File size: 20,528 Bytes
42abbab 872bcb0 d5c1a2a 42abbab d5c1a2a 42abbab d5c1a2a 42abbab d5c1a2a 872bcb0 d5c1a2a 42abbab 872bcb0 42abbab 872bcb0 3d12711 d5c1a2a 42abbab e6ff4ad 42abbab e6ff4ad 42abbab e6ff4ad 42abbab e6ff4ad 42abbab e6ff4ad 42abbab e6ff4ad d5c1a2a 42abbab 872bcb0 ba5c090 be98905 ba5c090 be98905 3d12711 42abbab be98905 ba5c090 42abbab d5c1a2a 3d12711 d5c1a2a ba5c090 872bcb0 42abbab 872bcb0 d5c1a2a 42abbab 872bcb0 42abbab 872bcb0 42abbab 75a4aee 42abbab 75a4aee 42abbab 75a4aee 42abbab a872f7a 42abbab d5c1a2a 42abbab d5c1a2a 42abbab 872bcb0 42abbab 872bcb0 42abbab a872f7a 42abbab a872f7a 42abbab 872bcb0 42abbab 872bcb0 42abbab 872bcb0 42abbab 872bcb0 d5c1a2a 42abbab d5c1a2a 42abbab d5c1a2a 42abbab d5c1a2a 42abbab 872bcb0 d5c1a2a 872bcb0 d5c1a2a 42abbab d5c1a2a 42abbab d5c1a2a 872bcb0 d5c1a2a 872bcb0 d5c1a2a 42abbab 872bcb0 42abbab d5c1a2a 872bcb0 42abbab 872bcb0 42abbab 872bcb0 42abbab d5c1a2a 872bcb0 42abbab 872bcb0 42abbab 872bcb0 d5c1a2a 42abbab d5c1a2a 42abbab d5c1a2a 42abbab d5c1a2a 42abbab 872bcb0 42abbab 872bcb0 42abbab 872bcb0 42abbab 872bcb0 42abbab 75a4aee 42abbab d5c1a2a 872bcb0 d5c1a2a 872bcb0 42abbab 872bcb0 42abbab 872bcb0 d5c1a2a 42abbab d5c1a2a 75a4aee 42abbab 75a4aee 42abbab d5c1a2a 42abbab 872bcb0 42abbab 872bcb0 d5c1a2a 872bcb0 d5c1a2a 872bcb0 d5c1a2a 872bcb0 42abbab 872bcb0 42abbab 872bcb0 42abbab 872bcb0 42abbab 872bcb0 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 | """
Code Search API β v3.0
ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
Key architecture changes from v2:
β’ Model : ONNX fp16 via sentence-transformers backend="onnx"
β ONNX Runtime replaces PyTorch for every forward pass.
β Pre-built onnx/model_fp16.onnx from the HF repo is used
directly β no export step, no trust_remote_code issues.
β All three transformers-compatibility patches removed.
β’ Storage : LanceDB (disk-backed, columnar, mmap)
β Vectors live on disk, not in Python RAM.
β Chunks stored alongside vectors in the same table β
no separate pickle files.
β FAISS removed entirely.
β’ Indexing: Streaming pipeline
β Chunks are produced, encoded in micro-batches, and written
to LanceDB immediately. The full embeddings array is never
held in RAM.
β’ Retrieval: On-demand table loading + LRU cache
β Tables are opened from disk per request.
β An LRU cache (default: 5 tables, TTL: 10 min) keeps
recently used handles warm without pinning everything.
β’ RAM budget (approximate, CPU-only HF Space):
Model weights (fp16 ONNX) ~275 MB
Encoding peak (batch=8) ~100 MB transient
LanceDB per query ~10-50 MB transient
Python overhead ~150 MB
βββββββββββββββββββββββββββββββββββββ
Total steady-state ~425 MB (vs ~16 GB before)
"""
import os
import ast
import re
import gc
import time
import pathlib
import asyncio
from collections import OrderedDict
from concurrent.futures import ThreadPoolExecutor
from contextlib import asynccontextmanager
from threading import Lock
from typing import Annotated
os.environ["HF_HUB_DISABLE_PROGRESS_BARS"] = "1"
os.environ["TOKENIZERS_PARALLELISM"] = "false"
os.environ["HF_HUB_VERBOSITY"] = "error"
# Tell ONNX Runtime to use a modest thread count so it doesn't spike RSS
os.environ.setdefault("OMP_NUM_THREADS", "2")
import numpy as np
import lancedb
import pyarrow as pa
from fastapi import FastAPI, HTTPException, UploadFile, File, Form
from fastapi.middleware.cors import CORSMiddleware
from pydantic import BaseModel, Field
from sentence_transformers import SentenceTransformer
# βββββββββββββββββββββββββββ Constants ββββββββββββββββββββββββββββββββββββββββ
DIM = 768
ENCODE_BATCH_SIZE = int(os.getenv("ENCODE_BATCH_SIZE", "8"))
MAX_UPLOAD_BYTES = int(os.getenv("MAX_UPLOAD_MB", "50")) * 1024 * 1024
MAX_CHUNKS = int(os.getenv("MAX_CHUNKS", "10000"))
LRU_MAXSIZE = int(os.getenv("LRU_TABLE_CACHE", "5"))
LRU_TTL = int(os.getenv("LRU_TTL_SECONDS", "600")) # 10 min
LANGUAGE_MAP = {
".py": "python", ".js": "javascript", ".ts": "typescript",
".tsx": "typescript", ".jsx": "javascript", ".go": "go",
".rs": "rust", ".java": "java", ".cpp": "cpp",
".c": "c", ".cs": "csharp", ".rb": "ruby",
".php": "php", ".md": "markdown", ".txt": "text",
}
# LanceDB schema β one row per chunk
_SCHEMA = pa.schema([
pa.field("chunk_id", pa.int32()),
pa.field("text", pa.large_utf8()),
pa.field("vector", pa.list_(pa.float32(), DIM)),
])
# βββββββββββββββββββββββββββ Storage directory ββββββββββββββββββββββββββββββββ
def _resolve_store_dir() -> pathlib.Path:
primary = pathlib.Path("/data/lancedb")
try:
primary.mkdir(parents=True, exist_ok=True)
probe = primary / ".write_probe"
probe.touch(); probe.unlink()
return primary
except OSError:
fallback = pathlib.Path.home() / ".cache" / "code-search" / "lancedb"
fallback.mkdir(parents=True, exist_ok=True)
print(f"Warning: /data/lancedb not writable β using fallback: {fallback}")
return fallback
STORE_DIR = _resolve_store_dir()
# βββββββββββββββββββββββββββ LRU table-handle cache βββββββββββββββββββββββββββ
class _LRUTableCache:
"""
Keeps up to `maxsize` LanceDB table handles open in memory.
Entries expire after `ttl` seconds of inactivity.
Opening a LanceDB table is cheap (no vectors loaded into RAM), so
this is primarily about limiting open file-descriptor churn.
"""
def __init__(self, maxsize: int = 5, ttl: int = 600):
self._cache: OrderedDict = OrderedDict()
self._maxsize = maxsize
self._ttl = ttl
self._lock = Lock()
def get(self, key: str):
with self._lock:
entry = self._cache.get(key)
if entry is None:
return None
ts, tbl = entry
if time.monotonic() - ts > self._ttl:
del self._cache[key]
return None
self._cache.move_to_end(key)
self._cache[key] = (time.monotonic(), tbl)
return tbl
def set(self, key: str, tbl) -> None:
with self._lock:
if key in self._cache:
self._cache.move_to_end(key)
self._cache[key] = (time.monotonic(), tbl)
while len(self._cache) > self._maxsize:
self._cache.popitem(last=False)
def evict(self, key: str) -> None:
with self._lock:
self._cache.pop(key, None)
def keys(self):
with self._lock:
now = time.monotonic()
return [k for k, (ts, _) in self._cache.items()
if now - ts <= self._ttl]
_table_cache = _LRUTableCache(maxsize=LRU_MAXSIZE, ttl=LRU_TTL)
# βββββββββββββββββββββββββββ Global state βββββββββββββββββββββββββββββββββββββ
models: dict = {}
_executor = ThreadPoolExecutor(max_workers=2)
# βββββββββββββββββββββββββββ Lifespan βββββββββββββββββββββββββββββββββββββββββ
@asynccontextmanager
async def lifespan(app: FastAPI):
print("Loading jina-embeddings-v2-base-code (ONNX fp32)β¦")
import onnxruntime as ort
sess_opts = ort.SessionOptions()
sess_opts.graph_optimization_level = ort.GraphOptimizationLevel.ORT_ENABLE_ALL
sess_opts.intra_op_num_threads = int(os.getenv("OMP_NUM_THREADS", "2"))
# The correct Optimum-compatible way to disable a specific fusion:
sess_opts.add_session_config_entry("session.disable_optimizers", "SimplifiedLayerNormFusion")
model = SentenceTransformer(
"jinaai/jina-embeddings-v2-base-code",
backend="onnx",
model_kwargs={
"file_name": "onnx/model.onnx",
"provider": "CPUExecutionProvider",
"session_options": sess_opts,
# Removed the failing "disabled_optimizers" key from here
},
trust_remote_code=True,
)
model.max_seq_length = 8192
models["model"] = model
print(f"Model ready [backend={model.backend}]")
yield
models.clear()
# βββββββββββββββββββββββββββ App ββββββββββββββββββββββββββββββββββββββββββββββ
app = FastAPI(
title="Code Search API",
description="Semantic code search β jina-embeddings-v2-base-code ONNX fp16 + LanceDB",
version="3.0.0",
lifespan=lifespan,
)
app.add_middleware(
CORSMiddleware,
allow_origins=["*"], allow_methods=["*"], allow_headers=["*"],
)
# βββββββββββββββββββββββββββ Encoding βββββββββββββββββββββββββββββββββββββββββ
def _encode_sync(texts: list[str]) -> np.ndarray:
"""
Synchronous encode via ONNX Runtime.
Processes ENCODE_BATCH_SIZE texts at a time; GC between batches.
Returns float32 array of shape (len(texts), DIM).
Note: no torch.no_grad() needed β ONNX Runtime has no autograd.
"""
parts = []
for i in range(0, len(texts), ENCODE_BATCH_SIZE):
batch = texts[i : i + ENCODE_BATCH_SIZE]
embs = models["model"].encode(
batch,
show_progress_bar=False,
convert_to_numpy=True,
normalize_embeddings=False,
)
parts.append(np.asarray(embs, dtype=np.float32))
gc.collect()
return np.vstack(parts)
async def _encode_async(texts: list[str]) -> np.ndarray:
loop = asyncio.get_event_loop()
return await loop.run_in_executor(_executor, _encode_sync, texts)
def _normalize(embs: np.ndarray) -> np.ndarray:
norms = np.linalg.norm(embs, axis=1, keepdims=True)
return embs / np.maximum(norms, 1e-9)
# βββββββββββββββββββββββββββ LanceDB helpers ββββββββββββββββββββββββββββββββββ
def _db() -> lancedb.DBConnection:
return lancedb.connect(str(STORE_DIR))
def _table_exists(doc_id: str) -> bool:
return doc_id in _db().table_names()
def _open_table(doc_id: str):
"""Return table handle from LRU cache or open from disk."""
tbl = _table_cache.get(doc_id)
if tbl is None:
tbl = _db().open_table(doc_id)
_table_cache.set(doc_id, tbl)
return tbl
async def _build_table_streaming(doc_id: str, chunks: list[str]) -> None:
"""
Streaming index build β the heart of the memory optimisation.
Instead of: chunk_all β encode_all β build_index (full array in RAM)
We do: for each micro-batch β encode β write to LanceDB β free
Peak RAM = one micro-batch of embeddings (8 Γ 768 Γ 4 bytes β 24 KB).
LanceDB stores vectors as a memory-mapped Lance file on disk; only
the pages touched during a query are paged into RAM at search time.
"""
db = _db()
# Drop stale table if it exists
if doc_id in db.table_names():
db.drop_table(doc_id)
_table_cache.evict(doc_id)
tbl = None
for i in range(0, len(chunks), ENCODE_BATCH_SIZE):
batch = chunks[i : i + ENCODE_BATCH_SIZE]
embs = await _encode_async(batch)
embs = _normalize(embs)
records = [
{
"chunk_id": i + j,
"text": text,
"vector": vec.tolist(),
}
for j, (text, vec) in enumerate(zip(batch, embs))
]
if tbl is None:
tbl = db.create_table(doc_id, data=records,
schema=_SCHEMA, mode="overwrite")
else:
tbl.add(records)
del embs, records
gc.collect()
# Create ANN vector index for tables large enough to benefit
if tbl is not None and len(chunks) >= 256:
try:
tbl.create_index(
metric="dot", # vectors are pre-normalised
vector_column_name="vector",
num_partitions=max(1, min(256, len(chunks) // 40)),
num_sub_vectors=96,
)
except Exception as e:
print(f"Warning: ANN index creation skipped for '{doc_id}': {e}")
if tbl is not None:
_table_cache.set(doc_id, tbl)
def _search_table(doc_id: str, query: str, top_k: int) -> list[dict]:
"""
On-demand search. Opens the table handle (from LRU cache or disk),
runs a vector search, returns top_k results. Only the pages of the
Lance file containing the nearest vectors are paged into RAM.
"""
q_emb = _encode_sync([query])
q_emb = _normalize(q_emb)[0]
tbl = _open_table(doc_id)
results = (
tbl.search(q_emb.tolist(), vector_column_name="vector")
.metric("dot")
.limit(top_k)
.to_list()
)
return [
{
"rank": i + 1,
"score": round(float(r.get("_distance", r.get("score", 0.0))), 4),
"text": r["text"],
}
for i, r in enumerate(results)
]
# βββββββββββββββββββββββββββ Chunking βββββββββββββββββββββββββββββββββββββββββ
def detect_language(filename: str) -> str:
return LANGUAGE_MAP.get(os.path.splitext(filename)[-1].lower(), "text")
def chunk_text(text: str, chunk_size: int = 3, overlap: int = 1) -> list[str]:
sentences = re.split(r'(?<=[.!?])\s+', text.strip())
sentences = [s.strip() for s in sentences if s.strip()]
chunks, i = [], 0
while i < len(sentences):
chunks.append(" ".join(sentences[i : i + chunk_size]))
i += max(1, chunk_size - overlap)
return chunks
def chunk_fallback(source: str, max_lines: int = 40, overlap: int = 5) -> list[str]:
lines = source.splitlines()
chunks = []
i = 0
while i < len(lines):
chunks.append("\n".join(lines[i : i + max_lines]))
i += max(1, max_lines - overlap)
return chunks
def chunk_python(source: str, filepath: str = "") -> list[str]:
try:
tree = ast.parse(source)
lines = source.splitlines()
chunks = []
for node in ast.walk(tree):
if isinstance(node, (ast.FunctionDef, ast.AsyncFunctionDef, ast.ClassDef)):
snippet = "\n".join(lines[node.lineno - 1 : node.end_lineno])
prefix = f"# {filepath}\n" if filepath else ""
chunks.append(f"{prefix}{snippet}")
return chunks if chunks else chunk_fallback(source)
except SyntaxError:
return chunk_fallback(source)
def chunk_generic(source: str, filepath: str = "") -> list[str]:
pattern = re.compile(
r'(?:^|\n)(?='
r'(?:export\s+)?(?:async\s+)?'
r'(?:function|class|const\s+\w+\s*=\s*(?:async\s+)?(?:\(|function)|'
r'(?:public|private|protected|static|\s)*(?:fn|func|def)\s+\w+)'
r')',
re.MULTILINE,
)
parts = pattern.split(source)
prefix = f"// {filepath}\n" if filepath else ""
chunks = [prefix + p.strip() for p in parts if p.strip()]
return chunks if chunks else chunk_fallback(source)
def chunk_code(source: str, filename: str = "") -> list[str]:
lang = detect_language(filename)
if lang == "python":
return chunk_python(source, filepath=filename)
elif lang in ("markdown", "text"):
return chunk_text(source)
else:
return chunk_generic(source, filepath=filename)
# βββββββββββββββββββββββββββ Schemas ββββββββββββββββββββββββββββββββββββββββββ
class IndexResponse(BaseModel):
doc_id: str; chunks_indexed: int; message: str
class SearchRequest(BaseModel):
doc_id: str = Field(...); query: str = Field(...); top_k: int = Field(5, ge=1, le=20)
class SearchResult(BaseModel):
rank: int; score: float; text: str
class SearchResponse(BaseModel):
doc_id: str; query: str; results: list[SearchResult]
class EmbedRequest(BaseModel):
texts: list[str] = Field(...)
class EmbedResponse(BaseModel):
embeddings: list[list[float]]; dimensions: int
class FileEntry(BaseModel):
filename: str; content: str
class BatchIndexRequest(BaseModel):
doc_id: str; files: list[FileEntry]; replace: bool = True
class BatchIndexResponse(BaseModel):
doc_id: str; files_indexed: int; chunks_indexed: int
# βββββββββββββββββββββββββββ Routes βββββββββββββββββββββββββββββββββββββββββββ
@app.get("/", tags=["health"])
def root():
return {"status": "ok", "docs": "/docs"}
@app.get("/health", tags=["health"])
def health():
return {"status": "ok", "models_loaded": bool(models),
"backend": models["model"].backend if models else None}
@app.post("/index", response_model=IndexResponse, tags=["search"])
async def index_document(
file: Annotated[UploadFile, File(description="Source file to index")],
doc_id: Annotated[str, Form(description="Unique ID (defaults to filename)")] = "",
):
if not models:
raise HTTPException(503, "Model not loaded yet.")
content = await file.read()
if len(content) > MAX_UPLOAD_BYTES:
raise HTTPException(413,
f"File too large ({len(content)/1024/1024:.1f} MB). "
f"Max: {MAX_UPLOAD_BYTES//1024//1024} MB.")
source = content.decode("utf-8", errors="replace")
filename = file.filename or "unknown"
resolved_id = doc_id.strip() or os.path.splitext(filename)[0]
chunks = chunk_code(source, filename=filename)
if not chunks:
raise HTTPException(400, "Document produced no chunks.")
await _build_table_streaming(resolved_id, chunks)
gc.collect()
return IndexResponse(
doc_id=resolved_id,
chunks_indexed=len(chunks),
message=f"Document '{resolved_id}' indexed successfully.",
)
@app.post("/index/batch", response_model=BatchIndexResponse, tags=["search"])
async def index_batch(req: BatchIndexRequest):
if not models:
raise HTTPException(503, "Model not loaded yet.")
# Collect all chunks first (just strings β negligible RAM)
all_chunks: list[str] = []
for entry in req.files:
all_chunks.extend(chunk_code(entry.content, filename=entry.filename))
if not all_chunks:
raise HTTPException(400, "No chunks produced from provided files.")
if len(all_chunks) > MAX_CHUNKS:
raise HTTPException(413,
f"Too many chunks ({len(all_chunks):,}). Max: {MAX_CHUNKS:,}.")
# Streaming build β never holds full embeddings array
await _build_table_streaming(req.doc_id, all_chunks)
gc.collect()
return BatchIndexResponse(
doc_id=req.doc_id,
files_indexed=len(req.files),
chunks_indexed=len(all_chunks),
)
@app.post("/search", response_model=SearchResponse, tags=["search"])
async def search_document(req: SearchRequest):
if not _table_exists(req.doc_id):
raise HTTPException(404, f"doc_id '{req.doc_id}' not found. Call /index first.")
loop = asyncio.get_event_loop()
results = await loop.run_in_executor(
_executor, _search_table, req.doc_id, req.query, req.top_k
)
return SearchResponse(
doc_id=req.doc_id,
query=req.query,
results=[SearchResult(**r) for r in results],
)
@app.post("/embed", response_model=EmbedResponse, tags=["embeddings"])
async def embed_texts(req: EmbedRequest):
if not models:
raise HTTPException(503, "Model not loaded yet.")
if len(req.texts) > 64:
raise HTTPException(400, "Maximum 64 texts per request.")
embs = await _encode_async(req.texts)
return EmbedResponse(embeddings=embs.tolist(), dimensions=embs.shape[1])
@app.get("/documents", tags=["search"])
def list_documents():
db = _db()
docs = []
for name in db.table_names():
try:
tbl = db.open_table(name)
count = tbl.count_rows()
docs.append({"doc_id": name, "chunks": count})
except Exception:
docs.append({"doc_id": name, "chunks": -1})
return {"documents": docs}
@app.delete("/documents/{doc_id}", tags=["search"])
def delete_document(doc_id: str):
if not _table_exists(doc_id):
raise HTTPException(404, f"doc_id '{doc_id}' not found.")
_db().drop_table(doc_id)
_table_cache.evict(doc_id)
return {"deleted": doc_id} |