revert(mcp_service): restore file to 05544d4 version

esm/mcp_output/mcp_plugin/mcp_service.py

@@ -253,65 +253,6 @@ def validate_protein_sequence(sequence: str):
         }
 
 
-@mcp.tool(name="get_prediction_pdb", description="Download saved PDB by filename or latest; optionally re-save on server")
-def get_prediction_pdb(filename: str, save_to_path: str | None = None):
-    """Return PDB content saved under predictions directory.
-
-    Parameters:
-        filename (str): Filename in predictions directory. Use "latest" to fetch the most recent file.
-
-    Returns:
-        dict: success/result/error. result contains { filename, pdb_content, path }
-    """
-    try:
-        import glob
-        predictions_dir = os.path.join(os.path.dirname(os.path.dirname(os.path.abspath(__file__))), "predictions")
-        if not os.path.isdir(predictions_dir):
-            return {"success": False, "result": None, "error": f"Predictions dir not found: {predictions_dir}"}
-
-        target_path: str
-        if filename.strip().lower() == "latest":
-            files = sorted(
-                glob.glob(os.path.join(predictions_dir, "*.pdb")),
-                key=lambda p: os.path.getmtime(p),
-                reverse=True,
-            )
-            if not files:
-                return {"success": False, "result": None, "error": "No PDB files found"}
-            target_path = files[0]
-            filename = os.path.basename(target_path)
-        else:
-            # prevent path traversal
-            safe_name = os.path.basename(filename)
-            target_path = os.path.join(predictions_dir, safe_name)
-            if not os.path.isfile(target_path):
-                return {"success": False, "result": None, "error": f"File not found: {safe_name}"}
-
-        with open(target_path, "r") as f:
-            content = f.read()
-
-        # Optionally save a copy to a given path (inside container)
-        saved_to: str | None = None
-        if save_to_path:
-            try:
-                save_dir = os.path.dirname(save_to_path)
-                if save_dir and not os.path.isdir(save_dir):
-                    os.makedirs(save_dir, exist_ok=True)
-                with open(save_to_path, "w") as out_f:
-                    out_f.write(content)
-                saved_to = save_to_path
-            except Exception as save_err:
-                return {"success": False, "result": None, "error": f"Save failed: {save_err}"}
-
-        return {
-            "success": True,
-            "result": {"filename": filename, "pdb_content": content, "path": target_path, "saved_copy_path": saved_to},
-            "error": None,
-        }
-    except Exception as e:
-        return {"success": False, "result": None, "error": str(e)}
-
-
 def create_app():
     """
     Create and return a FastMCP instance.