affiliates.
+#
+# This source code is licensed under the MIT license found in the
+# LICENSE file in the root directory of this source tree.
+
+import logging
+
+import numpy as np
+import torch
+
+from fairseq.data import Dictionary, FairseqDataset
+from fairseq.tasks import FairseqTask, register_task
+
+
+logger = logging.getLogger(__name__)
+
+
+@register_task('dummy_masked_lm')
+class DummyMaskedLMTask(FairseqTask):
+
+    @staticmethod
+    def add_args(parser):
+        """Add task-specific arguments to the parser."""
+        parser.add_argument('--dict-size', default=49995, type=int)
+        parser.add_argument('--dataset-size', default=100000, type=int)
+        parser.add_argument('--tokens-per-sample', default=512, type=int,
+                            help='max number of total tokens over all segments '
+                                 'per sample for BERT dataset')
+
+    def __init__(self, args, dictionary):
+        super().__init__(args)
+        self.dictionary = dictionary
+        self.seed = args.seed
+
+        # add mask token
+        self.mask_idx = dictionary.add_symbol('<mask>')
+        dictionary.pad_to_multiple_(8)  # often faster if divisible by 8
+
+        mask_idx = 0
+        pad_idx = 1
+        seq = torch.arange(args.tokens_per_sample) + pad_idx + 1
+        mask = torch.arange(2, args.tokens_per_sample, 7)  # ~15%
+        src = seq.clone()
+        src[mask] = mask_idx
+        tgt = torch.full_like(seq, pad_idx)
+        tgt[mask] = seq[mask]
+
+        self.dummy_src = src
+        self.dummy_tgt = tgt
+
+    @classmethod
+    def setup_task(cls, args, **kwargs):
+        """Setup the task. """
+        dictionary = Dictionary()
+        for i in range(args.dict_size):
+            dictionary.add_symbol('word{}'.format(i))
+        logger.info('dictionary: {} types'.format(len(dictionary)))
+        return cls(args, dictionary)
+
+    def load_dataset(self, split, epoch=1, combine=False, **kwargs):
+        """Load a given dataset split.
+        Args:
+            split (str): name of the split (e.g., train, valid, test)
+        """
+        if self.args.max_sentences is not None:
+            bsz = self.args.max_sentences
+        else:
+            bsz = max(1, self.args.max_tokens // self.args.tokens_per_sample)
+        self.datasets[split] = DummyDataset(
+            {
+                'id': 1,
+                'net_input': {
+                    'src_tokens': torch.stack([self.dummy_src for _ in range(bsz)]),
+                    'src_lengths': torch.full(
+                        (bsz, ), self.args.tokens_per_sample, dtype=torch.long
+                    ),
+                },
+                'target': torch.stack([self.dummy_tgt for _ in range(bsz)]),
+                'nsentences': bsz,
+                'ntokens': bsz * self.args.tokens_per_sample,
+            },
+            num_items=self.args.dataset_size,
+            item_size=self.args.tokens_per_sample,
+        )
+
+    @property
+    def source_dictionary(self):
+        return self.dictionary
+
+    @property
+    def target_dictionary(self):
+        return self.dictionary
+
+
+class DummyDataset(FairseqDataset):
+
+    def __init__(self, batch, num_items, item_size):
+        super().__init__()
+        self.batch = batch
+        self.num_items = num_items
+        self.item_size = item_size
+
+    def __getitem__(self, index):
+        return index
+
+    def __len__(self):
+        return self.num_items
+
+    def collater(self, samples):
+        return self.batch
+
+    @property
+    def sizes(self):
+        return np.array([self.item_size] * self.num_items)
+
+    def num_tokens(self, index):
+        return self.item_size
+
+    def size(self, index):
+        return self.item_size
+
+    def ordered_indices(self):
+        return np.arange(self.num_items)
+
+    @property
+    def supports_prefetch(self):
+        return False

fairseq/benchmark/dummy_model.py

@@ -0,0 +1,95 @@
+# Copyright (c) Facebook, Inc. and its affiliates.
+#
+# This source code is licensed under the MIT license found in the
+# LICENSE file in the root directory of this source tree.
+
+import torch.nn as nn
+import torch.nn.functional as F
+
+from fairseq.data import Dictionary
+from fairseq.models import (
+    FairseqDecoder,
+    FairseqLanguageModel,
+    register_model,
+    register_model_architecture,
+)
+
+
+@register_model('dummy_model')
+class DummyModel(FairseqLanguageModel):
+
+    def __init__(self, args, encoder):
+        super().__init__(encoder)
+        self.args = args
+
+    @staticmethod
+    def add_args(parser):
+        parser.add_argument('--num-layers', type=int, default=24)
+        parser.add_argument('--embed-dim', type=int, default=1024)
+
+    @classmethod
+    def build_model(cls, args, task):
+        encoder = DummyEncoder(
+            num_embed=len(task.target_dictionary),
+            embed_dim=args.embed_dim,
+            num_layers=args.num_layers,
+        )
+        return cls(args, encoder)
+
+    def forward(self, src_tokens, masked_tokens=None, **kwargs):
+        return self.decoder(src_tokens, masked_tokens=masked_tokens)
+
+
+class DummyEncoder(FairseqDecoder):
+
+    def __init__(self, num_embed=50000, embed_dim=1024, num_layers=24):
+        super().__init__(Dictionary())
+        self.embed = nn.Embedding(
+            num_embeddings=num_embed, embedding_dim=embed_dim, padding_idx=0
+        )
+        self.layers_a = nn.ModuleList([
+            nn.Sequential(
+                nn.LayerNorm(embed_dim),
+                nn.Linear(embed_dim, 3*embed_dim),  # q, k, v input projection
+                nn.Linear(3*embed_dim, embed_dim),  # skip self-attention
+                nn.Linear(embed_dim, embed_dim),    # output projection
+                nn.Dropout(),
+            )
+            for i in range(num_layers)
+        ])
+        self.layers_b = nn.ModuleList([
+            nn.Sequential(
+                nn.LayerNorm(embed_dim),
+                nn.Linear(embed_dim, 4*embed_dim),  # FFN
+                nn.ReLU(),
+                nn.Linear(4*embed_dim, embed_dim),  # FFN
+                nn.Dropout(0.1),
+            )
+            for i in range(num_layers)
+        ])
+        self.out_proj = nn.Linear(embed_dim, num_embed)
+
+    def forward(self, tokens, masked_tokens=None):
+        x = self.embed(tokens)
+        for layer_a, layer_b in zip(self.layers_a, self.layers_b):
+            x = x + layer_a(x)
+            x = x + layer_b(x)
+        x = self.out_proj(x)
+        if masked_tokens is not None:
+            x = x[masked_tokens]
+        return (x,)
+
+    def max_positions(self):
+        return 1024
+
+    def get_normalized_probs(self, net_output, log_probs, sample=None):
+        logits = net_output[0].float()
+        if log_probs:
+            return F.log_softmax(logits, dim=-1)
+        else:
+            return F.softmax(logits, dim=-1)
+
+
+@register_model_architecture('dummy_model', 'dummy_model')
+def base_architecture(args):
+    pass

fairseq/benchmark/dummy_mt.py

@@ -0,0 +1,120 @@
+# Copyright (c) Facebook, Inc. and its affiliates.
+#
+# This source code is licensed under the MIT license found in the
+# LICENSE file in the root directory of this source tree.
+
+import logging
+
+import numpy as np
+import torch
+
+from fairseq.data import Dictionary, FairseqDataset
+from fairseq.tasks import FairseqTask, register_task
+
+
+logger = logging.getLogger(__name__)
+
+
+@register_task('dummy_mt')
+class DummyMTTask(FairseqTask):
+
+    @staticmethod
+    def add_args(parser):
+        """Add task-specific arguments to the parser."""
+        parser.add_argument('--dict-size', default=49996, type=int)
+        parser.add_argument('--dataset-size', default=100000, type=int)
+        parser.add_argument('--tokens-per-sample', default=512, type=int,
+                            help='max number of total tokens over all segments '
+                                 'per sample for BERT dataset')
+
+    def __init__(self, args, dictionary):
+        super().__init__(args)
+        self.dictionary = dictionary
+        self.seed = args.seed
+
+        dictionary.pad_to_multiple_(8)  # often faster if divisible by 8
+
+        seq = torch.arange(args.tokens_per_sample + 1) + dictionary.pad() + 1
+
+        self.dummy_src = seq[:-1]
+        self.dummy_tgt = seq[1:]
+
+    @classmethod
+    def setup_task(cls, args, **kwargs):
+        """Setup the task. """
+        dictionary = Dictionary()
+        for i in range(args.dict_size):
+            dictionary.add_symbol('word{}'.format(i))
+        logger.info('dictionary: {} types'.format(len(dictionary)))
+        return cls(args, dictionary)
+
+    def load_dataset(self, split, epoch=1, combine=False, **kwargs):
+        """Load a given dataset split.
+        Args:
+            split (str): name of the split (e.g., train, valid, test)
+        """
+        if self.args.max_sentences is not None:
+            bsz = self.args.max_sentences
+        else:
+            bsz = max(1, self.args.max_tokens // self.args.tokens_per_sample)
+        tgt = torch.stack([self.dummy_tgt for _ in range(bsz)])
+        self.datasets[split] = DummyDataset(
+            {
+                'id': 1,
+                'net_input': {
+                    'src_tokens': torch.stack([self.dummy_src for _ in range(bsz)]),
+                    'src_lengths': torch.full(
+                        (bsz, ), self.args.tokens_per_sample, dtype=torch.long
+                    ),
+                    'prev_output_tokens': tgt.clone(),
+                },
+                'target': tgt,
+                'nsentences': bsz,
+                'ntokens': bsz * self.args.tokens_per_sample,
+            },
+            num_items=self.args.dataset_size,
+            item_size=self.args.tokens_per_sample,
+        )
+
+    @property
+    def source_dictionary(self):
+        return self.dictionary
+
+    @property
+    def target_dictionary(self):
+        return self.dictionary
+
+
+class DummyDataset(FairseqDataset):
+
+    def __init__(self, batch, num_items, item_size):
+        super().__init__()
+        self.batch = batch
+        self.num_items = num_items
+        self.item_size = item_size
+
+    def __getitem__(self, index):
+        return index
+
+    def __len__(self):
+        return self.num_items
+
+    def collater(self, samples):
+        return self.batch
+
+    @property
+    def sizes(self):
+        return np.array([self.item_size] * self.num_items)
+
+    def num_tokens(self, index):
+        return self.item_size
+
+    def size(self, index):
+        return self.item_size
+
+    def ordered_indices(self):
+        return np.arange(self.num_items)
+
+    @property
+    def supports_prefetch(self):
+        return False

fairseq/binarizer.py

@@ -0,0 +1,104 @@
+# Copyright (c) Facebook, Inc. and its affiliates.
+#
+# This source code is licensed under the MIT license found in the
+# LICENSE file in the root directory of this source tree.
+
+import os
+from collections import Counter
+
+from fairseq.tokenizer import tokenize_line
+import torch
+from fairseq.file_io import PathManager
+
+def safe_readline(f):
+    pos = f.tell()
+    while True:
+        try:
+            return f.readline()
+        except UnicodeDecodeError:
+            pos -= 1
+            f.seek(pos)  # search where this character begins
+
+
+class Binarizer:
+    @staticmethod
+    def binarize(
+        filename,
+        dict,
+        consumer,
+        tokenize=tokenize_line,
+        append_eos=True,
+        reverse_order=False,
+        offset=0,
+        end=-1,
+        already_numberized=False,
+    ):
+        nseq, ntok = 0, 0
+        replaced = Counter()
+
+        def replaced_consumer(word, idx):
+            if idx == dict.unk_index and word != dict.unk_word:
+                replaced.update([word])
+
+        with open(PathManager.get_local_path(filename), "r", encoding="utf-8") as f:
+            f.seek(offset)
+            # next(f) breaks f.tell(), hence readline() must be used
+            line = safe_readline(f)
+            while line:
+                if end > 0 and f.tell() > end:
+                    break
+                if already_numberized:
+                    id_strings = line.strip().split()
+                    id_list = [int(id_string) for id_string in id_strings]
+                    if reverse_order:
+                        id_list.reverse()
+                    if append_eos:
+                        id_list.append(dict.eos())
+                    ids = torch.IntTensor(id_list)
+                else:
+                    ids = dict.encode_line(
+                        line=line,
+                        line_tokenizer=tokenize,
+                        add_if_not_exist=False,
+                        consumer=replaced_consumer,
+                        append_eos=append_eos,
+                        reverse_order=reverse_order,
+                    )
+                nseq += 1
+                ntok += len(ids)
+                consumer(ids)
+                line = f.readline()
+        return {
+            "nseq": nseq,
+            "nunk": sum(replaced.values()),
+            "ntok": ntok,
+            "replaced": replaced,
+        }
+
+    @staticmethod
+    def binarize_alignments(filename, alignment_parser, consumer, offset=0, end=-1):
+        nseq = 0
+
+        with open(PathManager.get_local_path(filename), "r") as f:
+            f.seek(offset)
+            line = safe_readline(f)
+            while line:
+                if end > 0 and f.tell() > end:
+                    break
+                ids = alignment_parser(line)
+                nseq += 1
+                consumer(ids)
+                line = f.readline()
+        return {"nseq": nseq}
+
+    @staticmethod
+    def find_offsets(filename, num_chunks):
+        with open(PathManager.get_local_path(filename), "r", encoding="utf-8") as f:
+            size = os.fstat(f.fileno()).st_size
+            chunk_size = size // num_chunks
+            offsets = [0 for _ in range(num_chunks + 1)]
+            for i in range(1, num_chunks):
+                f.seek(chunk_size * i)
+                safe_readline(f)
+                offsets[i] = f.tell()
+            return offsets

fairseq/checkpoint_utils.py

@@ -0,0 +1,522 @@
+# Copyright (c) Facebook, Inc. and its affiliates.
+#
+# This source code is licensed under the MIT license found in the
+# LICENSE file in the root directory of this source tree.
+
+import collections
+import logging
+import os
+import re
+import traceback
+from collections import OrderedDict
+from typing import Union
+
+import torch
+from fairseq.file_io import PathManager
+from fairseq.models import FairseqDecoder, FairseqEncoder
+from torch.serialization import default_restore_location
+
+
+logger = logging.getLogger(__name__)
+
+
+def save_checkpoint(args, trainer, epoch_itr, val_loss):
+    from fairseq import distributed_utils, meters
+
+    # only one worker should attempt to create the required dir
+    if args.distributed_rank == 0:
+        os.makedirs(args.save_dir, exist_ok=True)
+
+    prev_best = getattr(save_checkpoint, "best", val_loss)
+    if val_loss is not None:
+        best_function = max if args.maximize_best_checkpoint_metric else min
+        save_checkpoint.best = best_function(val_loss, prev_best)
+
+    if args.no_save or not trainer.is_data_parallel_master:
+        return
+
+    def is_better(a, b):
+        return a >= b if args.maximize_best_checkpoint_metric else a <= b
+
+    write_timer = meters.StopwatchMeter()
+    write_timer.start()
+
+    epoch = epoch_itr.epoch
+    end_of_epoch = epoch_itr.end_of_epoch()
+    updates = trainer.get_num_updates()
+
+    suffix = getattr(args, "checkpoint_suffix", "")
+    checkpoint_conds = collections.OrderedDict()
+    checkpoint_conds["checkpoint{}{}.pt".format(epoch, suffix)] = (
+        end_of_epoch
+        and not args.no_epoch_checkpoints
+        and epoch % args.save_interval == 0
+    )
+    checkpoint_conds["checkpoint_{}_{}{}.pt".format(epoch, updates, suffix)] = (
+        not end_of_epoch
+        and args.save_interval_updates > 0
+        and updates % args.save_interval_updates == 0
+    )
+    checkpoint_conds["checkpoint_best{}.pt".format(suffix)] = val_loss is not None and (
+        not hasattr(save_checkpoint, "best")
+        or is_better(val_loss, save_checkpoint.best)
+    )
+    if val_loss is not None and args.keep_best_checkpoints > 0:
+        checkpoint_conds["checkpoint.best_{}_{:.2f}.pt".format(
+            args.best_checkpoint_metric, val_loss)] = (
+            not hasattr(save_checkpoint, "best")
+            or is_better(val_loss, save_checkpoint.best)
+        )
+    checkpoint_conds["checkpoint_last{}.pt".format(suffix)] = not args.no_last_checkpoints
+
+    extra_state = {"train_iterator": epoch_itr.state_dict(), "val_loss": val_loss}
+    if hasattr(save_checkpoint, "best"):
+        extra_state.update({"best": save_checkpoint.best})
+
+    checkpoints = [
+        os.path.join(args.save_dir, fn) for fn, cond in checkpoint_conds.items() if cond
+    ]
+    if len(checkpoints) > 0:
+        trainer.save_checkpoint(checkpoints[0], extra_state)
+        for cp in checkpoints[1:]:
+            PathManager.copy(checkpoints[0], cp, overwrite=True)
+
+        write_timer.stop()
+        logger.info(
+            "saved checkpoint {} (epoch {} @ {} updates, score {}) (writing took {} seconds)".format(
+                checkpoints[0], epoch, updates, val_loss, write_timer.sum
+            )
+        )
+
+    if not end_of_epoch and args.keep_interval_updates > 0:
+        # remove old checkpoints; checkpoints are sorted in descending order
+        checkpoints = checkpoint_paths(
+            args.save_dir, pattern=r"checkpoint_\d+_(\d+)\.pt"
+        )
+        for old_chk in checkpoints[args.keep_interval_updates :]:
+            if os.path.lexists(old_chk):
+                os.remove(old_chk)
+
+    if args.keep_last_epochs > 0:
+        # remove old epoch checkpoints; checkpoints are sorted in descending order
+        checkpoints = checkpoint_paths(args.save_dir, pattern=r"checkpoint(\d+)\.pt")
+        for old_chk in checkpoints[args.keep_last_epochs :]:
+            if os.path.lexists(old_chk):
+                os.remove(old_chk)
+
+    if args.keep_best_checkpoints > 0:
+        # only keep the best N checkpoints according to validation metric
+        checkpoints = checkpoint_paths(
+            args.save_dir, pattern=r"checkpoint\.best_{}_(\d+\.?\d*)\.pt".format(args.best_checkpoint_metric))
+        if not args.maximize_best_checkpoint_metric:
+            checkpoints = checkpoints[::-1]
+        for old_chk in checkpoints[args.keep_best_checkpoints:]:
+            if os.path.lexists(old_chk):
+                os.remove(old_chk)
+
+
+def load_checkpoint(args, trainer, **passthrough_args):
+    """
+    Load a checkpoint and restore the training iterator.
+
+    *passthrough_args* will be passed through to
+    ``trainer.get_train_iterator``.
+    """
+    reset_optimizer = args.reset_optimizer
+    reset_lr_scheduler = args.reset_lr_scheduler
+    optimizer_overrides = eval(args.optimizer_overrides)
+    reset_meters = args.reset_meters
+    reset_dataloader = args.reset_dataloader
+
+    if getattr(args, 'finetune_from_model', None) is not None \
+       and (reset_optimizer or reset_lr_scheduler or reset_meters or reset_dataloader):
+        raise ValueError("--finetune-from-model can not be set together with either --reset-optimizer"
+                         " or reset_lr_scheduler or reset_meters or reset_dataloader")
+
+    suffix = getattr(args, "checkpoint_suffix", "")
+    if args.restore_file == "checkpoint_last.pt":  # default value of restore_file is 'checkpoint_last.pt'
+        checkpoint_path = os.path.join(args.save_dir, "checkpoint_last{}.pt".format(suffix))
+        first_launch = not PathManager.exists(checkpoint_path)
+        if getattr(args, 'finetune_from_model', None) is not None and first_launch:
+            # if there is no last checkpoint to restore, start the finetune from pretrained model
+            # else just use usual logic to load checkpoint, e.g. restart from last checkpoint and etc.
+            if PathManager.exists(args.finetune_from_model):
+                checkpoint_path = args.finetune_from_model
+                reset_optimizer = True
+                reset_lr_scheduler = True
+                reset_meters = True
+                reset_dataloader = True
+                logger.info(f'loading pretrained model from {checkpoint_path}: '
+                            'optimizer, lr scheduler, meters, dataloader will be reset')
+            else:
+                raise ValueError(f'--funetune-from-model {args.finetune_from_model} does not exist')
+    elif getattr(args, "model_parallel_size", 1) > 1:
+        checkpoint_path = args.restore_file.replace(".pt", suffix + ".pt")
+    else:
+        checkpoint_path = args.restore_file
+
+    if args.restore_file != "checkpoint_last.pt" and getattr(args, 'finetune_from_model', None):
+        raise ValueError(
+            '--finetune-from-model and --restore-file (non-default value) '
+            'can not be specified together: ' + str(args))
+
+    extra_state = trainer.load_checkpoint(
+        checkpoint_path,
+        reset_optimizer,
+        reset_lr_scheduler,
+        optimizer_overrides,
+        reset_meters=reset_meters,
+    )
+
+    if (
+        extra_state is not None
+        and "best" in extra_state
+        and not reset_optimizer
+        and not reset_meters
+    ):
+        save_checkpoint.best = extra_state["best"]
+
+    if extra_state is not None and not reset_dataloader:
+        # restore iterator from checkpoint
+        itr_state = extra_state["train_iterator"]
+        epoch_itr = trainer.get_train_iterator(
+            epoch=itr_state["epoch"], load_dataset=True, **passthrough_args
+        )
+        epoch_itr.load_state_dict(itr_state)
+    else:
+        epoch_itr = trainer.get_train_iterator(
+            epoch=1, load_dataset=True, **passthrough_args
+        )
+
+    trainer.lr_step(epoch_itr.epoch)
+
+    return extra_state, epoch_itr
+
+
+def load_checkpoint_to_cpu(path, arg_overrides=None):
+    """Loads a checkpoint to CPU (with upgrading for backward compatibility)."""
+    with PathManager.open(path, "rb") as f:
+        state = torch.load(
+            f, map_location=lambda s, l: default_restore_location(s, "cpu")
+        )
+
+    args = state["args"]
+    if arg_overrides is not None:
+        for arg_name, arg_val in arg_overrides.items():
+            setattr(args, arg_name, arg_val)
+    state = _upgrade_state_dict(state)
+    return state
+
+
+def load_model_ensemble(filenames, arg_overrides=None, task=None, strict=True, suffix=''):
+    """Loads an ensemble of models.
+
+    Args:
+        filenames (List[str]): checkpoint files to load
+        arg_overrides (Dict[str,Any], optional): override model args that
+            were used during model training
+        task (fairseq.tasks.FairseqTask, optional): task to use for loading
+    """
+    ensemble, args, _task = load_model_ensemble_and_task(
+        filenames, arg_overrides, task, strict, suffix,
+    )
+    return ensemble, args
+
+
+def load_model_ensemble_and_task(filenames, arg_overrides=None, task=None, strict=True, suffix=''):
+    from fairseq import tasks
+
+    ensemble = []
+    for filename in filenames:
+        filename = filename.replace(".pt", suffix + ".pt")
+        if not PathManager.exists(filename):
+            raise IOError("Model file not found: {}".format(filename))
+        state = load_checkpoint_to_cpu(filename, arg_overrides)
+
+        args = state["args"]
+        if task is None:
+            task = tasks.setup_task(args)
+
+        # build model for ensemble
+        model = task.build_model(args)
+        model.load_state_dict(state["model"], strict=strict, args=args)
+        ensemble.append(model)
+    return ensemble, args, task
+
+
+def checkpoint_paths(path, pattern=r"checkpoint(\d+)\.pt"):
+    """Retrieves all checkpoints found in `path` directory.
+
+    Checkpoints are identified by matching filename to the specified pattern. If
+    the pattern contains groups, the result will be sorted by the first group in
+    descending order.
+    """
+    pt_regexp = re.compile(pattern)
+    files = os.listdir(path)
+
+    entries = []
+    for i, f in enumerate(files):
+        m = pt_regexp.fullmatch(f)
+        if m is not None:
+            idx = float(m.group(1)) if len(m.groups()) > 0 else i
+            entries.append((idx, m.group(0)))
+    return [os.path.join(path, x[1]) for x in sorted(entries, reverse=True)]
+
+
+def torch_persistent_save(*args, **kwargs):
+    for i in range(3):
+        try:
+            return torch.save(*args, **kwargs)
+        except Exception:
+            if i == 2:
+                logger.error(traceback.format_exc())
+
+
+def save_state(
+    filename,
+    args,
+    model_state_dict,
+    criterion,
+    optimizer,
+    lr_scheduler,
+    num_updates,
+    optim_history=None,
+    extra_state=None,
+):
+    from fairseq import utils
+
+    if optim_history is None:
+        optim_history = []
+    if extra_state is None:
+        extra_state = {}
+    state_dict = {
+        "args": args,
+        "model": model_state_dict or {},
+        "optimizer_history": optim_history
+        + [
+            {
+                "criterion_name": criterion.__class__.__name__,
+                "optimizer_name": optimizer.__class__.__name__,
+                "lr_scheduler_state": lr_scheduler.state_dict(),
+                "num_updates": num_updates,
+            }
+        ],
+        "extra_state": extra_state,
+    }
+    if utils.has_parameters(criterion):
+        state_dict["criterion"] = criterion.state_dict()
+    if not args.no_save_optimizer_state:
+        state_dict["last_optimizer_state"] = optimizer.state_dict()
+
+    # convert all state to CPU
+    state_dict = utils.move_to_cpu(state_dict)
+
+    with PathManager.open(filename, "wb") as f:
+        torch_persistent_save(state_dict, f)
+
+
+def _upgrade_state_dict(state):
+    """Helper for upgrading old model checkpoints."""
+    from fairseq import models, registry, tasks
+
+    # add optimizer_history
+    if "optimizer_history" not in state:
+        state["optimizer_history"] = [
+            {"criterion_name": "CrossEntropyCriterion", "best_loss": state["best_loss"]}
+        ]
+        state["last_optimizer_state"] = state["optimizer"]
+        del state["optimizer"]
+        del state["best_loss"]
+    # move extra_state into sub-dictionary
+    if "epoch" in state and "extra_state" not in state:
+        state["extra_state"] = {
+            "epoch": state["epoch"],
+            "batch_offset": state["batch_offset"],
+            "val_loss": state["val_loss"],
+        }
+        del state["epoch"]
+        del state["batch_offset"]
+        del state["val_loss"]
+    # reduce optimizer history's memory usage (only keep the last state)
+    if "optimizer" in state["optimizer_history"][-1]:
+        state["last_optimizer_state"] = state["optimizer_history"][-1]["optimizer"]
+        for optim_hist in state["optimizer_history"]:
+            del optim_hist["optimizer"]
+    # record the optimizer class name
+    if "optimizer_name" not in state["optimizer_history"][-1]:
+        state["optimizer_history"][-1]["optimizer_name"] = "FairseqNAG"
+    # move best_loss into lr_scheduler_state
+    if "lr_scheduler_state" not in state["optimizer_history"][-1]:
+        state["optimizer_history"][-1]["lr_scheduler_state"] = {
+            "best": state["optimizer_history"][-1]["best_loss"]
+        }
+        del state["optimizer_history"][-1]["best_loss"]
+    # keep track of number of updates
+    if "num_updates" not in state["optimizer_history"][-1]:
+        state["optimizer_history"][-1]["num_updates"] = 0
+    # old model checkpoints may not have separate source/target positions
+    if hasattr(state["args"], "max_positions") and not hasattr(
+        state["args"], "max_source_positions"
+    ):
+        state["args"].max_source_positions = state["args"].max_positions
+        state["args"].max_target_positions = state["args"].max_positions
+    # use stateful training data iterator
+    if "train_iterator" not in state["extra_state"]:
+        state["extra_state"]["train_iterator"] = {
+            "epoch": state["extra_state"]["epoch"],
+            "iterations_in_epoch": state["extra_state"].get("batch_offset", 0),
+        }
+    # default to translation task
+    if not hasattr(state["args"], "task"):
+        state["args"].task = "translation"
+    # --raw-text and --lazy-load are deprecated
+    if getattr(state["args"], "raw_text", False):
+        state["args"].dataset_impl = "raw"
+    elif getattr(state["args"], "lazy_load", False):
+        state["args"].dataset_impl = "lazy"
+    # epochs start at 1
+    if state["extra_state"]["train_iterator"] is not None:
+        state["extra_state"]["train_iterator"]["epoch"] = max(
+            state["extra_state"]["train_iterator"].get("epoch", 1),
+            1,
+        )
+
+    # set any missing default values in the task, model or other registries
+    registry.set_defaults(state["args"], tasks.TASK_REGISTRY[state["args"].task])
+    registry.set_defaults(state["args"], models.ARCH_MODEL_REGISTRY[state["args"].arch])
+    for registry_name, REGISTRY in registry.REGISTRIES.items():
+        choice = getattr(state["args"], registry_name, None)
+        if choice is not None:
+            cls = REGISTRY["registry"][choice]
+            registry.set_defaults(state["args"], cls)
+
+    return state
+
+
+def prune_state_dict(state_dict, args):
+    """Prune the given state_dict if desired for LayerDrop
+    (https://arxiv.org/abs/1909.11556).
+
+    Training with LayerDrop allows models to be robust to pruning at inference
+    time. This function prunes state_dict to allow smaller models to be loaded
+    from a larger model and re-maps the existing state_dict for this to occur.
+
+    It's called by functions that load models from checkpoints and does not
+    need to be called directly.
+    """
+    if not args or args.arch == "ptt_transformer":
+        # args should not be none, but don't crash if it is.
+        return state_dict
+
+    encoder_layers_to_keep = (
+        args.encoder_layers_to_keep if "encoder_layers_to_keep" in vars(args) else None
+    )
+    decoder_layers_to_keep = (
+        args.decoder_layers_to_keep if "decoder_layers_to_keep" in vars(args) else None
+    )
+
+    if not encoder_layers_to_keep and not decoder_layers_to_keep:
+        return state_dict
+
+    # apply pruning
+    logger.info(
+        "Pruning model to specified layer configuration - this works best if the model was trained with LayerDrop"
+    )
+
+    def create_pruning_pass(layers_to_keep, layer_name):
+        keep_layers = sorted(
+            [int(layer_string) for layer_string in layers_to_keep.split(",")]
+        )
+        mapping_dict = {}
+        for i in range(len(keep_layers)):
+            mapping_dict[str(keep_layers[i])] = str(i)
+
+        regex = re.compile(r"^{layer}.*\.layers\.(\d+)".format(layer=layer_name))
+        return {"substitution_regex": regex, "mapping_dict": mapping_dict}
+
+    pruning_passes = []
+    if encoder_layers_to_keep:
+        pruning_passes.append(create_pruning_pass(encoder_layers_to_keep, "encoder"))
+    if decoder_layers_to_keep:
+        pruning_passes.append(create_pruning_pass(decoder_layers_to_keep, "decoder"))
+
+    new_state_dict = {}
+    for layer_name in state_dict.keys():
+        match = re.search(r"\.layers\.(\d+)\.", layer_name)
+        # if layer has no number in it, it is a supporting layer, such as an
+        # embedding
+        if not match:
+            new_state_dict[layer_name] = state_dict[layer_name]
+            continue
+
+        # otherwise, layer should be pruned.
+        original_layer_number = match.group(1)
+        # figure out which mapping dict to replace from
+        for pruning_pass in pruning_passes:
+            if original_layer_number in pruning_pass["mapping_dict"] and pruning_pass[
+                "substitution_regex"
+            ].search(layer_name):
+                new_layer_number = pruning_pass["mapping_dict"][original_layer_number]
+                substitution_match = pruning_pass["substitution_regex"].search(
+                    layer_name
+                )
+                new_state_key = (
+                    layer_name[: substitution_match.start(1)]
+                    + new_layer_number
+                    + layer_name[substitution_match.end(1) :]
+                )
+                new_state_dict[new_state_key] = state_dict[layer_name]
+
+    # Since layers are now pruned, *_layers_to_keep are no longer needed.
+    # This is more of "It would make it work fix" rather than a proper fix.
+    if "encoder_layers_to_keep" in vars(args):
+        args.encoder_layers_to_keep = None
+    if "decoder_layers_to_keep" in vars(args):
+        args.decoder_layers_to_keep = None
+
+    return new_state_dict
+
+
+def load_pretrained_component_from_model(
+    component: Union[FairseqEncoder, FairseqDecoder], checkpoint: str
+):
+    """
+    Load a pretrained FairseqEncoder or FairseqDecoder from checkpoint into the
+    provided `component` object. If state_dict fails to load, there may be a
+    mismatch in the architecture of the corresponding `component` found in the
+    `checkpoint` file.
+    """
+    if not PathManager.exists(checkpoint):
+        raise IOError("Model file not found: {}".format(checkpoint))
+    state = load_checkpoint_to_cpu(checkpoint)
+    if isinstance(component, FairseqEncoder):
+        component_type = "encoder"
+    elif isinstance(component, FairseqDecoder):
+        component_type = "decoder"
+    else:
+        raise ValueError(
+            "component to load must be either a FairseqEncoder or "
+            "FairseqDecoder. Loading other component types are not supported."
+        )
+    component_state_dict = OrderedDict()
+    for key in state["model"].keys():
+        if key.startswith(component_type):
+            # encoder.input_layers.0.0.weight --> input_layers.0.0.weight
+            component_subkey = key[len(component_type) + 1 :]
+            component_state_dict[component_subkey] = state["model"][key]
+    component.load_state_dict(component_state_dict, strict=True)
+    return component
+
+
+def verify_checkpoint_directory(save_dir: str) -> None:
+    if not os.path.exists(save_dir):
+        os.makedirs(save_dir, exist_ok=True)
+    temp_file_path = os.path.join(save_dir, "dummy")
+    try:
+        with open(temp_file_path, "w"):
+            pass
+    except OSError as e:
+        logger.warning("Unable to access checkpoint save directory: {}".format(save_dir))
+        raise e
+    else:
+        os.remove(temp_file_path)

fairseq/clib/libbleu/libbleu.cpp

@@ -0,0 +1,141 @@
+/**
+ * Copyright 2017-present, Facebook, Inc.
+ * All rights reserved.
+ *
+ * This source code is licensed under the license found in the
+ * LICENSE file in the root directory of this source tree.
+ */
+
+#include <map>
+#include <array>
+#include <cstring>
+#include <cstdio>
+
+typedef struct
+{
+    size_t reflen;
+    size_t predlen;
+    size_t match1;
+    size_t count1;
+    size_t match2;
+    size_t count2;
+    size_t match3;
+    size_t count3;
+    size_t match4;
+    size_t count4;
+} bleu_stat;
+
+// left trim (remove pad)
+void bleu_ltrim(size_t* len, int** sent, int pad) {
+  size_t start = 0;
+  while(start < *len) {
+    if (*(*sent + start) != pad) { break; }
+    start++;
+  }
+  *sent += start;
+  *len -= start;
+}
+
+// right trim remove (eos)
+void bleu_rtrim(size_t* len, int** sent, int pad, int eos) {
+  size_t end = *len - 1;
+  while (end > 0) {
+    if (*(*sent + end) != eos && *(*sent + end) != pad) { break; }
+    end--;
+  }
+  *len = end + 1;
+}
+
+// left and right trim
+void bleu_trim(size_t* len, int** sent, int pad, int eos) {
+  bleu_ltrim(len, sent, pad);
+  bleu_rtrim(len, sent, pad, eos);
+}
+
+size_t bleu_hash(int len, int* data) {
+  size_t h     = 14695981039346656037ul;
+  size_t prime = 0x100000001b3;
+  char* b      = (char*) data;
+  size_t blen  = sizeof(int) * len;
+
+  while (blen-- > 0) {
+    h ^= *b++;
+    h *= prime;
+  }
+
+  return h;
+}
+
+void bleu_addngram(
+    size_t *ntotal, size_t *nmatch, size_t n,
+    size_t reflen, int* ref, size_t predlen, int* pred) {
+
+  if (predlen < n) { return; }
+
+  predlen = predlen - n + 1;
+  (*ntotal) += predlen;
+
+  if (reflen < n) { return; }
+
+  reflen = reflen - n + 1;
+
+  std::map<size_t, size_t> count;
+  while (predlen > 0) {
+    size_t w = bleu_hash(n, pred++);
+    count[w]++;
+    predlen--;
+  }
+
+  while (reflen > 0) {
+    size_t w = bleu_hash(n, ref++);
+    if (count[w] > 0) {
+      (*nmatch)++;
+      count[w] -=1;
+    }
+    reflen--;
+  }
+}
+
+extern "C" {
+
+#ifdef _WIN64
+__declspec(dllexport) 
+#endif
+void bleu_zero_init(bleu_stat* stat) {
+  std::memset(stat, 0, sizeof(bleu_stat));
+}
+
+#ifdef _WIN64
+__declspec(dllexport) 
+#endif
+void bleu_one_init(bleu_stat* stat) {
+  bleu_zero_init(stat);
+  stat->count1 = 0;
+  stat->count2 = 1;
+  stat->count3 = 1;
+  stat->count4 = 1;
+  stat->match1 = 0;
+  stat->match2 = 1;
+  stat->match3 = 1;
+  stat->match4 = 1;
+}
+
+#ifdef _WIN64
+__declspec(dllexport) 
+#endif
+void bleu_add(
+    bleu_stat* stat,
+    size_t reflen, int* ref, size_t predlen, int* pred, int pad, int eos) {
+
+  bleu_trim(&reflen, &ref, pad, eos);
+  bleu_trim(&predlen, &pred, pad, eos);
+  stat->reflen += reflen;
+  stat->predlen += predlen;
+
+  bleu_addngram(&stat->count1, &stat->match1, 1, reflen, ref, predlen, pred);
+  bleu_addngram(&stat->count2, &stat->match2, 2, reflen, ref, predlen, pred);
+  bleu_addngram(&stat->count3, &stat->match3, 3, reflen, ref, predlen, pred);
+  bleu_addngram(&stat->count4, &stat->match4, 4, reflen, ref, predlen, pred);
+}
+
+}

fairseq/clib/libbleu/module.cpp

@@ -0,0 +1,37 @@
+/**
+ * Copyright 2017-present, Facebook, Inc.
+ * All rights reserved.
+ *
+ * This source code is licensed under the license found in the
+ * LICENSE file in the root directory of this source tree.
+ */
+
+#include <Python.h>
+
+
+static PyMethodDef method_def[] = {
+  {NULL, NULL, 0, NULL}
+};
+
+static struct PyModuleDef module_def = {
+   PyModuleDef_HEAD_INIT,
+   "libbleu",   /* name of module */
+   NULL,     /* module documentation, may be NULL */
+   -1,       /* size of per-interpreter state of the module,
+                or -1 if the module keeps state in global variables. */
+   method_def
+};
+
+
+#if PY_MAJOR_VERSION == 2
+PyMODINIT_FUNC init_libbleu()
+#else
+PyMODINIT_FUNC PyInit_libbleu()
+#endif
+{
+  PyObject *m = PyModule_Create(&module_def);
+  if (!m) {
+    return NULL;
+  }
+  return m;
+}

fairseq/clib/libnat/edit_dist.cpp

@@ -0,0 +1,231 @@
+/**
+ * Copyright 2017-present, Facebook, Inc.
+ * All rights reserved.
+ *
+ * This source code is licensed under the license found in the
+ * LICENSE file in the root directory of this source tree.
+ */
+
+#include <torch/torch.h> // @manual=//caffe2:torch_extension
+#include <pybind11/detail/common.h>
+#include <pybind11/pybind11.h>
+#include <vector>
+#include <algorithm>
+#include <cstdint>
+#include <iosfwd>
+#include <memory>
+#include <new>
+#include <string>
+#include <utility>
+
+using namespace ::std;
+
+vector<vector<uint32_t>> edit_distance2_with_dp(
+    vector<uint32_t>& x,
+    vector<uint32_t>& y) {
+  uint32_t lx = x.size();
+  uint32_t ly = y.size();
+  vector<vector<uint32_t>> d(lx + 1, vector<uint32_t>(ly + 1));
+  for (uint32_t i = 0; i < lx + 1; i++) {
+    d[i][0] = i;
+  }
+  for (uint32_t j = 0; j < ly + 1; j++) {
+    d[0][j] = j;
+  }
+  for (uint32_t i = 1; i < lx + 1; i++) {
+    for (uint32_t j = 1; j < ly + 1; j++) {
+      d[i][j] =
+          min(min(d[i - 1][j], d[i][j - 1]) + 1,
+              d[i - 1][j - 1] + 2 * (x.at(i - 1) == y.at(j - 1) ? 0 : 1));
+    }
+  }
+  return d;
+}
+
+vector<vector<uint32_t>> edit_distance2_backtracking(
+    vector<vector<uint32_t>>& d,
+    vector<uint32_t>& x,
+    vector<uint32_t>& y,
+    uint32_t terminal_symbol) {
+  vector<uint32_t> seq;
+  vector<vector<uint32_t>> edit_seqs(x.size() + 2, vector<uint32_t>());
+  /*
+  edit_seqs:
+  0~x.size() cell is the insertion sequences
+  last cell is the delete sequence
+  */
+
+  if (x.size() == 0) {
+    edit_seqs.at(0) = y;
+    return edit_seqs;
+  }
+
+  uint32_t i = d.size() - 1;
+  uint32_t j = d.at(0).size() - 1;
+
+  while ((i >= 0) && (j >= 0)) {
+    if ((i == 0) && (j == 0)) {
+      break;
+    }
+
+    if ((j > 0) && (d.at(i).at(j - 1) < d.at(i).at(j))) {
+      seq.push_back(1); // insert
+      seq.push_back(y.at(j - 1));
+      j--;
+    } else if ((i > 0) && (d.at(i - 1).at(j) < d.at(i).at(j))) {
+      seq.push_back(2); // delete
+      seq.push_back(x.at(i - 1));
+      i--;
+    } else {
+      seq.push_back(3); // keep
+      seq.push_back(x.at(i - 1));
+      i--;
+      j--;
+    }
+  }
+
+  uint32_t prev_op, op, s, word;
+  prev_op = 0, s = 0;
+  for (uint32_t k = 0; k < seq.size() / 2; k++) {
+    op = seq.at(seq.size() - 2 * k - 2);
+    word = seq.at(seq.size() - 2 * k - 1);
+    if (prev_op != 1) {
+      s++;
+    }
+    if (op == 1) // insert
+    {
+      edit_seqs.at(s - 1).push_back(word);
+    } else if (op == 2) // delete
+    {
+      edit_seqs.at(x.size() + 1).push_back(1);
+    } else {
+      edit_seqs.at(x.size() + 1).push_back(0);
+    }
+
+    prev_op = op;
+  }
+
+  for (uint32_t k = 0; k < edit_seqs.size(); k++) {
+    if (edit_seqs[k].size() == 0) {
+      edit_seqs[k].push_back(terminal_symbol);
+    }
+  }
+  return edit_seqs;
+}
+
+vector<vector<uint32_t>> edit_distance2_backtracking_with_delete(
+    vector<vector<uint32_t>>& d,
+    vector<uint32_t>& x,
+    vector<uint32_t>& y,
+    uint32_t terminal_symbol,
+    uint32_t deletion_symbol) {
+  vector<uint32_t> seq;
+  vector<vector<uint32_t>> edit_seqs(x.size() + 1, vector<uint32_t>());
+  /*
+  edit_seqs:
+  0~x.size() cell is the insertion sequences
+  last cell is the delete sequence
+  */
+
+  if (x.size() == 0) {
+    edit_seqs.at(0) = y;
+    return edit_seqs;
+  }
+
+  uint32_t i = d.size() - 1;
+  uint32_t j = d.at(0).size() - 1;
+
+  while ((i >= 0) && (j >= 0)) {
+    if ((i == 0) && (j == 0)) {
+      break;
+    }
+
+    if ((j > 0) && (d.at(i).at(j - 1) < d.at(i).at(j))) {
+      seq.push_back(1); // insert
+      seq.push_back(y.at(j - 1));
+      j--;
+    } else if ((i > 0) && (d.at(i - 1).at(j) < d.at(i).at(j))) {
+      seq.push_back(2); // delete
+      seq.push_back(x.at(i - 1));
+      i--;
+    } else {
+      seq.push_back(3); // keep
+      seq.push_back(x.at(i - 1));
+      i--;
+      j--;
+    }
+  }
+
+  uint32_t prev_op, op, s, word;
+  prev_op = 0, s = 0;
+  for (uint32_t k = 0; k < seq.size() / 2; k++) {
+    op = seq.at(seq.size() - 2 * k - 2);
+    word = seq.at(seq.size() - 2 * k - 1);
+    if (prev_op != 1) {
+      s++;
+    }
+    if (op == 1) // insert
+    {
+      edit_seqs.at(s - 1).push_back(word);
+    } else if (op == 2) // delete
+    {
+      edit_seqs.at(s - 1).push_back(deletion_symbol);
+    }
+
+    prev_op = op;
+  }
+
+  for (uint32_t k = 0; k < edit_seqs.size(); k++) {
+    if (edit_seqs.at(k).size() == 0) {
+      edit_seqs.at(k).push_back(terminal_symbol);
+    }
+  }
+  return edit_seqs;
+}
+
+vector<uint32_t> compute_ed2(
+    vector<vector<uint32_t>>& xs,
+    vector<vector<uint32_t>>& ys) {
+  vector<uint32_t> distances(xs.size());
+  for (uint32_t i = 0; i < xs.size(); i++) {
+    vector<vector<uint32_t>> d = edit_distance2_with_dp(xs.at(i), ys.at(i));
+    distances.at(i) = d.at(xs.at(i).size()).at(ys.at(i).size());
+  }
+  return distances;
+}
+
+vector<vector<vector<uint32_t>>> suggested_ed2_path(
+    vector<vector<uint32_t>>& xs,
+    vector<vector<uint32_t>>& ys,
+    uint32_t terminal_symbol) {
+  vector<vector<vector<uint32_t>>> seq(xs.size());
+  for (uint32_t i = 0; i < xs.size(); i++) {
+    vector<vector<uint32_t>> d = edit_distance2_with_dp(xs.at(i), ys.at(i));
+    seq.at(i) =
+        edit_distance2_backtracking(d, xs.at(i), ys.at(i), terminal_symbol);
+  }
+  return seq;
+}
+
+vector<vector<vector<uint32_t>>> suggested_ed2_path_with_delete(
+    vector<vector<uint32_t>>& xs,
+    vector<vector<uint32_t>>& ys,
+    uint32_t terminal_symbol,
+    uint32_t deletion_symbol) {
+  vector<vector<vector<uint32_t>>> seq(xs.size());
+  for (uint32_t i = 0; i < xs.size(); i++) {
+    vector<vector<uint32_t>> d = edit_distance2_with_dp(xs.at(i), ys.at(i));
+    seq.at(i) = edit_distance2_backtracking_with_delete(
+        d, xs.at(i), ys.at(i), terminal_symbol, deletion_symbol);
+  }
+  return seq;
+}
+
+PYBIND11_MODULE(libnat, m) {
+  m.def("compute_ed2", &compute_ed2, "compute_ed2");
+  m.def("suggested_ed2_path", &suggested_ed2_path, "suggested_ed2_path");
+  m.def(
+      "suggested_ed2_path_with_delete",
+      &suggested_ed2_path_with_delete,
+      "suggested_ed2_path_with_delete");
+}

fairseq/clib/libnat_cuda/binding.cpp

@@ -0,0 +1,60 @@
+/**
+ * Copyright 2017-present, Facebook, Inc.
+ * All rights reserved.
+ *
+ * This source code is licensed under the license found in the
+ * LICENSE file in the root directory of this source tree.
+ */
+
+/*
+ This code is partially adpoted from https://github.com/1ytic/pytorch-edit-distance
+ */
+
+#include "edit_dist.h"
+#include <torch/types.h>
+
+#ifndef TORCH_CHECK
+#define TORCH_CHECK AT_CHECK
+#endif
+
+#define CHECK_CUDA(x) TORCH_CHECK(x.type().is_cuda(), #x " must be a CUDA tensor")
+#define CHECK_CONTIGUOUS(x) TORCH_CHECK(x.is_contiguous(), #x " must be contiguous")
+#define CHECK_INPUT(x) CHECK_CUDA(x); CHECK_CONTIGUOUS(x)
+
+
+torch::Tensor LevenshteinDistance(
+        torch::Tensor source,
+        torch::Tensor target,
+        torch::Tensor source_length,
+        torch::Tensor target_length) {
+
+    CHECK_INPUT(source);
+    CHECK_INPUT(target);
+    CHECK_INPUT(source_length);
+    CHECK_INPUT(target_length);
+    return LevenshteinDistanceCuda(source, target, source_length, target_length);
+}
+
+torch::Tensor GenerateDeletionLabel(
+        torch::Tensor source,
+        torch::Tensor operations) {
+
+    CHECK_INPUT(source);
+    CHECK_INPUT(operations);
+    return GenerateDeletionLabelCuda(source, operations);
+}
+
+std::pair<torch::Tensor, torch::Tensor> GenerateInsertionLabel(
+        torch::Tensor target,
+        torch::Tensor operations) {
+
+    CHECK_INPUT(target);
+    CHECK_INPUT(operations);
+    return GenerateInsertionLabelCuda(target, operations);
+}
+
+PYBIND11_MODULE(TORCH_EXTENSION_NAME, m) {
+    m.def("levenshtein_distance", &LevenshteinDistance, "Levenshtein distance");
+    m.def("generate_deletion_labels", &GenerateDeletionLabel, "Generate Deletion Label");
+    m.def("generate_insertion_labels", &GenerateInsertionLabel, "Generate Insertion Label");
+}

fairseq/clib/libnat_cuda/edit_dist.cu

@@ -0,0 +1,332 @@
+/**
+* Copyright 2017-present, Facebook, Inc.
+* All rights reserved.
+*
+* This source code is licensed under the license found in the
+* LICENSE file in the root directory of this source tree.
+*/
+
+#include "edit_dist.h"
+#include <THC/THC.h>
+#include <cuda.h>
+#include <cuda_runtime.h>
+#include <device_launch_parameters.h>
+#include <utility>      // std::pair
+
+template <typename scalar_t>
+__global__ void generate_deletion_label_kernel(
+        const scalar_t* __restrict__ source,
+        const size_t source_size,
+        const size_t operation_size,
+        int* __restrict__ operations,
+        int* __restrict__ labels) {
+
+    const int index = blockIdx.x;
+    const int offset = index * operation_size;
+    const int offset_label = index * source_size;
+
+    for (int i = 0; i < source_size; i++) {
+        labels[offset_label + i] = 0;
+    }
+
+    int k = 0;
+    for (int i = 0; i < operation_size; i++){
+        if (operations[offset + i] == 0){
+            break;
+        } else if (operations[offset + i] == 1){
+            continue;
+        } else {
+            labels[offset_label + k] = 3 - operations[offset + i];
+            k++;
+        }
+    }
+}
+
+template <typename scalar_t>
+__global__ void generate_insertion_label_kernel(
+        const scalar_t* __restrict__ target,
+        const size_t target_size,
+        const size_t operation_size,
+        int* __restrict__ operations,
+        int* __restrict__ labels,
+        int* __restrict__ masks) {
+
+    const int index = blockIdx.x;
+    const int offset = index * operation_size;
+    const int offset_label = index * target_size;
+
+    int k = 0;
+    int u = 0;
+    int m = 0;
+
+    for (int i = 0; i < target_size; i++) {
+        labels[offset_label + i] = 0;
+        masks[offset_label + i] = 0;
+    }
+
+    for (int i = 0; i < operation_size-1; i++){
+        if (operations[offset + i] == 0){
+            break;
+        } else if (operations[offset + i] == 2){
+            continue;
+        } else if (operations[offset + i] == 1){
+            masks[offset_label + m] = 1;
+            u++; m++;
+        } else {
+            labels[offset_label + k] = u;
+            masks[offset_label + m] = 0;
+            k++; m++;
+            u = 0;
+        }
+    }
+}
+
+template <typename scalar_t>
+__global__ void levenshtein_distance_kernel(
+        const scalar_t* __restrict__ source,
+        const scalar_t* __restrict__ target,
+        const int* __restrict__ source_length,
+        const int* __restrict__ target_length,
+        const size_t source_size,
+        const size_t target_size,
+        int* __restrict__ operations,
+        int* __restrict__ errors_curr) {
+
+    const int index = blockIdx.x;
+    const int offset = index * (source_size + target_size);
+    const int d = index * (source_size + 1) * (target_size + 1);
+    const int t = target_size + 1;
+
+    auto err_idx = [d, t](int i, int j) { return d + i * t + j; };
+    auto opt_idx = [offset](int k) { return offset + k; };
+
+    const int hyp_len = source_length[index];
+    const int ref_len = target_length[index];
+    const scalar_t* hyp_begin = source + index * source_size;
+    const scalar_t* ref_begin = target + index * target_size;
+
+    // dynamic programming
+    for (int i = 0; i <= hyp_len; i++){
+        errors_curr[err_idx(i, 0)] = i;
+    }
+    for (int j = 0; j <= ref_len; j++){
+        errors_curr[err_idx(0, j)] = j;
+    }
+    for (int i = 1; i <= hyp_len; i++){
+        for (int j = 1; j <= ref_len; j++){
+            errors_curr[err_idx(i, j)] = min(
+                min(
+                    errors_curr[err_idx(i-1, j)],
+                    errors_curr[err_idx(i, j-1)]
+                ) + 1,
+                errors_curr[err_idx(i-1, j-1)] + 2 * (
+                    *(hyp_begin+i-1) == *(ref_begin+j-1) ? 0 : 1
+                )
+            );
+        }
+    }
+
+    // back-tracing
+    int i = hyp_len;
+    int j = ref_len;
+    int o = hyp_len + ref_len;
+
+    for (int k = 0; k < source_size + target_size; k++) {
+        operations[opt_idx(k)] = 0;
+    }
+
+    while ((i >= 0) && (j >= 0)) {
+        if ((i == 0) && (j == 0)) {
+        break;
+        }
+
+        if ((j > 0) && (errors_curr[err_idx(i, j-1)] < errors_curr[err_idx(i, j)])) {
+            o--; operations[opt_idx(o)] = 1; j--;  // insertion
+        } else if ((i > 0) && (errors_curr[err_idx(i-1, j)] < errors_curr[err_idx(i, j)])) {
+            o--; operations[opt_idx(o)] = 2; i--;  // deletion
+        } else {
+            o--; operations[opt_idx(o)] = 3; i--; j--;  // do nothing
+        }
+    }
+
+    // moving to the left
+    for (int k = 0; k < hyp_len + ref_len; k++) {
+        if (k + o < hyp_len + ref_len){
+            operations[opt_idx(k)] = operations[opt_idx(k+o)];
+        } else{
+            operations[opt_idx(k)] = 0;  // padding
+        }
+    }
+
+}
+
+template <typename scalar_t>
+__global__ void faster_levenshtein_distance_kernel(
+        const scalar_t* __restrict__ source,
+        const scalar_t* __restrict__ target,
+        const int* __restrict__ source_length,
+        const int* __restrict__ target_length,
+        const size_t source_size,
+        const size_t target_size,
+        int* __restrict__ operations) {
+
+    extern __shared__ short errors[];
+    auto errors_curr = errors;
+
+    const int index = blockIdx.x;
+    const int offset = index * (source_size + target_size);
+    const int t = target_size + 1;
+
+    auto err_idx = [t](int i, int j) { return i * t + j; };
+    auto opt_idx = [offset](int k) { return offset + k; };
+
+    const int hyp_len = source_length[index];
+    const int ref_len = target_length[index];
+    const scalar_t* hyp_begin = source + index * source_size;
+    const scalar_t* ref_begin = target + index * target_size;
+
+    // dynamic programming
+    for (int i = 0; i <= hyp_len; i++){
+        errors_curr[err_idx(i, 0)] = i;
+    }
+    for (int j = 0; j <= ref_len; j++){
+        errors_curr[err_idx(0, j)] = j;
+    }
+    for (int i = 1; i <= hyp_len; i++){
+        for (int j = 1; j <= ref_len; j++){
+            errors_curr[err_idx(i, j)] = min(
+                min(
+                    errors_curr[err_idx(i-1, j)],
+                    errors_curr[err_idx(i, j-1)]
+                ) + 1,
+                errors_curr[err_idx(i-1, j-1)] + 2 * (
+                    *(hyp_begin+i-1) == *(ref_begin+j-1) ? 0 : 1
+                )
+            );
+        }
+    }
+
+    // back-tracing
+    int i = hyp_len;
+    int j = ref_len;
+    int o = hyp_len + ref_len;
+
+    for (int k = 0; k < source_size + target_size; k++) {
+        operations[opt_idx(k)] = 0;
+    }
+
+    while ((i >= 0) && (j >= 0)) {
+        if ((i == 0) && (j == 0)) {
+        break;
+        }
+
+        if ((j > 0) && (errors_curr[err_idx(i, j-1)] < errors_curr[err_idx(i, j)])) {
+            o--; operations[opt_idx(o)] = 1; j--;  // insertion
+        } else if ((i > 0) && (errors_curr[err_idx(i-1, j)] < errors_curr[err_idx(i, j)])) {
+            o--; operations[opt_idx(o)] = 2; i--;  // deletion
+        } else {
+            o--; operations[opt_idx(o)] = 3; i--; j--;  // do nothing
+        }
+    }
+
+    // moving to the left
+    for (int k = 0; k < hyp_len + ref_len; k++) {
+        if (k + o < hyp_len + ref_len){
+            operations[opt_idx(k)] = operations[opt_idx(k+o)];
+        } else{
+            operations[opt_idx(k)] = 0;  // padding
+        }
+    }
+
+}
+
+
+torch::Tensor GenerateDeletionLabelCuda(
+        torch::Tensor source,
+        torch::Tensor operations) {
+
+    const auto batch_size = source.size(0);
+    at::TensorOptions options(source.device());
+    options = options.dtype(at::ScalarType::Int);
+    auto labels = torch::empty({batch_size, source.size(1)}, options);
+    auto stream = at::cuda::getCurrentCUDAStream(source.device().index());
+
+    AT_DISPATCH_ALL_TYPES(source.scalar_type(), "generate_deletion_labels", ([&] {
+        generate_deletion_label_kernel<scalar_t><<<batch_size, 1, 0, stream>>>(
+            source.data<scalar_t>(),
+            source.size(1),
+            operations.size(1),
+            operations.data<int>(),
+            labels.data<int>());
+    }));
+
+    return labels;
+}
+
+std::pair<torch::Tensor, torch::Tensor> GenerateInsertionLabelCuda(
+    torch::Tensor target,
+    torch::Tensor operations) {
+
+const auto batch_size = target.size(0);
+at::TensorOptions options(target.device());
+options = options.dtype(at::ScalarType::Int);
+auto labels = torch::empty({batch_size, target.size(1)}, options);
+auto masks  = torch::empty({batch_size, target.size(1)}, options);
+auto stream = at::cuda::getCurrentCUDAStream(target.device().index());
+
+AT_DISPATCH_ALL_TYPES(target.scalar_type(), "generate_insertion_labels", ([&] {
+    generate_insertion_label_kernel<scalar_t><<<batch_size, 1, 0, stream>>>(
+        target.data<scalar_t>(),
+        target.size(1),
+        operations.size(1),
+        operations.data<int>(),
+        labels.data<int>(),
+        masks.data<int>());
+}));
+
+return std::make_pair(labels, masks);
+}
+
+
+torch::Tensor LevenshteinDistanceCuda(
+        torch::Tensor source,
+        torch::Tensor target,
+        torch::Tensor source_length,
+        torch::Tensor target_length) {
+
+    const auto batch_size = source.size(0);
+    const auto shared_size = (source.size(1) + 1) * (target.size(1) + 1) * sizeof(short);
+    
+    at::TensorOptions options(source.device());
+    options = options.dtype(at::ScalarType::Int);
+    auto operations = torch::empty({batch_size, source.size(1) + target.size(1)}, options);
+    auto stream = at::cuda::getCurrentCUDAStream(source.device().index());
+
+    if (shared_size > 40000) {
+        auto distances = torch::empty({batch_size, (source.size(1) + 1) * (target.size(1) + 1)}, options);
+        AT_DISPATCH_ALL_TYPES(source.scalar_type(), "levenshtein_distance", ([&] {
+            levenshtein_distance_kernel<scalar_t><<<batch_size, 1, 0, stream>>>(
+                source.data<scalar_t>(),
+                target.data<scalar_t>(),
+                source_length.data<int>(),
+                target_length.data<int>(),
+                source.size(1),
+                target.size(1),
+                operations.data<int>(),
+                distances.data<int>());
+        }));
+    } else {
+        AT_DISPATCH_ALL_TYPES(source.scalar_type(), "faster_levenshtein_distance", ([&] {
+            faster_levenshtein_distance_kernel<scalar_t><<<batch_size, 1, shared_size, stream>>>(
+                source.data<scalar_t>(),
+                target.data<scalar_t>(),
+                source_length.data<int>(),
+                target_length.data<int>(),
+                source.size(1),
+                target.size(1),
+                operations.data<int>());
+        }));
+    }
+
+    return operations;
+}

fairseq/clib/libnat_cuda/edit_dist.h

@@ -0,0 +1,25 @@
+/**
+ * Copyright 2017-present, Facebook, Inc.
+ * All rights reserved.
+ *
+ * This source code is licensed under the license found in the
+ * LICENSE file in the root directory of this source tree.
+ */
+
+#pragma once
+
+#include <torch/extension.h>
+
+torch::Tensor LevenshteinDistanceCuda(
+        torch::Tensor source,
+        torch::Tensor target,
+        torch::Tensor source_length,
+        torch::Tensor target_length);
+
+torch::Tensor GenerateDeletionLabelCuda(
+        torch::Tensor source,
+        torch::Tensor operations);
+
+std::pair<torch::Tensor, torch::Tensor> GenerateInsertionLabelCuda(
+        torch::Tensor source,
+        torch::Tensor operations);

fairseq/criterions/__init__.py

@@ -0,0 +1,24 @@
+# Copyright (c) Facebook, Inc. and its affiliates.
+#
+# This source code is licensed under the MIT license found in the
+# LICENSE file in the root directory of this source tree.
+
+import importlib
+import os
+
+from fairseq import registry
+from fairseq.criterions.fairseq_criterion import FairseqCriterion, LegacyFairseqCriterion
+
+
+build_criterion, register_criterion, CRITERION_REGISTRY = registry.setup_registry(
+    '--criterion',
+    base_class=FairseqCriterion,
+    default='cross_entropy',
+)
+
+
+# automatically import any Python files in the criterions/ directory
+for file in os.listdir(os.path.dirname(__file__)):
+    if file.endswith('.py') and not file.startswith('_'):
+        module = file[:file.find('.py')]
+        importlib.import_module('fairseq.criterions.' + module)