from language.energy import ( MaximizeGlobularity, MaximizePLDDT, MaximizePTM, MaximizeSurfaceExposure, MinimizeCRmsd, MinimizeDRmsd, MatchSecondaryStructure, MinimizeSurfaceExposure, MinimizeSurfaceHydrophobics, SymmetryRing, ) from language.folding_callbacks import EsmFoldv1, FoldingCallback, FoldingResult from language.optimize import run_simulated_annealing from language.program import ProgramNode from language.sequence import ( ConstantSequenceSegment, FixedLengthSequenceSegment, VariableLengthSequenceSegment, sequence_from_atomarray, ) from language.utilities import get_atomarray_in_residue_range, pdb_file_to_atomarray